Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

3178070 .. 3181436

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1025300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCATATATGAAAATGAAGTGTTTAGTAATGGAGAGGCATAAGGCTTATATTGCAATGCTCTTCATACAGTTTGTGTATGCAGGTATGGCCTTGTTCTCTAAGGCAGCAATTTCTAAAGGAATGAACCCTTTTGTCTTTGTGGTTTATCGTCAAGCTTTTGCCTCCCTTGCCTTGGCTCCCTTTGCGTTCTTCCTTGAAAGTTCAAAAGAAGCTCCTCTTTCCTACACCTTACTCTGCAAGATTTTCTTAGTCTCCTTATCTGGGATTACCCTGAGTTTAAATCTCTACTATGTTGCAATCAACTACACCTCTGCAACCTTTGCTGCAGCCACCACCACTTTAATTCCTGCGATCACGTTTTTCATGGCGGTTTTATTAAGGATGGAAAGCATTTCTATGAAACATTTGTACGGAGTCGCCAAGGTGTTGAGTTCTCTCACAAGCCTTTCAGGAGCATTGGTGTTTGCTTTAGTGAAAGGGCCTTCCATAAACTTCAACTGGTTTCCATCAAATCAAAGGCAAATTCCACACTCCTCATCTTCCTCCACAGGAAGAGACTGGTTAAAGGGTTCCCTCATCATGATCTCGGCCAATACTGCATGGGCTTTGTGGTTAATTTTGCAGGGTCCCATTATCAAGCAATATCCGGCAAAGTTGAGGCTTACCACTCTGCAATGCTTCTTCAGCTGCATCCTGTCAGCTTTCTGGGCCCTTGCATTTGAGAGAAACCCATCAGCTTGGAAGATTGGATGGGACATTCATCTTCTCTCTGTTGTCTATTGTGGTGTAATTGTAACTGGGATTACTTATTGGCTGCAAGTTTGGGCCATAGAGAAGAAAGGCCCGGTATTCACTGCATCGTTCACTCCATTATCACTTATTATAACAGCCGTCTTCTCAGCAATCATGTGGAAAGAAGCCATCTACTTGGGAAGTATCGGAGGGGGTGTATTGCTAGTTGCAGGTCTCTATGGCGTGTTGTGGGGAAAGAAGAAAGAGGACCAAAAGAGCCAAGAAAGTGATCAAAAACAAGAAAACAAGCCGGAAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

353

Amino Acids

39.09

Weight (kDa)

9.57

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	15 - 147	3.9e-14	EamA-like transporter family
EamA	PF00892	190 - 328	1.8e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
Acc36I	ACCTGC	2 cut(s)	74, 956
AciI	CCGC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	670
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	175, 264
AgsI	TTSAA	3 cut(s)	200, 207, 499
AluBI	AGCT	5 cut(s)	158, 215, 690, 704, 740
AluI	AGCT	5 cut(s)	158, 215, 690, 704, 740
Alw26I	GTCTC	3 cut(s)	259, 552, 974
AoxI	GGCC	6 cut(s)	90, 482, 591, 711, 828, 844
ApaI	GGGCCC	1 cut(s)	715
ApeKI	GCWGC	5 cut(s)	107, 326, 329, 690, 817
ApoI	RAATTY	1 cut(s)	525
AspS9I	GGNCC	7 cut(s)	482, 629, 711, 712, 828, 845, 1003
AsuC2I	CCSGG	1 cut(s)	848
AvaII	GGWCC	2 cut(s)	629, 1003
BaeGI	GKGCMC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	889
BbvI	GCAGC	5 cut(s)	119, 313, 341, 677, 804
BccI	CCATC	5 cut(s)	379, 517, 742, 747, 932
BceAI	ACGGC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	3 cut(s)	259, 552, 974
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	2 cut(s)	74, 956
BisI	GCNGC	5 cut(s)	108, 327, 330, 691, 818
BlsI	GCNGC	5 cut(s)	109, 328, 331, 692, 819
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	2 cut(s)	629, 1003
BmgT120I	GGNCC	7 cut(s)	482, 629, 711, 712, 828, 845, 1003
BmiI	GGNNCC	5 cut(s)	180, 574, 630, 631, 713
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	2 cut(s)	702, 869
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	889
BpuMI	CCSGG	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	2 cut(s)	174, 423
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 936, 966
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 264
Bse1I	ACTGG	3 cut(s)	506, 566, 805
Bse3DI	GCAATG	2 cut(s)	63, 683
BseDI	CCNNGG	2 cut(s)	174, 423
BseGI	GGATG	3 cut(s)	390, 693, 758
BseLI	CCNNNNNNNGG	2 cut(s)	175, 264
BseMI	GCAATG	2 cut(s)	63, 683
BseMII	CTCAG	2 cut(s)	266, 915
BseNI	ACTGG	3 cut(s)	506, 566, 805
BseRI	GAGGAG	2 cut(s)	207, 526
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	5 cut(s)	119, 313, 341, 677, 804
BshFI	GGCC	6 cut(s)	92, 484, 593, 713, 830, 846
BsiSI	CCGG	3 cut(s)	650, 848, 1046
BslFI	GGGAC	2 cut(s)	615, 770
BslI	CCNNNNNNNGG	2 cut(s)	175, 264
BsmAI	GTCTC	3 cut(s)	259, 552, 974
BsmFI	GGGAC	2 cut(s)	615, 770
BsnI	GGCC	6 cut(s)	92, 484, 593, 713, 830, 846
Bso31I	GGTCTC	1 cut(s)	974
Bsp120I	GGGCCC	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp143I	GATC	3 cut(s)	354, 585, 1024
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	6 cut(s)	92, 484, 593, 713, 830, 846
BspCNI	CTCAG	2 cut(s)	267, 914
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	5 cut(s)	180, 574, 630, 631, 713
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	2 cut(s)	74, 956
BspQI	GCTCTTC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	2 cut(s)	63, 683
BsrI	ACTGG	3 cut(s)	506, 566, 805
BssECI	CCNNGG	2 cut(s)	174, 423
BssMI	GATC	3 cut(s)	354, 585, 1024
BssT1I	CCWWGG	2 cut(s)	174, 423
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	68, 550
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstDEI	CTNAG	4 cut(s)	102, 250, 275, 901
BstF5I	GGATG	3 cut(s)	390, 693, 758
BstKTI	GATC	3 cut(s)	357, 588, 1027
BstMAI	GTCTC	3 cut(s)	259, 552, 974
BstMBI	GATC	3 cut(s)	354, 585, 1024
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 89, 170, 185, 323, 599, 687, 710
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	5 cut(s)	119, 313, 341, 677, 804
BstV2I	GAAGAC	1 cut(s)	889
BstXI	CCANNNNNNTGG	2 cut(s)	741, 931
BsuRI	GGCC	6 cut(s)	92, 484, 593, 713, 830, 846
BtsCI	GGATG	3 cut(s)	390, 693, 758
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	2 cut(s)	74, 956
CciI	TCATGA	1 cut(s)	582
Cfr13I	GGNCC	7 cut(s)	482, 629, 711, 712, 828, 845, 1003
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	367, 583, 603, 910
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	102, 250, 275, 901
DpnI	GATC	3 cut(s)	356, 587, 1026
DpnII	GATC	3 cut(s)	354, 585, 1024
DraI	TTTAAA	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	68, 550
EarI	CTCTTC	2 cut(s)	68, 550
Eco130I	CCWWGG	2 cut(s)	174, 423
Eco24I	GRGCYC	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	974
Eco47I	GGWCC	2 cut(s)	629, 1003
Eco57I	CTGAAG	1 cut(s)	670
EcoO109I	RGGNCCY	3 cut(s)	482, 629, 712
EcoT14I	CCWWGG	2 cut(s)	174, 423
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	2 cut(s)	174, 423
FaeI	CATG	4 cut(s)	370, 586, 606, 913
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 233, 265
FaqI	GGGAC	2 cut(s)	615, 770
FatI	CATG	4 cut(s)	366, 582, 602, 909
FbaI	TGATCA	1 cut(s)	1024
Fnu4HI	GCNGC	5 cut(s)	108, 327, 330, 691, 818
FokI	GGATG	3 cut(s)	397, 680, 765
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	5 cut(s)	108, 327, 330, 691, 818
FspBI	CTAG	1 cut(s)	959
GluI	GCNGC	5 cut(s)	108, 327, 330, 691, 818
HaeIII	GGCC	6 cut(s)	92, 484, 593, 713, 830, 846
HapII	CCGG	3 cut(s)	650, 848, 1046
Hin1II	CATG	4 cut(s)	370, 586, 606, 913
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	3 cut(s)	650, 848, 1046
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	1 cut(s)	944
Hpy188III	TCNNGA	2 cut(s)	453, 583
Hpy8I	GTNNAC	1 cut(s)	867
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 89, 170, 185, 323, 599, 687, 710
HpyF3I	CTNAG	4 cut(s)	102, 250, 275, 901
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	4 cut(s)	370, 586, 606, 913
KflI	GGGWCCC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	3 cut(s)	354, 585, 1024
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	184, 220, 455
Lsp1109I	GCAGC	5 cut(s)	119, 313, 341, 677, 804
LweI	GCATC	2 cut(s)	702, 869
MaeI	CTAG	1 cut(s)	959
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	3 cut(s)	356, 587, 1026
MboI	GATC	3 cut(s)	354, 585, 1024
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	5 cut(s)	111, 345, 525, 618, 792
MlyI	GAGTC	1 cut(s)	426
MseI	TTAA	5 cut(s)	281, 344, 380, 566, 617
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	690
MspI	CCGG	3 cut(s)	650, 848, 1046
MspR9I	CCNGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	8 cut(s)	53, 89, 170, 185, 323, 599, 687, 710
NciI	CCSGG	1 cut(s)	848
NdeII	GATC	3 cut(s)	354, 585, 1024
NlaIII	CATG	4 cut(s)	370, 586, 606, 913
NlaIV	GGNNCC	5 cut(s)	180, 574, 630, 631, 713
NmeAIII	GCCGAG	1 cut(s)	569
PagI	TCATGA	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	68
PkrI	GCNGC	5 cut(s)	109, 328, 331, 692, 819
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	629
PsiI	TTATAA	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	629
PspN4I	GGNNCC	5 cut(s)	180, 574, 630, 631, 713
PspOMI	GGGCCC	1 cut(s)	711
PspPI	GGNCC	7 cut(s)	482, 629, 711, 712, 828, 845, 1003
PspPPI	RGGWCCY	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	690
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	281, 344, 380, 566, 617
SatI	GCNGC	5 cut(s)	108, 327, 330, 691, 818
Sau3AI	GATC	3 cut(s)	354, 585, 1024
Sau96I	GGNCC	7 cut(s)	482, 629, 711, 712, 828, 845, 1003
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	702, 869
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	629, 1003
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	111, 345, 525, 618, 792
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	2 cut(s)	174, 423
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	362
TasI	AATT	5 cut(s)	111, 345, 525, 618, 792
Tru1I	TTAA	5 cut(s)	281, 344, 380, 566, 617
Tru9I	TTAA	5 cut(s)	281, 344, 380, 566, 617
TscAI	CASTG	1 cut(s)	862
TseI	GCWGC	5 cut(s)	107, 326, 329, 690, 817
TspDTI	ATGAA	7 cut(s)	26, 32, 55, 140, 355, 416, 752
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	629, 1003
XapI	RAATTY	1 cut(s)	525
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.