Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Reverse (-)

12028160 .. 12031110

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGAGTTTAAGCTATGCAATATCTGTGGCAGCAGAGAAGCGTAAGGTCTATATTGCAATGCTCTTCATACATTGTGTGTATGCAGGTATGGCCTTGTTCTCTAAGGCAGCAATATCTAAAGGAATGAACCCTTTTGTCTTTGTGGTCTATCGCCAAGCTTTCGCCTTCCTAGCCTTGGCTCCATTTGCTTTCTTCTTTGAAAGTTCGAAAGAAGTTCCTCTTTCCTATACCTTACTCATCAAGATTTTCTTTATTTCGCTATTCGGGATTACCCTGAGTTTAAATCTGTACTATGTTGCTATCAACTACACCTCTGCAACCTTTGCTGCAGCCACCACCACTGCAATTCCTGCAATCACTTTTGTTATGGCAGTTTTATTAAGGATGGAAAGCATTTCAATAAAGAAAATGCATGGTTTGGCCAAGGTGTTGGGTTCTGTTAGCAGCCTTTCAGGGGCTTTGGTGTATGCTTTAATCAAGGGGCCTCCATTAAAGTTCATGAACTGGTTTCCAGAAAATCTAGACCACCAAATCCATCCACAGAGTTCCAGCAAAGGGGAGTGGATTAAAGGTTCCCTCATTATGCTCTCAGCCAACACTGCTTGGTCTATGTGGCTAATTTTGCAGGGTCCAATTGTGAAGGAATATCCTGCAAAGTTGAGGCTTACTGCTCTGCAGTGTTTCTTTAGCTGCATGCAGTCTGCTTTCTGGACAATTGCGATTGAGAGAAGGCCTTCAGCTTGGAAGATTGGATGGGACATTCATCTTCTAGCTGTGGTCTACTGTGGTGTAATTGTAACTGGGATTACTTACTGGCTACAAGTTTGGGTCATAGAGAAGAAAGGTTCAGTTTTCACAGCAATGTTCACTCCTTTAGCACTAATTATAACAGCAATATTCTCAGCAATCATGTGGAAAGAAGCAATCTACTGGGGAAGTATTGGTGGAGGTCTATTGCTGGTTGCTGGTCTCTATAGCGTTTTGTGGGGAAAGGAAAAGGAGAACCAGGAAATTAGAGACAATGATCAAAAACAAGAACACAAGGAGGAAGTACTCCTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

39.73

Weight (kDa)

9.37

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 149	2.1e-15	EamA-like transporter family
EamA	PF00892	191 - 329	1.1e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	783
AcoI	YGGCCR	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	293, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	178, 457, 558
AgsI	TTSAA	2 cut(s)	203, 402
AjnI	CCWGG	1 cut(s)	1008
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	5 cut(s)	15, 161, 693, 743, 776
AluI	AGCT	5 cut(s)	15, 161, 693, 743, 776
Alw26I	GTCTC	2 cut(s)	977, 1014
AoxI	GGCC	4 cut(s)	93, 423, 485, 734
ApeKI	GCWGC	6 cut(s)	32, 110, 329, 332, 447, 693
Asp700I	GAANNNNTTC	1 cut(s)	736
AspS9I	GGNCC	2 cut(s)	485, 632
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	425
BbvI	GCAGC	6 cut(s)	44, 122, 316, 344, 459, 680
BccI	CCATC	3 cut(s)	382, 546, 750
BciT130I	CCWGG	1 cut(s)	1010
BclI	TGATCA	1 cut(s)	1027
BcoDI	GTCTC	2 cut(s)	977, 1014
BfaI	CTAG	3 cut(s)	173, 524, 773
BfmI	CTRYAG	3 cut(s)	330, 677, 976
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	6 cut(s)	33, 111, 330, 333, 448, 694
BlsI	GCNGC	6 cut(s)	34, 112, 331, 334, 449, 695
BmcAI	AGTACT	1 cut(s)	1056
Bme1390I	CCNGG	1 cut(s)	1010
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	485, 632
BmiI	GGNNCC	4 cut(s)	183, 486, 577, 633
BmrFI	CCNGG	1 cut(s)	1010
BmrI	ACTGGG	2 cut(s)	813, 943
BmuI	ACTGGG	2 cut(s)	813, 943
Bpu14I	TTCGAA	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	2 cut(s)	177, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 457, 558
Bse1I	ACTGG	4 cut(s)	512, 808, 821, 938
Bse3DI	GCAATG	2 cut(s)	66, 870
BseBI	CCWGG	1 cut(s)	1010
BseDI	CCNNGG	2 cut(s)	177, 426
BseGI	GGATG	3 cut(s)	393, 538, 761
BseLI	CCNNNNNNNGG	3 cut(s)	178, 457, 558
BseMI	GCAATG	2 cut(s)	66, 870
BseMII	CTCAG	3 cut(s)	269, 606, 918
BseNI	ACTGG	4 cut(s)	512, 808, 821, 938
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	6 cut(s)	44, 122, 316, 344, 459, 680
BshFI	GGCC	4 cut(s)	95, 425, 487, 736
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	3 cut(s)	178, 457, 558
BsmAI	GTCTC	2 cut(s)	977, 1014
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	4 cut(s)	95, 425, 487, 736
Bso31I	GGTCTC	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	1027
BspANI	GGCC	4 cut(s)	95, 425, 487, 736
BspCNI	CTCAG	3 cut(s)	270, 605, 917
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	4 cut(s)	183, 486, 577, 633
BspMAI	CTGCAG	2 cut(s)	334, 681
BspMI	ACCTGC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	2 cut(s)	66, 870
BsrI	ACTGG	4 cut(s)	512, 808, 821, 938
BssECI	CCNNGG	2 cut(s)	177, 426
BssMI	GATC	1 cut(s)	1027
BssT1I	CCWWGG	2 cut(s)	177, 426
Bst2UI	CCWGG	1 cut(s)	1010
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	2 cut(s)	326, 353
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	105, 278, 592, 904
BstF5I	GGATG	3 cut(s)	393, 538, 761
BstKTI	GATC	1 cut(s)	1030
BstMAI	GTCTC	2 cut(s)	977, 1014
BstMBI	GATC	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
BstNI	CCWGG	1 cut(s)	1010
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	1008
BstSFI	CTRYAG	3 cut(s)	330, 677, 976
BstV1I	GCAGC	6 cut(s)	44, 122, 316, 344, 459, 680
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	95, 425, 487, 736
BtsCI	GGATG	3 cut(s)	393, 538, 761
BtsI	GCAGTG	3 cut(s)	342, 600, 686
BtsIMutI	CAGTG	3 cut(s)	342, 600, 686
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	485, 632
Csp6I	GTAC	2 cut(s)	292, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	416, 502, 697, 913
CviQI	GTAC	2 cut(s)	292, 1055
DdeI	CTNAG	4 cut(s)	105, 278, 592, 904
DpnI	GATC	1 cut(s)	1029
DpnII	GATC	1 cut(s)	1027
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	177, 426
Eco147I	AGGCCT	1 cut(s)	736
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	1008
EcoT14I	CCWWGG	2 cut(s)	177, 426
EcoT22I	ATGCAT	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	177, 426
FaeI	CATG	4 cut(s)	419, 505, 700, 916
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 236, 268
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	4 cut(s)	415, 501, 696, 912
FbaI	TGATCA	1 cut(s)	1027
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	6 cut(s)	33, 111, 330, 333, 448, 694
FokI	GGATG	3 cut(s)	400, 525, 768
Fsp4HI	GCNGC	6 cut(s)	33, 111, 330, 333, 448, 694
FspBI	CTAG	3 cut(s)	173, 524, 773
GluI	GCNGC	6 cut(s)	33, 111, 330, 333, 448, 694
HaeIII	GGCC	4 cut(s)	95, 425, 487, 736
Hin1II	CATG	4 cut(s)	419, 505, 700, 916
HindIII	AAGCTT	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	784, 870
Hpy188III	TCNNGA	6 cut(s)	244, 268, 502, 515, 524, 712
Hpy8I	GTNNAC	2 cut(s)	784, 870
HpyAV	CCTTC	4 cut(s)	178, 637, 726, 747
HpyCH4III	ACNGT	1 cut(s)	788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
HpyF3I	CTNAG	4 cut(s)	105, 278, 592, 904
Hsp92II	CATG	4 cut(s)	419, 505, 700, 916
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	1 cut(s)	1027
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	6 cut(s)	44, 122, 316, 344, 459, 680
MaeI	CTAG	3 cut(s)	173, 524, 773
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	1 cut(s)	1029
MboI	GATC	1 cut(s)	1027
MboII	GAAGA	6 cut(s)	16, 58, 187, 760, 761, 853
MfeI	CAATTG	2 cut(s)	636, 717
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	7 cut(s)	348, 621, 636, 717, 795, 885, 1014
MluNI	TGGCCA	1 cut(s)	425
MnlI	CCTC	7 cut(s)	231, 325, 498, 590, 657, 944, 1042
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	1010
MunI	CAATTG	2 cut(s)	636, 717
MvaI	CCWGG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	7 cut(s)	92, 173, 188, 326, 353, 602, 625
NdeII	GATC	1 cut(s)	1027
NlaIII	CATG	4 cut(s)	419, 505, 700, 916
NlaIV	GGNNCC	4 cut(s)	183, 486, 577, 633
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	700
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	736
PkrI	GCNGC	6 cut(s)	34, 112, 331, 334, 449, 695
PsiI	TTATAA	1 cut(s)	890
Psp6I	CCWGG	1 cut(s)	1008
PspGI	CCWGG	1 cut(s)	1008
PspN4I	GGNNCC	4 cut(s)	183, 486, 577, 633
PspPI	GGNCC	2 cut(s)	485, 632
PstI	CTGCAG	2 cut(s)	334, 681
RsaI	GTAC	2 cut(s)	293, 1056
RsaNI	GTAC	2 cut(s)	292, 1055
RseI	CAYNNNNRTG	1 cut(s)	863
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
SatI	GCNGC	6 cut(s)	33, 111, 330, 333, 448, 694
Sau3AI	GATC	1 cut(s)	1027
Sau96I	GGNCC	2 cut(s)	485, 632
ScaI	AGTACT	1 cut(s)	1056
ScrFI	CCNGG	1 cut(s)	1010
SfcI	CTRYAG	3 cut(s)	330, 677, 976
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	863
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	7 cut(s)	348, 621, 636, 717, 795, 885, 1014
SseBI	AGGCCT	1 cut(s)	736
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	3 cut(s)	173, 524, 773
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	1 cut(s)	1008
StyI	CCWWGG	2 cut(s)	177, 426
TaaI	ACNGT	1 cut(s)	788
TaqI	TCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	348, 621, 636, 717, 795, 885, 1014
TatI	WGTACW	2 cut(s)	291, 1054
Tru1I	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
Tru9I	TTAA	6 cut(s)	11, 284, 383, 476, 494, 570
TscAI	CASTG	3 cut(s)	349, 607, 686
TseI	GCWGC	6 cut(s)	32, 110, 329, 332, 447, 693
TspDTI	ATGAA	6 cut(s)	17, 58, 143, 490, 518, 755
TspRI	CASTG	3 cut(s)	349, 607, 686
VpaK11BI	GGWCC	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	3 cut(s)	173, 524, 773
ZrmI	AGTACT	1 cut(s)	1056
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.