Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

12373893 .. 12375328

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGCGACGAACTAGCCCATGATTTCTCTCCCATCATCAAAGTATACAAAGACGGTCGAATCGACCGCCTCCTAGGCACATCCACAGTCCCTGCATCCATTGATCCCCAAACCGGTGTTCAATCCAAAGACGTCGTCATCTCAACCGCACCACCCATCTCTGCAAGGCTTTACATTCCCAAATCCACCGCAACCGAGTCAGCCGAGTCAACCCAGAAGCTCCCTCTTCTCGTTTACTTTCACGGCGGTGGCTTCTGCGTTGAAAGTGCTTTCTCTCCCACTTATCACAACTACCTCAACTCTTTAGTCTCCGAGGCCAATGTTGCAGCTGTTTCTGTTGAATATAGGCTGGCGCCGGAGCATCCACTCCCGGCTGCCTATGAAGATTCGTGGGCCGCACTCAAATGGGTGGAGTCCCATCTCGCCGGAAACGGCCCGGAAGAGTGGCTGAACCGGTATGCAGATTTGAACCGGGTTTTCTTTTCAGGTGATAGTGCTGGGGCTAACATAGCTCACCACATGGGTTTGAGAGTTGGATCTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGTGCATCCCTACTTTTGGGGTGAAGAACCAATAGGGGGAGAAGTAGCTTTGGCCGAGAGTCTTAGAAAGATGGTGCCTGCTTTGTGGCGGTTTGCTTACCCTTTGACTAGTGGATCCGATGACCCGTTTTTTAATCCGGGTAAGGATCCGAAGTTGGGGGAGTTGGGTTGTGAGAAAGTTTTGGTCTGTGTTGCGGAGAAGGATGCGTTGAAAGATAGGGGGTGGTATTACAGTGAGGTCTTGAAGAAGAGTGGATGGAATGGAGTTGTGGAGGTATCAGAAGCGAAGGAGGAGCAGCATGTGTTCCATTTGTCCAATGCTACTTGTGACAATGCTGTGACCATGCTCAAGAAGATCGTTTCTTTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

317

Amino Acids

34.79

Weight (kDa)

5.5

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	58 - 180	1.4e-08	Carboxylesterase family
BD-FAE	PF20434	68 - 182	8.3e-13	BD-FAE
Abhydrolase_3	PF07859	77 - 296	4.4e-54	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB1I	GGYRCC	2 cut(s)	352, 652
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	7 cut(s)	67, 147, 189, 246, 396, 667, 773
AclWI	GGATC	6 cut(s)	98, 544, 687, 700, 719, 732
AcoI	YGGCCR	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	132, 353
AfiI	CCNNNNNNNGG	4 cut(s)	113, 594, 614, 734
AgeI	ACCGGT	2 cut(s)	113, 453
AgsI	TTSAA	6 cut(s)	122, 263, 341, 469, 790, 823
AhlI	ACTAGT	1 cut(s)	686
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	5 cut(s)	220, 329, 512, 562, 626
AluI	AGCT	5 cut(s)	220, 329, 512, 562, 626
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	6 cut(s)	98, 544, 687, 700, 719, 732
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	4 cut(s)	315, 393, 433, 630
ApeKI	GCWGC	3 cut(s)	326, 374, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsiGI	ACCGGT	2 cut(s)	113, 453
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	393, 434
AsuC2I	CCSGG	4 cut(s)	371, 437, 473, 717
AsuHPI	GGTGA	3 cut(s)	500, 506, 611
AvrII	CCTAGG	1 cut(s)	73
BamHI	GGATCC	2 cut(s)	692, 724
BanI	GGYRCC	2 cut(s)	352, 652
BbvI	GCAGC	3 cut(s)	338, 361, 886
BccI	CCATC	5 cut(s)	41, 164, 426, 643, 828
BceAI	ACGGC	2 cut(s)	259, 448
BcnI	CCSGG	4 cut(s)	371, 437, 473, 717
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	14, 74, 687
BfoI	RGCGCY	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	4 cut(s)	327, 375, 396, 875
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	4 cut(s)	328, 376, 397, 876
Bme1390I	CCNGG	4 cut(s)	371, 437, 473, 717
BmgT120I	GGNCC	2 cut(s)	393, 434
BmiI	GGNNCC	4 cut(s)	354, 654, 694, 726
BmrFI	CCNGG	4 cut(s)	371, 437, 473, 717
BmsI	GCATC	4 cut(s)	104, 370, 592, 772
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	4 cut(s)	371, 437, 473, 717
BsaHI	GRCGYC	2 cut(s)	132, 353
BsaJI	CCNNGG	2 cut(s)	73, 312
BsaWI	WCCGGW	2 cut(s)	113, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 594, 614, 734
Bse118I	RCCGGY	2 cut(s)	113, 453
BseDI	CCNNGG	2 cut(s)	73, 312
BseGI	GGATG	6 cut(s)	80, 95, 361, 583, 787, 839
BseLI	CCNNNNNNNGG	4 cut(s)	113, 594, 614, 734
BseMII	CTCAG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	884
BseXI	GCAGC	3 cut(s)	338, 361, 886
BseYI	CCCAGC	1 cut(s)	497
Bsh1285I	CGRYCG	2 cut(s)	58, 67
BshFI	GGCC	4 cut(s)	317, 395, 435, 632
BshNI	GGYRCC	2 cut(s)	352, 652
BshTI	ACCGGT	2 cut(s)	113, 453
BsiEI	CGRYCG	2 cut(s)	58, 67
BsiSI	CCGG	8 cut(s)	114, 356, 371, 426, 437, 454, 472, 716
BslFI	GGGAC	2 cut(s)	74, 400
BslI	CCNNNNNNNGG	4 cut(s)	113, 594, 614, 734
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	74, 400
BsnI	GGCC	4 cut(s)	317, 395, 435, 632
Bsp143I	GATC	5 cut(s)	103, 536, 692, 724, 933
BspACI	CCGC	7 cut(s)	67, 147, 189, 246, 396, 667, 773
BspANI	GGCC	4 cut(s)	317, 395, 435, 632
BspCNI	CTCAG	1 cut(s)	532
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	4 cut(s)	354, 654, 694, 726
BspPI	GGATC	6 cut(s)	98, 544, 687, 700, 719, 732
BspT107I	GGYRCC	2 cut(s)	352, 652
BsrFI	RCCGGY	2 cut(s)	113, 453
BssAI	RCCGGY	2 cut(s)	113, 453
BssECI	CCNNGG	2 cut(s)	73, 312
BssMI	GATC	5 cut(s)	103, 536, 692, 724, 933
BssNAI	GTATAC	1 cut(s)	46
BssNI	GRCGYC	2 cut(s)	132, 353
BssT1I	CCWWGG	1 cut(s)	73
Bst1107I	GTATAC	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	56, 88, 812
Bst6I	CTCTTC	3 cut(s)	231, 435, 821
BstACI	GRCGYC	2 cut(s)	132, 353
BstC8I	GCNNGC	2 cut(s)	351, 657
BstDEI	CTNAG	2 cut(s)	540, 641
BstF5I	GGATG	6 cut(s)	80, 95, 361, 583, 787, 839
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	106, 539, 695, 727, 936
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	5 cut(s)	103, 536, 692, 724, 933
BstMCI	CGRYCG	2 cut(s)	58, 67
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 323, 509
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	4 cut(s)	369, 435, 471, 715
BstV1I	GCAGC	3 cut(s)	338, 361, 886
BstX2I	RGATCY	3 cut(s)	536, 692, 724
BstYI	RGATCY	3 cut(s)	536, 692, 724
BstZ17I	GTATAC	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	317, 395, 435, 632
BtsCI	GGATG	6 cut(s)	80, 95, 361, 583, 787, 839
BtsIMutI	CAGTG	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	351, 657
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	2 cut(s)	113, 453
Cfr13I	GGNCC	2 cut(s)	393, 434
CspAI	ACCGGT	2 cut(s)	113, 453
CviAII	CATG	5 cut(s)	20, 520, 878, 922, 946
DdeI	CTNAG	2 cut(s)	540, 641
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	5 cut(s)	105, 538, 694, 726, 935
DpnII	GATC	5 cut(s)	103, 536, 692, 724, 933
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	3 cut(s)	231, 435, 821
EarI	CTCTTC	3 cut(s)	231, 435, 821
Eco130I	CCWWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	73
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	5 cut(s)	23, 523, 881, 925, 949
FaqI	GGGAC	2 cut(s)	74, 400
FatI	CATG	5 cut(s)	19, 519, 877, 921, 945
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	327, 375, 396, 875
FokI	GGATG	6 cut(s)	67, 82, 348, 570, 794, 846
Fsp4HI	GCNGC	4 cut(s)	327, 375, 396, 875
FspBI	CTAG	3 cut(s)	14, 74, 687
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	327, 375, 396, 875
GsaI	CCCAGC	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	317, 395, 435, 632
HapII	CCGG	8 cut(s)	114, 356, 371, 426, 437, 454, 472, 716
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	2 cut(s)	132, 353
Hin1II	CATG	5 cut(s)	23, 523, 881, 925, 949
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	6 cut(s)	60, 197, 206, 386, 413, 637
HpaII	CCGG	8 cut(s)	114, 356, 371, 426, 437, 454, 472, 716
HphI	GGTGA	3 cut(s)	500, 506, 611
Hpy166II	GTNNAC	3 cut(s)	46, 210, 235
Hpy188I	TCNGA	5 cut(s)	313, 541, 697, 729, 859
Hpy188III	TCNNGA	3 cut(s)	820, 928, 946
Hpy8I	GTNNAC	3 cut(s)	46, 210, 235
Hpy99I	CGWCG	2 cut(s)	11, 137
HpyAV	CCTTC	2 cut(s)	772, 859
HpyCH4III	ACNGT	3 cut(s)	56, 88, 812
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	95, 164, 326, 461, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 323, 509
HpyF3I	CTNAG	2 cut(s)	540, 641
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	2 cut(s)	132, 353
Hsp92II	CATG	5 cut(s)	23, 523, 881, 925, 949
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	103, 536, 692, 724, 933
LmnI	GCTCC	3 cut(s)	225, 358, 871
Lsp1109I	GCAGC	3 cut(s)	338, 361, 886
LweI	GCATC	4 cut(s)	104, 370, 592, 772
MaeI	CTAG	3 cut(s)	14, 74, 687
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	905, 916
MalI	GATC	5 cut(s)	105, 538, 694, 726, 935
MboI	GATC	5 cut(s)	103, 536, 692, 724, 933
MboII	GAAGA	7 cut(s)	218, 395, 452, 614, 835, 838, 943
MflI	RGATCY	3 cut(s)	536, 692, 724
MluCI	AATT	1 cut(s)	949
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	4 cut(s)	206, 215, 422, 646
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	7 cut(s)	80, 234, 305, 307, 808, 844, 862
MseI	TTAA	2 cut(s)	558, 711
MslI	CAYNNNNRTG	2 cut(s)	246, 403
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	8 cut(s)	114, 356, 371, 426, 437, 454, 472, 716
MspR9I	CCNGG	4 cut(s)	371, 437, 473, 717
MwoI	GCNNNNNNNGC	3 cut(s)	75, 323, 509
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	4 cut(s)	371, 437, 473, 717
NdeII	GATC	5 cut(s)	103, 536, 692, 724, 933
NlaIII	CATG	5 cut(s)	23, 523, 881, 925, 949
NlaIV	GGNNCC	4 cut(s)	354, 654, 694, 726
NmeAIII	GCCGAG	2 cut(s)	229, 658
NmuCI	GTSAC	2 cut(s)	905, 916
NspI	RCATGY	1 cut(s)	881
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	60, 386
PflFI	GACNNNGTC	1 cut(s)	134
PinAI	ACCGGT	2 cut(s)	113, 453
PkrI	GCNGC	4 cut(s)	328, 376, 397, 876
PleI	GAGTC	4 cut(s)	205, 214, 421, 645
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	4 cut(s)	205, 214, 421, 645
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	4 cut(s)	354, 654, 694, 726
PspPI	GGNCC	2 cut(s)	393, 434
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	3 cut(s)	536, 692, 724
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	246, 403
SaqAI	TTAA	2 cut(s)	558, 711
SatI	GCNGC	4 cut(s)	327, 375, 396, 875
Sau3AI	GATC	5 cut(s)	103, 536, 692, 724, 933
Sau96I	GGNCC	2 cut(s)	393, 434
SchI	GAGTC	4 cut(s)	206, 215, 422, 646
ScrFI	CCNGG	4 cut(s)	371, 437, 473, 717
SfaNI	GCATC	4 cut(s)	104, 370, 592, 772
SfoI	GGCGCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	246, 403
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	1 cut(s)	949
SsiI	CCGC	7 cut(s)	67, 147, 189, 246, 396, 667, 773
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	3 cut(s)	14, 74, 687
StyD4I	CCNGG	4 cut(s)	369, 435, 471, 715
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	56, 88, 812
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	58, 63
TasI	AATT	1 cut(s)	949
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	60, 386
Tru1I	TTAA	2 cut(s)	558, 711
Tru9I	TTAA	2 cut(s)	558, 711
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	2 cut(s)	905, 916
TseI	GCWGC	3 cut(s)	326, 374, 874
Tsp45I	GTSAC	2 cut(s)	905, 916
TspDTI	ATGAA	2 cut(s)	396, 934
TspRI	CASTG	1 cut(s)	817
Tth111I	GACNNNGTC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	881
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	3 cut(s)	14, 74, 687
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.