Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

1950079 .. 1953664

Gene Structure 3586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGAGTTTAGTAATGGAGAGTCATAAGGCTTATATTGCAATGCTCTTCATACAATTTGTGTATGCAGGTATGGCCTTGTTCTCTAAGGCAGCAATTTCTAAAGGAATGAACCCCTTTGTCTTTGTGGTTTATCGTCAAGCTTTTGCCTCCTTTGCCTTGGCTCCCTTTGCTTTCTTCCTTGAAAGTTCAATAGAAGCTCCTCTTTCCTACACCTTACTCTGCAAGATTTTCTTAGTTTCCTTATCTGGGATTACCCTGAGTTTAAATCTCTACTATGTTGCAATCAACTACACCTCTGCAACCTTTGCTGCAGCCACCACCACTTTAATTCCTGCAATCACTTTTGTCATGGCGGTTTTATTAAGGATGGAAAGCATTTCTGTGAAACGTTTGTATGGAGTGGCCAAGGTGTTGGGTTCTGTCACAAGCCTTTCAGGAGCATTGGTGTTTGCCTTAGTGAAAGGGCCCTCCATAAAGTTCAACTGGGTTCCATCAAATCAAGGGCAAATTCCAGACTCCTCCTCATTATCTTCCTCCACAGGAGGAGAGTGGTTAAAAGGTTCCCTCATCATGCTCTCAGCCAATACTGCATGGTCTTTGTGGCTAATTCTGCAGGGTCCCATTATCAAGCAATATCCGGCAAAGTTGAGGCTCACCACTCTCCAATGCTTCTTCAGCTGCTTGATGTCAGCTTGCTGGGCCATTGCATTTGAGAGAAATCCATCAGCTTGGAAGATTGGATGGGACATTCATCTTCTCTCTGTGGTCTATTGTGGCGTAGTTGTAACTGGGATTACTTATTGGCTACAAGTTTGGGCAATAGAGAAGAAAGGCCCAGTTTTCACTGCAATGTTCACTCCATTATCACTAATTATAACAGCCATCTTCTCAGCATTGATATGGAAAGAAGCCATCTACTGGGCAAGTATTGGAGGGGGTGTATTGCTGATTGCGGGTCTCTATAGCGTTTTGTGGGGAAAGATGAAAGAGGAACAAAAAAGCAAAGAAAGTGATCAAAAACAAGAAAACAAGCAAGAAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

350

Amino Acids

38.42

Weight (kDa)

9.36

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
Acc36I	ACCTGC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	921
AciI	CCGC	2 cut(s)	356, 956
AclI	AACGTT	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	661
AfiI	CCNNNNNNNGG	2 cut(s)	249, 921
AgsI	TTSAA	3 cut(s)	185, 192, 484
AluBI	AGCT	5 cut(s)	143, 200, 681, 695, 731
AluI	AGCT	5 cut(s)	143, 200, 681, 695, 731
Alw26I	GTCTC	1 cut(s)	965
AoxI	GGCC	5 cut(s)	75, 405, 467, 702, 835
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	4 cut(s)	92, 311, 314, 681
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	5 cut(s)	467, 468, 620, 702, 836
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	104, 298, 326, 668
BccI	CCATC	6 cut(s)	364, 502, 733, 738, 893, 923
BclI	TGATCA	1 cut(s)	1015
BcoDI	GTCTC	1 cut(s)	965
BfmI	CTRYAG	3 cut(s)	312, 614, 964
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	93, 312, 315, 682
BlsI	GCNGC	4 cut(s)	94, 313, 316, 683
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	5 cut(s)	467, 468, 620, 702, 836
BmiI	GGNNCC	6 cut(s)	165, 469, 492, 565, 621, 622
BmrI	ACTGGG	4 cut(s)	496, 801, 833, 931
BmuI	ACTGGG	4 cut(s)	496, 801, 833, 931
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	2 cut(s)	159, 408
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 927, 957
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 921
Bse1I	ACTGG	4 cut(s)	491, 796, 839, 926
Bse3DI	GCAATG	3 cut(s)	48, 705, 858
BseDI	CCNNGG	2 cut(s)	159, 408
BseGI	GGATG	2 cut(s)	375, 749
BseLI	CCNNNNNNNGG	2 cut(s)	249, 921
BseMI	GCAATG	3 cut(s)	48, 705, 858
BseMII	CTCAG	3 cut(s)	251, 594, 906
BseNI	ACTGG	4 cut(s)	491, 796, 839, 926
BseRI	GAGGAG	4 cut(s)	192, 511, 514, 561
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	4 cut(s)	104, 298, 326, 668
BseYI	CCCAGC	1 cut(s)	699
BshFI	GGCC	5 cut(s)	77, 407, 469, 704, 837
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	2 cut(s)	606, 761
BslI	CCNNNNNNNGG	2 cut(s)	249, 921
BsmAI	GTCTC	1 cut(s)	965
BsmFI	GGGAC	2 cut(s)	606, 761
BsnI	GGCC	5 cut(s)	77, 407, 469, 704, 837
Bso31I	GGTCTC	1 cut(s)	965
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	1015
BspACI	CCGC	2 cut(s)	356, 956
BspANI	GGCC	5 cut(s)	77, 407, 469, 704, 837
BspCNI	CTCAG	3 cut(s)	252, 593, 905
BspLI	GGNNCC	6 cut(s)	165, 469, 492, 565, 621, 622
BspMAI	CTGCAG	2 cut(s)	316, 618
BspMI	ACCTGC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	965
BsrDI	GCAATG	3 cut(s)	48, 705, 858
BsrI	ACTGG	4 cut(s)	491, 796, 839, 926
BssECI	CCNNGG	2 cut(s)	159, 408
BssMI	GATC	1 cut(s)	1015
BssT1I	CCWWGG	2 cut(s)	159, 408
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	6 cut(s)	87, 235, 260, 457, 580, 892
BstF5I	GGATG	2 cut(s)	375, 749
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	1 cut(s)	965
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 74, 155, 170, 308, 590, 613, 678, 701
BstSFI	CTRYAG	3 cut(s)	312, 614, 964
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	104, 298, 326, 668
BstXI	CCANNNNNNTGG	2 cut(s)	415, 732
BsuRI	GGCC	5 cut(s)	77, 407, 469, 704, 837
BtsCI	GGATG	2 cut(s)	375, 749
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	846
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	697
Cfr13I	GGNCC	5 cut(s)	467, 468, 620, 702, 836
CviAII	CATG	3 cut(s)	352, 574, 594
DdeI	CTNAG	6 cut(s)	87, 235, 260, 457, 580, 892
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	159, 408
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	965
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	661
EcoO109I	RGGNCCY	3 cut(s)	467, 468, 620
EcoT14I	CCWWGG	2 cut(s)	159, 408
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	159, 408
FaeI	CATG	3 cut(s)	355, 577, 597
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 218, 250
FaqI	GGGAC	2 cut(s)	606, 761
FatI	CATG	3 cut(s)	351, 573, 593
FauI	CCCGC	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	1015
Fnu4HI	GCNGC	4 cut(s)	93, 312, 315, 682
FokI	GGATG	2 cut(s)	382, 756
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	93, 312, 315, 682
GluI	GCNGC	4 cut(s)	93, 312, 315, 682
GsaI	CCCAGC	1 cut(s)	703
HaeIII	GGCC	5 cut(s)	77, 407, 469, 704, 837
HapII	CCGG	1 cut(s)	641
Hin1II	CATG	3 cut(s)	355, 577, 597
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	2 cut(s)	22, 518
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188III	TCNNGA	2 cut(s)	438, 515
Hpy8I	GTNNAC	1 cut(s)	858
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 74, 155, 170, 308, 590, 613, 678, 701
HpyF3I	CTNAG	6 cut(s)	87, 235, 260, 457, 580, 892
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	355, 577, 597
KflI	GGGWCCC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	1 cut(s)	1015
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	3 cut(s)	169, 205, 440
Lsp1109I	GCAGC	4 cut(s)	104, 298, 326, 668
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	2 cut(s)	424, 787
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MboII	GAAGA	9 cut(s)	16, 40, 169, 525, 667, 748, 749, 841, 880
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	6 cut(s)	56, 96, 330, 510, 609, 873
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	31, 512
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	4 cut(s)	266, 329, 365, 557
MslI	CAYNNNNRTG	3 cut(s)	383, 851, 901
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	9 cut(s)	38, 74, 155, 170, 308, 590, 613, 678, 701
NdeII	GATC	1 cut(s)	1015
NlaIII	CATG	3 cut(s)	355, 577, 597
NlaIV	GGNNCC	6 cut(s)	165, 469, 492, 565, 621, 622
NmuCI	GTSAC	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	921
PkrI	GCNGC	4 cut(s)	94, 313, 316, 683
PleI	GAGTC	2 cut(s)	30, 512
PpsI	GAGTC	2 cut(s)	30, 512
PpuMI	RGGWCCY	1 cut(s)	620
PsiI	TTATAA	1 cut(s)	878
Psp1406I	AACGTT	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	699
PspN4I	GGNNCC	6 cut(s)	165, 469, 492, 565, 621, 622
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	5 cut(s)	467, 468, 620, 702, 836
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	2 cut(s)	316, 618
PvuII	CAGCTG	1 cut(s)	681
RseI	CAYNNNNRTG	3 cut(s)	383, 851, 901
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	266, 329, 365, 557
SatI	GCNGC	4 cut(s)	93, 312, 315, 682
Sau3AI	GATC	1 cut(s)	1015
Sau96I	GGNCC	5 cut(s)	467, 468, 620, 702, 836
SchI	GAGTC	2 cut(s)	31, 512
SduI	GDGCHC	1 cut(s)	471
SfcI	CTRYAG	3 cut(s)	312, 614, 964
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	3 cut(s)	383, 851, 901
Sse9I	AATT	6 cut(s)	56, 96, 330, 510, 609, 873
SsiI	CCGC	2 cut(s)	356, 956
StyI	CCWWGG	2 cut(s)	159, 408
TaiI	ACGT	1 cut(s)	394
TasI	AATT	6 cut(s)	56, 96, 330, 510, 609, 873
Tru1I	TTAA	4 cut(s)	266, 329, 365, 557
Tru9I	TTAA	4 cut(s)	266, 329, 365, 557
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	92, 311, 314, 681
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	17, 40, 125, 743, 1001
TspRI	CASTG	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.