Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Reverse (-)

36709486 .. 36712377

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTACAAATTTGTAGGATTACACTGAGTTTAAATCTGTACTATGTTGCAATCAACTACACCTCTGCAACTTTTGCTGCAGCCACCACCACTGCAATTCCTGCAATTACTTTTGTTATGGCAGTTTTATTAAGGATGGAAAGCATTTCGATAAAACATTTGCATGGTGTGGCCAAGGTGTTGGGTTCTGTTACCAGCCTTTCAGGGGCTGTGGTATATGCTTTAATCAAGGGGCCTCCATTAAAGTTCATGAACTGGTTTCCAGAAAATCTAGACCACCAAATCCATCCAAAGAGTTCCTGCAGAGGGGAGTGGATTAAAGGTTCCCTCATTATGCTCTCAGCCAACACTGCTTGGTCTTTGTGGCTAATTTTGCAGGGTCCAATTGTGAAGGAATATCCAGCAAAGTTGAGGCTTACTGCTCTGCAGTGCTTCTTTAGTTGCATGCAGTCTGCTTTCTGGACAATTGCGATTGAGAGAAGGCCTTCAGCTTGGAAGATTGGATGGGACATTCATCTTCTAGCTGTGGTCTACTGTGGTGTAATTGTAACCGGGATTACTTACTGGCTACAAGTTTGGGCCATACAGAAGAAAGGTCCAGTTTTCACAGCAATGTTCACTCCTTTAGCACTAATTATAACAGCAATATTCTCAGCAATCCTGTGGAAAGAAGCCATCTACTGGGGAAGTATTGGTGGAGGCGTATTGCTGGTTGCTGGTCTCTATAGCGTGTTGTGGGGAAAGAAAAAGGAGGACCAGAAAAGTAGAGAAAATGAGCAAAAACAAGAAAACAAGGAGGAAGTACTCATCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

271

Amino Acids

30.29

Weight (kDa)

9.4

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	107 - 245	2.3e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	2 cut(s)	41, 804
AfiI	CCNNNNNNNGG	3 cut(s)	205, 306, 681
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
AluBI	AGCT	2 cut(s)	491, 524
AluI	AGCT	2 cut(s)	491, 524
Alw26I	GTCTC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	4 cut(s)	171, 233, 482, 579
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	484
AspS9I	GGNCC	5 cut(s)	233, 380, 579, 596, 754
AsuC2I	CCSGG	1 cut(s)	553
AvaII	GGWCC	3 cut(s)	380, 596, 754
BalI	TGGCCA	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	64, 92
BccI	CCATC	4 cut(s)	130, 294, 498, 683
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	2 cut(s)	272, 521
BfmI	CTRYAG	4 cut(s)	78, 301, 425, 724
BisI	GCNGC	2 cut(s)	78, 81
BlsI	GCNGC	2 cut(s)	79, 82
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	1 cut(s)	553
Bme18I	GGWCC	3 cut(s)	380, 596, 754
BmgT120I	GGNCC	5 cut(s)	233, 380, 579, 596, 754
BmiI	GGNNCC	3 cut(s)	234, 325, 381
BmrFI	CCNGG	1 cut(s)	553
BmrI	ACTGGG	1 cut(s)	691
BmuI	ACTGGG	1 cut(s)	691
BpuMI	CCSGG	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 306, 681
Bse1I	ACTGG	4 cut(s)	260, 569, 599, 686
Bse3DI	GCAATG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	3 cut(s)	141, 286, 509
BseLI	CCNNNNNNNGG	3 cut(s)	205, 306, 681
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	3 cut(s)	17, 354, 666
BseNI	ACTGG	4 cut(s)	260, 569, 599, 686
BseXI	GCAGC	2 cut(s)	64, 92
BshFI	GGCC	4 cut(s)	173, 235, 484, 581
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	205, 306, 681
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	4 cut(s)	173, 235, 484, 581
Bso31I	GGTCTC	1 cut(s)	725
BspANI	GGCC	4 cut(s)	173, 235, 484, 581
BspCNI	CTCAG	3 cut(s)	18, 353, 665
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	234, 325, 381
BspMAI	CTGCAG	3 cut(s)	82, 305, 429
BspTNI	GGTCTC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	4 cut(s)	260, 569, 599, 686
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	536
BstAPI	GCANNNNNTGC	2 cut(s)	74, 101
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	3 cut(s)	26, 340, 652
BstF5I	GGATG	3 cut(s)	141, 286, 509
BstMAI	GTCTC	1 cut(s)	725
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 101, 350, 373
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	4 cut(s)	78, 301, 425, 724
BstV1I	GCAGC	2 cut(s)	64, 92
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	173, 235, 484, 581
BtsCI	GGATG	3 cut(s)	141, 286, 509
BtsI	GCAGTG	3 cut(s)	90, 348, 434
BtsIMutI	CAGTG	4 cut(s)	23, 90, 348, 434
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	5 cut(s)	233, 380, 579, 596, 754
Csp6I	GTAC	2 cut(s)	40, 803
CviAII	CATG	3 cut(s)	164, 250, 445
CviQI	GTAC	2 cut(s)	40, 803
DdeI	CTNAG	3 cut(s)	26, 340, 652
DraI	TTTAAA	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	3 cut(s)	380, 596, 754
Eco57I	CTGAAG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	167, 253, 448
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	163, 249, 444
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	78, 81
FokI	GGATG	3 cut(s)	148, 273, 516
Fsp4HI	GCNGC	2 cut(s)	78, 81
FspBI	CTAG	2 cut(s)	272, 521
GluI	GCNGC	2 cut(s)	78, 81
HaeIII	GGCC	4 cut(s)	173, 235, 484, 581
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	3 cut(s)	167, 253, 448
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	2 cut(s)	532, 618
Hpy188III	TCNNGA	4 cut(s)	250, 263, 272, 460
Hpy8I	GTNNAC	2 cut(s)	532, 618
HpyAV	CCTTC	3 cut(s)	385, 474, 495
HpyCH4III	ACNGT	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 101, 350, 373
HpyF3I	CTNAG	3 cut(s)	26, 340, 652
Hsp92II	CATG	3 cut(s)	167, 253, 448
Lsp1109I	GCAGC	2 cut(s)	64, 92
MaeI	CTAG	2 cut(s)	272, 521
MaeIII	GTNAC	3 cut(s)	3, 190, 547
MboII	GAAGA	3 cut(s)	508, 509, 601
MfeI	CAATTG	2 cut(s)	384, 465
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	8 cut(s)	9, 96, 105, 369, 384, 465, 543, 633
MluNI	TGGCCA	1 cut(s)	173
MnlI	CCTC	8 cut(s)	73, 246, 299, 338, 405, 692, 745, 790
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	5 cut(s)	32, 131, 224, 242, 318
MslI	CAYNNNNRTG	2 cut(s)	162, 611
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	553
MunI	CAATTG	2 cut(s)	384, 465
MwoI	GCNNNNNNNGC	4 cut(s)	74, 101, 350, 373
NciI	CCSGG	1 cut(s)	553
NlaIII	CATG	3 cut(s)	167, 253, 448
NlaIV	GGNNCC	3 cut(s)	234, 325, 381
NspI	RCATGY	1 cut(s)	448
PaeI	GCATGC	1 cut(s)	448
PagI	TCATGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	2 cut(s)	79, 82
PsiI	TTATAA	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	234, 325, 381
PspPI	GGNCC	5 cut(s)	233, 380, 579, 596, 754
PstI	CTGCAG	3 cut(s)	82, 305, 429
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	41, 804
RsaNI	GTAC	2 cut(s)	40, 803
RseI	CAYNNNNRTG	2 cut(s)	162, 611
SaqAI	TTAA	5 cut(s)	32, 131, 224, 242, 318
SatI	GCNGC	2 cut(s)	78, 81
Sau96I	GGNCC	5 cut(s)	233, 380, 579, 596, 754
ScaI	AGTACT	1 cut(s)	804
ScrFI	CCNGG	1 cut(s)	553
SetI	ASST	6 cut(s)	65, 180, 325, 493, 526, 598
SfcI	CTRYAG	4 cut(s)	78, 301, 425, 724
SinI	GGWCC	3 cut(s)	380, 596, 754
SmiMI	CAYNNNNRTG	2 cut(s)	162, 611
SphI	GCATGC	1 cut(s)	448
Sse9I	AATT	8 cut(s)	9, 96, 105, 369, 384, 465, 543, 633
SseBI	AGGCCT	1 cut(s)	484
SspI	AATATT	1 cut(s)	648
SspMI	CTAG	2 cut(s)	272, 521
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	149
TasI	AATT	8 cut(s)	9, 96, 105, 369, 384, 465, 543, 633
TatI	WGTACW	2 cut(s)	39, 802
Tru1I	TTAA	5 cut(s)	32, 131, 224, 242, 318
Tru9I	TTAA	5 cut(s)	32, 131, 224, 242, 318
TscAI	CASTG	4 cut(s)	30, 97, 355, 434
TseI	GCWGC	2 cut(s)	77, 80
TspDTI	ATGAA	3 cut(s)	238, 266, 503
TspRI	CASTG	4 cut(s)	30, 97, 355, 434
Van91I	CCANNNNNTGG	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	380, 596, 754
XapI	RAATTY	1 cut(s)	9
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	2 cut(s)	272, 521
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.