Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Reverse (-)

16443582 .. 16446918

Gene Structure 3337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGATGGAGCACAAAGCCAACATGGCAATGGTGTTTGTACAGATTGTATACGCAGGCATGCCATTGCTCTCTAAAGTAGCCATCTCTCAAGGAACCAACCCTTTTGTCTTTGTTTTTTATAGACAAGCCTTCGCGGCTCTTGCCTTGTCCCCTTTCGCATTCTTCCTTGAAAGCTCCAAGTCCTCTCCTCTATCGTTTATCTTGCTGCTCAAAATATTCTTTATCTCCTTATGCGGACTCACGCTGAGTCTTAATCTCTACTATGTGGCCATCGAGAACACCACCGCCACCTTCGCGGCAGCCACCACCAACGCCATCCCCTCTATCACATTCGTCTTGGCTCTCCTATTCAGATTAGAGACGGTGACCTTGAAGAAGTCACACGGAGTGGCCAAAGTCACTGGTTCAATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCAAGTTTGATAAACCACTATAACAGCAGCACCATCCCAAACGGCACCGTTCCATCAACCAAAAATTCTGTAAAAGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATTATCATGCAGAGCAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAGCACTTCAATGCTTGTTCAGTTGCATACAAAGCGCAGTTTGGGCAGTCGCGGTGAACAGAAACCCATCAGTTTGGAAAATCGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTGACTGGACTGACATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACTGCACTATACACTCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAGGAAACATTTTACCTTGGAAGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTTGGTCTATGGGGTAAAACTAAAGAAGAGGAAATACAAAGATATGGTGAAAAGCAAAGCCAAAAAGAAATTATAGAAGAAGTTATCATCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

343

Amino Acids

37.71

Weight (kDa)

9.24

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	8 - 139	5.9e-13	EamA-like transporter family
EamA	PF00892	177 - 313	2.9e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	3 cut(s)	137, 299, 680
AciI	CCGC	5 cut(s)	137, 237, 288, 299, 680
AcoI	YGGCCR	2 cut(s)	270, 393
AcsI	RAATTY	2 cut(s)	520, 713
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	877
AgsI	TTSAA	6 cut(s)	173, 376, 411, 537, 638, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	2 cut(s)	177, 839
AluI	AGCT	2 cut(s)	177, 839
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	356, 865
AoxI	GGCC	4 cut(s)	270, 393, 455, 806
ApeKI	GCWGC	4 cut(s)	208, 302, 483, 551
ApoI	RAATTY	2 cut(s)	520, 713
AspLEI	GCGC	2 cut(s)	431, 665
AspS9I	GGNCC	2 cut(s)	455, 806
AsuHPI	GGTGA	5 cut(s)	379, 607, 694, 769, 995
BalI	TGGCCA	2 cut(s)	272, 395
BanI	GGYRCC	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	195, 314, 495, 538
BccI	CCATC	6 cut(s)	92, 281, 326, 497, 517, 703
BceAI	ACGGC	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	356, 865
BfaI	CTAG	1 cut(s)	1030
BglI	GCCNNNNNGGC	2 cut(s)	26, 137
BisI	GCNGC	6 cut(s)	138, 209, 300, 303, 484, 552
BlsI	GCNGC	6 cut(s)	139, 210, 301, 304, 485, 553
BmgT120I	GGNCC	2 cut(s)	455, 806
BmiI	GGNNCC	2 cut(s)	97, 502
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	892, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse1I	ACTGG	3 cut(s)	409, 766, 809
Bse3DI	GCAATG	2 cut(s)	36, 65
BseDI	CCNNGG	2 cut(s)	892, 937
BseGI	GGATG	3 cut(s)	318, 489, 843
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	2 cut(s)	36, 65
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	3 cut(s)	409, 766, 809
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	195, 314, 495, 538
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	3 cut(s)	137, 299, 680
BshFI	GGCC	4 cut(s)	272, 395, 457, 808
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	2 cut(s)	356, 865
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	272, 395, 457, 808
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	40
BspACI	CCGC	5 cut(s)	137, 237, 288, 299, 680
BspANI	GGCC	4 cut(s)	272, 395, 457, 808
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	3 cut(s)	137, 299, 680
BspLI	GGNNCC	2 cut(s)	97, 502
BspT107I	GGYRCC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	36, 65
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	3 cut(s)	409, 766, 809
BssECI	CCNNGG	2 cut(s)	892, 937
BssNAI	GTATAC	1 cut(s)	52
BssT1I	CCWWGG	2 cut(s)	892, 937
Bst1107I	GTATAC	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	367, 505
Bst6I	CTCTTC	2 cut(s)	732, 957
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	58, 62, 549
BstDEI	CTNAG	1 cut(s)	248
BstEII	GGTNACC	1 cut(s)	367
BstENI	CCTNNNNNAGG	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	318, 489, 843
BstFNI	CGCG	3 cut(s)	137, 299, 680
BstHHI	GCGC	2 cut(s)	431, 665
BstMAI	GTCTC	2 cut(s)	356, 865
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 137, 143, 296, 660, 671
BstNSI	RCATGY	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	367
BstUI	CGCG	3 cut(s)	137, 299, 680
BstV1I	GCAGC	4 cut(s)	195, 314, 495, 538
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	272, 395, 457, 808
BtsCI	GGATG	3 cut(s)	318, 489, 843
BtsI	GCAGTG	2 cut(s)	816, 918
BtsIMutI	CAGTG	3 cut(s)	402, 816, 918
Cac8I	GCNNGC	3 cut(s)	58, 62, 549
CfoI	GCGC	2 cut(s)	431, 665
Cfr13I	GGNCC	2 cut(s)	455, 806
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	3 cut(s)	25, 61, 583
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	248
DraIII	CACNNNGTG	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	270, 393
Eam1104I	CTCTTC	2 cut(s)	732, 957
EarI	CTCTTC	2 cut(s)	732, 957
Eco130I	CCWWGG	2 cut(s)	892, 937
Eco91I	GGTNACC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	875
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	713
EcoT14I	CCWWGG	2 cut(s)	892, 937
ErhI	CCWWGG	2 cut(s)	892, 937
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	3 cut(s)	28, 64, 586
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	24, 60, 582
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	138, 209, 300, 303, 484, 552
FokI	GGATG	3 cut(s)	305, 476, 830
Fsp4HI	GCNGC	6 cut(s)	138, 209, 300, 303, 484, 552
FspBI	CTAG	1 cut(s)	1030
GlaI	GCGC	2 cut(s)	430, 664
GluI	GCNGC	6 cut(s)	138, 209, 300, 303, 484, 552
HaeIII	GGCC	4 cut(s)	272, 395, 457, 808
HhaI	GCGC	2 cut(s)	431, 665
Hin1II	CATG	3 cut(s)	28, 64, 586
Hin6I	GCGC	2 cut(s)	429, 663
HinP1I	GCGC	2 cut(s)	429, 663
HinfI	GANTC	2 cut(s)	240, 250
HphI	GGTGA	5 cut(s)	379, 607, 694, 769, 995
Hpy166II	GTNNAC	3 cut(s)	52, 685, 929
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	3 cut(s)	52, 685, 929
HpyAV	CCTTC	3 cut(s)	142, 304, 595
HpyCH4III	ACNGT	2 cut(s)	367, 505
HpyCH4V	TGCA	4 cut(s)	586, 654, 821, 855
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 137, 143, 296, 660, 671
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	28, 64, 586
HspAI	GCGC	2 cut(s)	429, 663
LmnI	GCTCC	2 cut(s)	10, 182
LpnPI	CCDG	6 cut(s)	42, 390, 550, 624, 747, 822
Lsp1109I	GCAGC	4 cut(s)	195, 314, 495, 538
MaeI	CTAG	1 cut(s)	1030
MaeIII	GTNAC	5 cut(s)	367, 381, 400, 757, 777
MboII	GAAGA	6 cut(s)	157, 388, 719, 811, 974, 1025
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	2 cut(s)	272, 395
MluCI	AATT	4 cut(s)	520, 713, 750, 1005
MluNI	TGGCCA	2 cut(s)	272, 395
MlyI	GAGTC	2 cut(s)	234, 259
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	196, 201, 334, 735, 958
Mox20I	TGGCCA	2 cut(s)	272, 395
MscI	TGGCCA	2 cut(s)	272, 395
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	29, 637
Msp20I	TGGCCA	2 cut(s)	272, 395
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	3 cut(s)	137, 299, 680
MwoI	GCNNNNNNNGC	6 cut(s)	26, 137, 143, 296, 660, 671
NlaIII	CATG	3 cut(s)	28, 64, 586
NlaIV	GGNNCC	2 cut(s)	97, 502
NmuCI	GTSAC	4 cut(s)	367, 381, 400, 757
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	139, 210, 301, 304, 485, 553
PleI	GAGTC	2 cut(s)	234, 258
PpsI	GAGTC	2 cut(s)	234, 258
PspEI	GGTNACC	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	97, 502
PspPI	GGNCC	2 cut(s)	455, 806
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	29, 637
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	6 cut(s)	138, 209, 300, 303, 484, 552
Sau96I	GGNCC	2 cut(s)	455, 806
SchI	GAGTC	2 cut(s)	234, 259
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	179, 296, 374, 535, 597, 727, 841, 894, 939
SmiMI	CAYNNNNRTG	2 cut(s)	29, 637
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	4 cut(s)	520, 713, 750, 1005
SsiI	CCGC	5 cut(s)	137, 237, 288, 299, 680
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	1030
StyI	CCWWGG	2 cut(s)	892, 937
TaaI	ACNGT	2 cut(s)	367, 505
TaqI	TCGA	2 cut(s)	276, 711
TasI	AATT	4 cut(s)	520, 713, 750, 1005
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	2 cut(s)	140, 302
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	3 cut(s)	409, 823, 918
TseFI	GTSAC	4 cut(s)	367, 381, 400, 757
TseI	GCWGC	4 cut(s)	208, 302, 483, 551
Tsp45I	GTSAC	4 cut(s)	367, 381, 400, 757
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	409, 823, 918
XagI	CCTNNNNNAGG	1 cut(s)	875
XapI	RAATTY	2 cut(s)	520, 713
XceI	RCATGY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.