Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Reverse (-)

34997474 .. 35000429

Gene Structure 2956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG211100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGAGTTTAAGCTATGCAATATCTGTGGCAGCTGAGAAGCATAAAGTCTATATTGCAATGATCTTCATACAATTCGTGTATGCTGGCATGGCCTTGTTTTCTAAGGCAGCAGTTTCTAAAGGAATGAACCCTTTTGTCTTTGTGGTCTATCGCCAAGCTTTCGCCTTCCTTGCCTTGGCTCCATTTGCTTTCTTCTTTGAAAGTTCAAAAGAAGTTCCTCTTTCCTATACCTTACTCATCAAGATTTTCTTTATTTCCTTATTTGGGATTACACTGAGTTTAAATCTGTACTATGTTGCAATCAACTACACCTCTGCAACTTTTGCTGCAGCCACCACCACTGCAATTCCTGCAATTACTTTTGTTATGGCAGTTTTATTAAGGATGGAAAGCATTTCGATAAAACATTTGCATGGTGTGGCCAAGGTGTTGGGTTCTGTTACCAGCCTTTCAGGGGCTGTGGTATATGCTTTAATCAAGGGGCCTCCATTAAAGTTCATGAACTGGTTTCCAGAAAATCTAGACCACCAAATCCATCCAAAGAGTTCCTGCAGAGGGGAGTGGATTAAAGGTTCCCTCATTATGCTCTCAGCCAACACTGCTTGGTCTTTGTGGCTAATTTTGCAGGGTCCAATTGTGAAGGAATATCCAGCAAAGTTGAGGCTTACTGCTCTGCAGTGCTTCTTTAGTTGCATGCAGTCTGCTTTCTGGACAATTGTGGTTGAGAGAAGGCCTTCAGCTTGGAAGATTGGATGGGACATTCATCTTCTAGCTGTGGTCTACTGTGTGAGTCATTTCTATTTTTCGAGCCAGAAAATATTCTTTGCATACAGCCGATGTATACAACATTCATCTCACAAGTCATTTCATCCGTCCATTGTCTGCAAAACTATTCTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

301

Amino Acids

33.89

Weight (kDa)

9.64

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 149	7.2e-16	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	783, 844
AcoI	YGGCCR	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	178, 267, 457, 558
AgsI	TTSAA	2 cut(s)	203, 210
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	5 cut(s)	15, 35, 161, 743, 776
AluI	AGCT	5 cut(s)	15, 35, 161, 743, 776
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	93, 423, 485, 734
ApeKI	GCWGC	4 cut(s)	32, 110, 329, 332
Asp700I	GAANNNNTTC	2 cut(s)	736, 821
AspS9I	GGNCC	2 cut(s)	485, 632
AvaII	GGWCC	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	44, 122, 316, 344
BccI	CCATC	3 cut(s)	382, 546, 750
BfaI	CTAG	2 cut(s)	524, 773
BfmI	CTRYAG	3 cut(s)	330, 553, 677
BisI	GCNGC	4 cut(s)	33, 111, 330, 333
BlsI	GCNGC	4 cut(s)	34, 112, 331, 334
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	485, 632
BmiI	GGNNCC	4 cut(s)	183, 486, 577, 633
BsaJI	CCNNGG	2 cut(s)	177, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 267, 457, 558
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	177, 426
BseGI	GGATG	4 cut(s)	393, 538, 761, 871
BseLI	CCNNNNNNNGG	4 cut(s)	178, 267, 457, 558
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	27, 269, 606
BseNI	ACTGG	1 cut(s)	512
BseXI	GCAGC	4 cut(s)	44, 122, 316, 344
BshFI	GGCC	4 cut(s)	95, 425, 487, 736
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	4 cut(s)	178, 267, 457, 558
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	4 cut(s)	95, 425, 487, 736
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	4 cut(s)	95, 425, 487, 736
BspCNI	CTCAG	3 cut(s)	28, 270, 605
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	4 cut(s)	183, 486, 577, 633
BspMAI	CTGCAG	3 cut(s)	334, 557, 681
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	177, 426
BssMI	GATC	1 cut(s)	63
BssNAI	GTATAC	1 cut(s)	845
BssT1I	CCWWGG	2 cut(s)	177, 426
Bst1107I	GTATAC	1 cut(s)	845
Bst4CI	ACNGT	1 cut(s)	788
BstAPI	GCANNNNNTGC	2 cut(s)	326, 353
BstC8I	GCNNGC	2 cut(s)	88, 698
BstDEI	CTNAG	4 cut(s)	36, 105, 278, 592
BstF5I	GGATG	4 cut(s)	393, 538, 761, 871
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
BstNSI	RCATGY	1 cut(s)	700
BstSFI	CTRYAG	3 cut(s)	330, 553, 677
BstV1I	GCAGC	4 cut(s)	44, 122, 316, 344
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	845
BsuRI	GGCC	4 cut(s)	95, 425, 487, 736
BtsCI	GGATG	4 cut(s)	393, 538, 761, 871
BtsI	GCAGTG	3 cut(s)	342, 600, 686
BtsIMutI	CAGTG	4 cut(s)	275, 342, 600, 686
Cac8I	GCNNGC	2 cut(s)	88, 698
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	485, 632
Csp6I	GTAC	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	91, 416, 502, 697
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	36, 105, 278, 592
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	177, 426
Eco147I	AGGCCT	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	177, 426
ErhI	CCWWGG	2 cut(s)	177, 426
FaeI	CATG	4 cut(s)	94, 419, 505, 700
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 236, 268
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	4 cut(s)	90, 415, 501, 696
FblI	GTMKAC	2 cut(s)	783, 844
Fnu4HI	GCNGC	4 cut(s)	33, 111, 330, 333
FokI	GGATG	4 cut(s)	400, 525, 768, 858
Fsp4HI	GCNGC	4 cut(s)	33, 111, 330, 333
FspBI	CTAG	2 cut(s)	524, 773
GluI	GCNGC	4 cut(s)	33, 111, 330, 333
HaeIII	GGCC	4 cut(s)	95, 425, 487, 736
Hin1II	CATG	4 cut(s)	94, 419, 505, 700
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	793
Hpy166II	GTNNAC	2 cut(s)	784, 845
Hpy188III	TCNNGA	5 cut(s)	244, 502, 515, 524, 712
Hpy8I	GTNNAC	2 cut(s)	784, 845
HpyAV	CCTTC	4 cut(s)	178, 637, 726, 747
HpyCH4III	ACNGT	1 cut(s)	788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
HpyF3I	CTNAG	4 cut(s)	36, 105, 278, 592
Hsp92II	CATG	4 cut(s)	94, 419, 505, 700
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	44, 122, 316, 344
MaeI	CTAG	2 cut(s)	524, 773
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	5 cut(s)	16, 58, 187, 760, 761
MfeI	CAATTG	2 cut(s)	636, 717
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	6 cut(s)	74, 348, 357, 621, 636, 717
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	802
MnlI	CCTC	6 cut(s)	231, 325, 498, 551, 590, 657
Mox20I	TGGCCA	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	736, 821
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	35
MunI	CAATTG	2 cut(s)	636, 717
MwoI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	4 cut(s)	94, 419, 505, 700
NlaIV	GGNNCC	4 cut(s)	183, 486, 577, 633
NspI	RCATGY	1 cut(s)	700
PaeI	GCATGC	1 cut(s)	700
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	736
PdmI	GAANNNNTTC	2 cut(s)	736, 821
PkrI	GCNGC	4 cut(s)	34, 112, 331, 334
PleI	GAGTC	1 cut(s)	801
PpsI	GAGTC	1 cut(s)	801
PspN4I	GGNNCC	4 cut(s)	183, 486, 577, 633
PspPI	GGNCC	2 cut(s)	485, 632
PstI	CTGCAG	3 cut(s)	334, 557, 681
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
SatI	GCNGC	4 cut(s)	33, 111, 330, 333
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	2 cut(s)	485, 632
SchI	GAGTC	1 cut(s)	802
SetI	ASST	9 cut(s)	17, 37, 163, 236, 317, 432, 577, 745, 778
SfcI	CTRYAG	3 cut(s)	330, 553, 677
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	414
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	6 cut(s)	74, 348, 357, 621, 636, 717
SseBI	AGGCCT	1 cut(s)	736
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	2 cut(s)	524, 773
StuI	AGGCCT	1 cut(s)	736
StyI	CCWWGG	2 cut(s)	177, 426
TaaI	ACNGT	1 cut(s)	788
TaqI	TCGA	2 cut(s)	401, 809
TasI	AATT	6 cut(s)	74, 348, 357, 621, 636, 717
TatI	WGTACW	1 cut(s)	291
Tru1I	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
Tru9I	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
TscAI	CASTG	4 cut(s)	282, 349, 607, 686
TseI	GCWGC	4 cut(s)	32, 110, 329, 332
TspDTI	ATGAA	8 cut(s)	17, 58, 143, 490, 518, 755, 843, 860
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	4 cut(s)	282, 349, 607, 686
VpaK11BI	GGWCC	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	700
XmiI	GTMKAC	2 cut(s)	783, 844
XmnI	GAANNNNTTC	2 cut(s)	736, 821
XspI	CTAG	2 cut(s)	524, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.