Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

12397411 .. 12398359

Gene Structure 949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGCGATGAGTTAGCCCATGACTTCTCTCCTCTCTTTAAAATCTACAAAGATGGTCGAATTGAGCGACTCATGGGCACAGATACAGTTCCTCCATCAGTTCATCCCCAAACTGGTGTCGAATCCAAAGACGTCATGATTTCAAACGAAACAGGATTATATGCTAGGCTTTACATCCCCAAATCCACCACAACCTCTTCCACCAAACTCCCTCTTCTTGTTTACTTCCACGGCGGCGGCTTCTGTGTTGAAACTGCCTCTTCTCCTACTTACCACAACTACCTCAACTCCTTAGTAGTGGAAGCTAATGTTGTTGCTGTGTCTGTTGACTCTAGGAGAGTCCCAGAGTACCCTCTGCCTGTTGCCTACAATGATTCCTGGGATGCTCTCAAATGGGTTGCTTCTCATTCTGATGGAAGTGGCTCTGAGGAGTGGCTAAATAACCATGCAGATTTTCAGAAACTGTTCTTCTCTGGTGATAGTTCTGGTGGTAATATAGTGCATAACATGGCTGTGAAAGTCGGCTCTGAAGGCTTGGTTGGTGTTAAGCTCATAGGGATTGTGCTGGTGCATCCCTTTCTTTGGGGAAAAGAACCAATTCGGGGAGAGTCAACTCTGCCTGCAGTTCAAAGAGACGGATCTGATGATCCGCTTCTCAATCCGGGTAAGGATCCGAAATTGGGTGGATTGGGGTGTGAGAAAGTGTTGGTTTGTGTTGCTGAGAATGATACATTGAAACATAGAAACTGGTATTACAGTGAGGTCCTTAGAAAGAGTGGATGGAAAGGCGCTGTGGAGGTCTTGGAAGCAAAGGGGGAGGGGGGCCATGTTTTCCATTTGTTCAATCCAACTTGTGACAGTGCTCAGGCCATGCTGAAAAAGATCACTTCTTTCATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

300

Amino Acids

32.82

Weight (kDa)

5.87

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	42 - 110	9.3e-08	Carboxylesterase family
BD-FAE	PF20434	58 - 173	8.3e-09	BD-FAE
Abhydrolase_3	PF07859	73 - 279	7.6e-42	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AciI	CCGC	3 cut(s)	234, 237, 650
AclWI	GGATC	4 cut(s)	641, 646, 665, 678
AcuI	CTGAAG	1 cut(s)	549
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	113, 582, 602, 680
AgsI	TTSAA	5 cut(s)	144, 251, 629, 736, 844
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	2 cut(s)	305, 550
AluI	AGCT	2 cut(s)	305, 550
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	4 cut(s)	641, 646, 665, 678
AlwNI	CAGNNNCTG	1 cut(s)	463
AoxI	GGCC	2 cut(s)	823, 867
Asp700I	GAANNNNTTC	2 cut(s)	464, 597
AspLEI	GCGC	1 cut(s)	791
AspS9I	GGNCC	2 cut(s)	763, 823
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	865
BccI	CCATC	4 cut(s)	47, 103, 407, 774
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	2 cut(s)	165, 333
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	792
BisI	GCNGC	2 cut(s)	235, 238
BlsI	GCNGC	2 cut(s)	236, 239
Bme1390I	CCNGG	2 cut(s)	379, 663
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	763, 823
BmiI	GGNNCC	2 cut(s)	672, 824
BmrFI	CCNGG	2 cut(s)	379, 663
BmsI	GCATC	2 cut(s)	373, 580
Bpu10I	CCTNAGC	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	229, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 272, 302
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 582, 602, 680
Bse1I	ACTGG	2 cut(s)	118, 752
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	229, 378
BseGI	GGATG	5 cut(s)	103, 174, 388, 571, 785
BseLI	CCNNNNNNNGG	4 cut(s)	113, 582, 602, 680
BseMII	CTCAG	3 cut(s)	417, 711, 878
BseNI	ACTGG	2 cut(s)	118, 752
BseRI	GAGGAG	2 cut(s)	21, 443
BseSI	GKGCMC	1 cut(s)	80
BshFI	GGCC	2 cut(s)	825, 869
BsiHKAI	GWGCWC	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	113, 582, 602, 680
BsmAI	GTCTC	1 cut(s)	627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	825, 869
Bsp1286I	GDGCHC	2 cut(s)	80, 865
Bsp143I	GATC	4 cut(s)	638, 646, 670, 882
BspACI	CCGC	3 cut(s)	234, 237, 650
BspANI	GGCC	2 cut(s)	825, 869
BspCNI	CTCAG	3 cut(s)	418, 712, 877
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	672, 824
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	4 cut(s)	641, 646, 665, 678
BsrI	ACTGG	2 cut(s)	118, 752
BssECI	CCNNGG	2 cut(s)	229, 378
BssMI	GATC	4 cut(s)	638, 646, 670, 882
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	88, 465, 758, 860
Bst6I	CTCTTC	3 cut(s)	202, 219, 265
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	5 cut(s)	292, 426, 720, 767, 864
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	5 cut(s)	103, 174, 388, 571, 785
BstH2I	RGCGCY	1 cut(s)	792
BstHHI	GCGC	1 cut(s)	791
BstKTI	GATC	4 cut(s)	641, 649, 673, 885
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	4 cut(s)	638, 646, 670, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	377, 661
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	638, 670
BstYI	RGATCY	2 cut(s)	638, 670
BsuRI	GGCC	2 cut(s)	825, 869
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	5 cut(s)	103, 174, 388, 571, 785
BtsIMutI	CAGTG	2 cut(s)	763, 865
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	463
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	791
Cfr13I	GGNCC	2 cut(s)	763, 823
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	7 cut(s)	20, 73, 136, 446, 508, 827, 871
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	5 cut(s)	292, 426, 720, 767, 864
DpnI	GATC	4 cut(s)	640, 648, 672, 884
DpnII	GATC	4 cut(s)	638, 646, 670, 882
DraI	TTTAAA	1 cut(s)	40
Eam1104I	CTCTTC	3 cut(s)	202, 219, 265
EarI	CTCTTC	3 cut(s)	202, 219, 265
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	7 cut(s)	23, 76, 139, 449, 511, 830, 874
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	7 cut(s)	19, 72, 135, 445, 507, 826, 870
Fnu4HI	GCNGC	2 cut(s)	235, 238
FokI	GGATG	5 cut(s)	90, 161, 395, 558, 792
Fsp4HI	GCNGC	2 cut(s)	235, 238
FspBI	CTAG	2 cut(s)	165, 333
GlaI	GCGC	1 cut(s)	790
GluI	GCNGC	2 cut(s)	235, 238
HaeII	RGCGCY	1 cut(s)	792
HaeIII	GGCC	2 cut(s)	825, 869
HapII	CCGG	1 cut(s)	662
HhaI	GCGC	1 cut(s)	791
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	23, 76, 139, 449, 511, 830, 874
Hin6I	GCGC	1 cut(s)	789
HinP1I	GCGC	1 cut(s)	789
HincII	GTYRAC	2 cut(s)	328, 612
HindII	GTYRAC	2 cut(s)	328, 612
HinfI	GANTC	6 cut(s)	69, 122, 329, 339, 374, 608
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	3 cut(s)	223, 328, 612
Hpy188I	TCNGA	6 cut(s)	412, 427, 459, 529, 643, 675
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	223, 328, 612
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	4 cut(s)	88, 465, 758, 860
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	449, 502, 571, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	5 cut(s)	292, 426, 720, 767, 864
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	23, 76, 139, 449, 511, 830, 874
HspAI	GCGC	1 cut(s)	789
Kzo9I	GATC	4 cut(s)	638, 646, 670, 882
LweI	GCATC	2 cut(s)	373, 580
MaeI	CTAG	2 cut(s)	165, 333
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	854
MalI	GATC	4 cut(s)	640, 648, 672, 884
MboI	GATC	4 cut(s)	638, 646, 670, 882
MboII	GAAGA	4 cut(s)	189, 206, 252, 460
MflI	RGATCY	2 cut(s)	638, 670
MhlI	GDGCHC	2 cut(s)	80, 865
MluCI	AATT	4 cut(s)	60, 597, 677, 898
MlyI	GAGTC	4 cut(s)	63, 323, 348, 617
MmeI	TCCRAC	1 cut(s)	872
MroXI	GAANNNNTTC	2 cut(s)	464, 597
MseI	TTAA	2 cut(s)	39, 546
MslI	CAYNNNNRTG	2 cut(s)	411, 512
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	2 cut(s)	379, 663
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	531
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	4 cut(s)	638, 646, 670, 882
NlaIII	CATG	7 cut(s)	23, 76, 139, 449, 511, 830, 874
NlaIV	GGNNCC	2 cut(s)	672, 824
NmuCI	GTSAC	1 cut(s)	854
PagI	TCATGA	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	464, 597
PfeI	GAWTC	2 cut(s)	122, 374
PkrI	GCNGC	2 cut(s)	236, 239
PleI	GAGTC	4 cut(s)	63, 323, 347, 616
PpsI	GAGTC	4 cut(s)	63, 323, 347, 616
PpuMI	RGGWCCY	1 cut(s)	763
Psp5II	RGGWCCY	1 cut(s)	763
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	672, 824
PspPI	GGNCC	2 cut(s)	763, 823
PspPPI	RGGWCCY	1 cut(s)	763
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	638, 670
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	411, 512
SaqAI	TTAA	2 cut(s)	39, 546
SatI	GCNGC	2 cut(s)	235, 238
Sau3AI	GATC	4 cut(s)	638, 646, 670, 882
Sau96I	GGNCC	2 cut(s)	763, 823
SchI	GAGTC	4 cut(s)	63, 323, 348, 617
ScrFI	CCNGG	2 cut(s)	379, 663
SduI	GDGCHC	2 cut(s)	80, 865
SetI	ASST	7 cut(s)	135, 197, 285, 307, 552, 765, 801
SfaNI	GCATC	2 cut(s)	373, 580
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	2 cut(s)	411, 512
Sse9I	AATT	4 cut(s)	60, 597, 677, 898
SsiI	CCGC	3 cut(s)	234, 237, 650
SspMI	CTAG	2 cut(s)	165, 333
StyD4I	CCNGG	2 cut(s)	377, 661
TaaI	ACNGT	4 cut(s)	88, 465, 758, 860
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	58, 120
TasI	AATT	4 cut(s)	60, 597, 677, 898
TauI	GCSGC	2 cut(s)	237, 240
TfiI	GAWTC	2 cut(s)	122, 374
Tru1I	TTAA	2 cut(s)	39, 546
Tru9I	TTAA	2 cut(s)	39, 546
TscAI	CASTG	2 cut(s)	763, 865
TseFI	GTSAC	1 cut(s)	854
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	2 cut(s)	92, 883
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	763, 865
VpaK11BI	GGWCC	1 cut(s)	763
XmnI	GAANNNNTTC	2 cut(s)	464, 597
XspI	CTAG	2 cut(s)	165, 333
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.