Rorug06G0092700

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
12395695 .. 12396163
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0092700.1

Sequence Viewer

Length: 378 bp
ATGAGGATAGTGGGACTGACTGGTGCGATTTCGTCTGGGAAAAGTACTGTCTCAAATCTCTTCAAGGCCCATGAAATTCATGTTCTTGACGCCGATCTGGTGGCTTGTGATGTATTGAAGAAGGGAACTGGTGGATGGAAAAAGTCAGCATTTGGACAGGGCATTTTGCTACCTGATGGAAAAGTTGATAGGCCTAAACTAGAACAAATTGGGTTTAAGGTTATTGTTCTTGATATCCCTCTGTTGTTCAAGGCCAAGATGGACACATGGACAAAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCAAGTTGAGAGACAGAACAAGTGAGGATGATGCTCGAAACCAGATATTCACTTGA

Protein Analysis

125

Amino Acids

13.9

Weight (kDa)

9.33

Isoelectric Point (pI)

11.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CoaE PF01121 3 - 72 1.5e-17 Dephospho-CoA kinase
CoaE PF01121 73 - 123 1.1e-09 Dephospho-CoA kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 46
AgsI TTSAA 3 cut(s) 64, 118, 250
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 3 cut(s) 55, 313, 327
AlwI GGATC 1 cut(s) 293
AoxI GGCC 3 cut(s) 66, 191, 252
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 67
BccI CCATC 3 cut(s) 129, 170, 253
BcoDI GTCTC 3 cut(s) 55, 313, 327
BfaI CTAG 1 cut(s) 200
BmcAI AGTACT 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 25, 133
BseGI GGATG 2 cut(s) 140, 355
BseNI ACTGG 2 cut(s) 25, 133
BshFI GGCC 3 cut(s) 68, 193, 254
BslFI GGGAC 1 cut(s) 27
BsmAI GTCTC 3 cut(s) 55, 313, 327
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 68, 193, 254
Bsp143I GATC 2 cut(s) 94, 298
BspANI GGCC 3 cut(s) 68, 193, 254
BspPI GGATC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 25, 133
BssMI GATC 2 cut(s) 94, 298
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 140, 355
BstKTI GATC 2 cut(s) 97, 301
BstMAI GTCTC 3 cut(s) 55, 313, 327
BstMBI GATC 2 cut(s) 94, 298
BsuRI GGCC 3 cut(s) 68, 193, 254
BtsCI GGATG 2 cut(s) 140, 355
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 45
CviAII CATG 3 cut(s) 71, 80, 267
CviJI RGCY 6 cut(s) 68, 104, 193, 254, 277, 313
CviKI_1 RGCY 6 cut(s) 68, 104, 193, 254, 277, 313
CviQI GTAC 1 cut(s) 45
DpnI GATC 2 cut(s) 96, 300
DpnII GATC 2 cut(s) 94, 298
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 193
Eco32I GATATC 1 cut(s) 235
EcoRV GATATC 1 cut(s) 235
FaeI CATG 3 cut(s) 74, 83, 270
FaiI YATR 4 cut(s) 72, 81, 268, 292
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 70, 79, 266
FokI GGATG 2 cut(s) 147, 362
FspBI CTAG 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 3 cut(s) 68, 193, 254
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 74, 83, 270
HinfI GANTC 1 cut(s) 321
Hpy188III TCNNGA 4 cut(s) 86, 230, 302, 316
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 74, 83, 270
Kzo9I GATC 2 cut(s) 94, 298
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 8 cut(s) 6, 21, 83, 114, 143, 186, 315, 329
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 200
MalI GATC 2 cut(s) 96, 300
MboI GATC 2 cut(s) 94, 298
MboII GAAGA 2 cut(s) 52, 130
MluCI AATT 2 cut(s) 75, 207
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 2 cut(s) 249, 340
MseI TTAA 1 cut(s) 216
NdeII GATC 2 cut(s) 94, 298
NlaIII CATG 3 cut(s) 74, 83, 270
PceI AGGCCT 1 cut(s) 193
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 2 cut(s) 94, 298
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 1 cut(s) 315
SetI ASST 3 cut(s) 175, 222, 315
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 75, 207
SseBI AGGCCT 1 cut(s) 193
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 193
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 297, 358
TasI AATT 2 cut(s) 75, 207
TatI WGTACW 1 cut(s) 44
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 68, 87
XapI RAATTY 1 cut(s) 75
XspI CTAG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.