Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

2640650 .. 2643727

Gene Structure 3078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAGAGTTTAGTTGGTTATGCTCTGGTAATGGAGAGGCACAAGCCTTATATTGCCATGCTCTTCATACAATTTGTGTATGCAGGTATGGCCTTGTTCTCTAAGGCGGCAATGGCCAAGGGAATGAACCCTTTTGTGTTTGTGGTTTATCGTCAAGCTTTCGCCTCCCTCGCCTTGGCTCCATTTGCTTTCTTCTTTGAAAGTTCAAAAGACGCTCCTCTGTCGTACACCTTACTCTGCAAGATTTTCTTCATTTCCTTATCTGGGATTACCCTGAGTTTAAATCTTTACTATGTTGCAATCAACTACACCTCTGCAACGTTTGCTGCAGCCACCACCACAACAATTCCAGCAATTACCTTTGTCATGGCGGTTTTTTTAAGGATGGAAAGCATTTCTATGAAACATTTGTATGGTGTGGCCAAGGTGTTGGGTTCTCTCACAAGCCTTTCAGGGGCATTGGTGTTTGCTTTAGTTAAGGGGCCTTCCATAAAGTTCACGAATTGGTATCCATCACATCATCAGACACAAATTTCAGACTCATCATCTTCCTCCAGAGTGGACTGGATAAAAGGTTCCTTGTTCATGATTTCAGCCAATACTGCCTGGTCTTTGTGGCTAATTTTGCAGGGTCCCATTGTCAAGCAATATCCGGCAAAGTTGAGGCTTACCACTCTGCAATGCTTCTTTAGCTGCATCCAATCATCATTTTTGGCCATTGCAATTGAGAGAAACCCATCAGCTTGGAAGATTGGATGGGACATTCATCTTCTCTCTGTTTTCTATTGTGGTGTAATTGTGACTGGAATTACCTACTGGCTGCAAGTTTGGGCCATAGAGAAGAAAGGCCCAGTTTTCACATCAATGTTCACTCCTTTAGCACTGCTTATAACAGCTATCTTCTCAGCAATCATGTGGAAAGAAGCCCTTCACTGGGGAAGCATTGGTGGAGGCGTGTTGCTTGTTGTGGGTCTGTATAGCGTTTTGTGGGGAAAGGACAAAGAGGACAGGAAAAGCGAAGAAAGTGAACAGAAACAAGAAAGCAAGGAGGAAGTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

354

Amino Acids

39.32

Weight (kDa)

9.32

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	74
AciI	CCGC	2 cut(s)	107, 371
AclI	AACGTT	1 cut(s)	320
AcoI	YGGCCR	3 cut(s)	114, 420, 714
AcsI	RAATTY	1 cut(s)	531
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	5 cut(s)	175, 264, 454, 933, 934
AgsI	TTSAA	2 cut(s)	200, 207
AjnI	CCWGG	1 cut(s)	605
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	4 cut(s)	158, 693, 743, 896
AluI	AGCT	4 cut(s)	158, 693, 743, 896
AoxI	GGCC	7 cut(s)	90, 114, 420, 482, 714, 831, 847
ApeKI	GCWGC	4 cut(s)	326, 329, 693, 820
ApoI	RAATTY	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	927
AspS9I	GGNCC	4 cut(s)	482, 632, 831, 848
AvaII	GGWCC	1 cut(s)	632
BalI	TGGCCA	3 cut(s)	116, 422, 716
BbvI	GCAGC	4 cut(s)	313, 341, 680, 807
BccI	CCATC	4 cut(s)	379, 520, 745, 750
BciT130I	CCWGG	1 cut(s)	607
BciVI	GTATCC	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	5 cut(s)	108, 327, 330, 694, 821
BlsI	GCNGC	5 cut(s)	109, 328, 331, 695, 822
Bme1390I	CCNGG	1 cut(s)	607
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	4 cut(s)	482, 632, 831, 848
BmiI	GGNNCC	5 cut(s)	180, 483, 577, 633, 634
BmrFI	CCNGG	1 cut(s)	607
BmrI	ACTGGG	2 cut(s)	845, 943
BmsI	GCATC	1 cut(s)	705
BmuI	ACTGGG	2 cut(s)	845, 943
BpmI	CTGGAG	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	117, 174, 423
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 264, 454, 933, 934
Bse1I	ACTGG	5 cut(s)	569, 808, 821, 851, 938
Bse3DI	GCAATG	3 cut(s)	117, 686, 717
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	3 cut(s)	117, 174, 423
BseGI	GGATG	3 cut(s)	390, 696, 761
BseLI	CCNNNNNNNGG	5 cut(s)	175, 264, 454, 933, 934
BseMI	GCAATG	3 cut(s)	117, 686, 717
BseMII	CTCAG	2 cut(s)	266, 918
BseNI	ACTGG	5 cut(s)	569, 808, 821, 851, 938
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	313, 341, 680, 807
BshFI	GGCC	7 cut(s)	92, 116, 422, 484, 716, 833, 849
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	2 cut(s)	618, 773
BslI	CCNNNNNNNGG	5 cut(s)	175, 264, 454, 933, 934
BsmFI	GGGAC	2 cut(s)	618, 773
BsnI	GGCC	7 cut(s)	92, 116, 422, 484, 716, 833, 849
BspACI	CCGC	2 cut(s)	107, 371
BspANI	GGCC	7 cut(s)	92, 116, 422, 484, 716, 833, 849
BspCNI	CTCAG	2 cut(s)	267, 917
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	180, 483, 577, 633, 634
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	68
BsrDI	GCAATG	3 cut(s)	117, 686, 717
BsrI	ACTGG	5 cut(s)	569, 808, 821, 851, 938
BssECI	CCNNGG	3 cut(s)	117, 174, 423
BssT1I	CCWWGG	3 cut(s)	117, 174, 423
Bst2UI	CCWGG	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	102, 275, 904
BstF5I	GGATG	3 cut(s)	390, 696, 761
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 113, 170, 185, 323, 602, 625, 690
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	605
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	313, 341, 680, 807
BstXI	CCANNNNNNTGG	2 cut(s)	430, 744
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	7 cut(s)	92, 116, 422, 484, 716, 833, 849
BtsCI	GGATG	3 cut(s)	390, 696, 761
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	2 cut(s)	881, 931
BveI	ACCTGC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	4 cut(s)	482, 632, 831, 848
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	4 cut(s)	58, 367, 586, 913
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	3 cut(s)	102, 275, 904
DraI	TTTAAA	1 cut(s)	282
EaeI	YGGCCR	3 cut(s)	114, 420, 714
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	117, 174, 423
Eco47I	GGWCC	1 cut(s)	632
EcoO109I	RGGNCCY	2 cut(s)	482, 632
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	3 cut(s)	117, 174, 423
ErhI	CCWWGG	3 cut(s)	117, 174, 423
FaeI	CATG	4 cut(s)	61, 370, 589, 916
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 912, 944
FaqI	GGGAC	2 cut(s)	618, 773
FatI	CATG	4 cut(s)	57, 366, 585, 912
Fnu4HI	GCNGC	5 cut(s)	108, 327, 330, 694, 821
FokI	GGATG	3 cut(s)	397, 683, 768
Fsp4HI	GCNGC	5 cut(s)	108, 327, 330, 694, 821
GluI	GCNGC	5 cut(s)	108, 327, 330, 694, 821
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	7 cut(s)	92, 116, 422, 484, 716, 833, 849
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	61, 370, 589, 916
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	1 cut(s)	653
Hpy166II	GTNNAC	5 cut(s)	228, 498, 562, 870, 1028
Hpy188I	TCNGA	2 cut(s)	525, 538
Hpy188III	TCNNGA	3 cut(s)	499, 555, 586
Hpy8I	GTNNAC	5 cut(s)	228, 498, 562, 870, 1028
HpyAV	CCTTC	2 cut(s)	495, 938
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 113, 170, 185, 323, 602, 625, 690
HpyF3I	CTNAG	3 cut(s)	102, 275, 904
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	61, 370, 589, 916
KflI	GGGWCCC	1 cut(s)	632
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	184, 220
Lsp1109I	GCAGC	4 cut(s)	313, 341, 680, 807
LweI	GCATC	1 cut(s)	705
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	799
MfeI	CAATTG	1 cut(s)	723
MlsI	TGGCCA	3 cut(s)	116, 422, 716
MluCI	AATT	9 cut(s)	71, 345, 354, 502, 531, 621, 723, 795, 807
MluNI	TGGCCA	3 cut(s)	116, 422, 716
MlyI	GAGTC	1 cut(s)	533
Mox20I	TGGCCA	3 cut(s)	116, 422, 716
MroXI	GAANNNNTTC	1 cut(s)	927
MscI	TGGCCA	3 cut(s)	116, 422, 716
MseI	TTAA	3 cut(s)	281, 380, 477
MslI	CAYNNNNRTG	3 cut(s)	398, 411, 863
Msp20I	TGGCCA	3 cut(s)	116, 422, 716
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	607
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	8 cut(s)	89, 113, 170, 185, 323, 602, 625, 690
NlaIII	CATG	4 cut(s)	61, 370, 589, 916
NlaIV	GGNNCC	5 cut(s)	180, 483, 577, 633, 634
NmuCI	GTSAC	1 cut(s)	799
PagI	TCATGA	1 cut(s)	585
PciSI	GCTCTTC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	927
PkrI	GCNGC	5 cut(s)	109, 328, 331, 695, 822
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PpuMI	RGGWCCY	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	890
Psp1406I	AACGTT	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	5 cut(s)	180, 483, 577, 633, 634
PspPI	GGNCC	4 cut(s)	482, 632, 831, 848
PspPPI	RGGWCCY	1 cut(s)	632
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	3 cut(s)	398, 411, 863
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	281, 380, 477
SatI	GCNGC	5 cut(s)	108, 327, 330, 694, 821
Sau96I	GGNCC	4 cut(s)	482, 632, 831, 848
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	607
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	3 cut(s)	398, 411, 863
Sse9I	AATT	9 cut(s)	71, 345, 354, 502, 531, 621, 723, 795, 807
SsiI	CCGC	2 cut(s)	107, 371
StyD4I	CCNGG	1 cut(s)	605
StyI	CCWWGG	3 cut(s)	117, 174, 423
TaiI	ACGT	1 cut(s)	323
TasI	AATT	9 cut(s)	71, 345, 354, 502, 531, 621, 723, 795, 807
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	3 cut(s)	281, 380, 477
Tru9I	TTAA	3 cut(s)	281, 380, 477
TscAI	CASTG	2 cut(s)	888, 938
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	4 cut(s)	326, 329, 693, 820
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	7 cut(s)	17, 55, 140, 241, 416, 574, 755
TspRI	CASTG	2 cut(s)	888, 938
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.