AT1G44160

DNAJ chaperone C-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013997
Physical Location & Seq
Forward (+)
16794820 .. 16796450
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44160.1

Sequence Viewer

Length: 1074 bp
ATGGCAACACAAGGGATGGCTCAGCCTTCGGCGAAGAAAAGAAGCTTCCTCCTCCGTGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTTTTGCCTCGTGACAAAACCAAACATCATCATAAGGCTAAACACGACACAAAGGAAACCAAACGTCTTGATGAAGAACATAAACGGAATACACCAAACGCCTTCGAGTTTCGGGAAACGAAAGGGATTGGTAAAAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAACACCAATACCAATTTCGTGGGGAGCAAGAAATCTCTTTCAAGAAGTTGTAGCCAGAACACAGCCACGGCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGAGCAAAAGCAGTAGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGATCGACAACCACGGTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTAAAGTGGCTAAACCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCAACGGATGTACCAAGAAGATCAAGATCAAGAGAGATGTTATTACTAGCTTAGGGGAAAAGTGCGAGGAGGAAGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAAGTAACATTCGAAGGCAAAGGAAACGAAGCAATGAGAAGTGTACCGGCAGATTTGACATTCGTGATTGTCGAGAAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAATGGCGGTGGAAGTCTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTACTTGATGGTGACAATATGAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAAAAGGAATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGACTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAGACTCTTCTTGA

Protein Analysis

357

Amino Acids

40.07

Weight (kDa)

9.64

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 181 - 338 1e-40 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44160
fragaria_vesca FvH4_2g27360
malus_domestica MD00G1029000.v1.1 MD15G1345600.v1.1
prunus_persica Prupe.1G493700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0296201
rosa_laevigata RLG00000011718
rosa_multiflora Rmu_sc0028042.1_g000003 Rmu_sc0035469.1_g000001
rosa_roxburghii Rroxscaffold_7G00171750 Rroxscaffold_7G00178310
rosa_rugosa Rorug06G0259400
rosa_samantha Rh6AG371600 Rh6BG379500 Rh6CG384800 Rh6DG372000
rosa_wichuraiana Rw6G032380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 373, 815, 1013
AfaI GTAC 3 cut(s) 586, 691, 738
AfiI CCNNNNNNNGG 1 cut(s) 811
AflII CTTAAG 1 cut(s) 959
AgsI TTSAA 4 cut(s) 67, 321, 938, 1061
AjnI CCWGG 1 cut(s) 916
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 6 cut(s) 45, 480, 571, 624, 839, 856
AluI AGCT 6 cut(s) 45, 480, 571, 624, 839, 856
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 1 cut(s) 829
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 890, 905
AsuII TTCGAA 1 cut(s) 705
BaeI ACNNNNGTAYC 4 cut(s) 568, 601, 681, 714
BanII GRGCYC 1 cut(s) 858
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 858
BccI CCATC 4 cut(s) 10, 646, 672, 869
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 918
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 829
BfaI CTAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 959
BlpI GCTNAGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 675, 918
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 675, 918
BmsI GCATC 2 cut(s) 545, 839
BplI GAGNNNNNCTC 2 cut(s) 789, 821
Bpu10I CCTNAGC 1 cut(s) 625
Bpu1102I GCTNAGC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 675
BsaBI GATNNNNATC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 345, 465, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 811
Bse118I RCCGGY 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 1 cut(s) 918
BseDI CCNNGG 3 cut(s) 345, 465, 916
BseGI GGATG 5 cut(s) 21, 423, 587, 683, 854
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 4 cut(s) 41, 409, 656, 993
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 2 cut(s) 674, 740
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 1 cut(s) 829
BsmI GAATGC 2 cut(s) 954, 1053
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 858
Bsp143I GATC 5 cut(s) 58, 77, 455, 594, 600
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 3 cut(s) 373, 815, 1013
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 705
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 739
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 3 cut(s) 345, 465, 916
BssMI GATC 5 cut(s) 58, 77, 455, 594, 600
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 2 cut(s) 469, 931
Bst6I CTCTTC 4 cut(s) 68, 561, 642, 968
BstAFI CTTAAG 1 cut(s) 959
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 4 cut(s) 21, 551, 625, 1005
BstDSI CCRYGG 2 cut(s) 345, 465
BstF5I GGATG 5 cut(s) 21, 423, 587, 683, 854
BstKTI GATC 5 cut(s) 61, 80, 458, 597, 603
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 5 cut(s) 58, 77, 455, 594, 600
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 918
BstSCI CCNGG 2 cut(s) 673, 916
BstXI CCANNNNNNTGG 1 cut(s) 298
BtgI CCRYGG 2 cut(s) 345, 465
BtsCI GGATG 5 cut(s) 21, 423, 587, 683, 854
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 1 cut(s) 854
Cfr10I RCCGGY 1 cut(s) 739
Csp6I GTAC 3 cut(s) 585, 690, 737
CviAII CATG 1 cut(s) 776
CviQI GTAC 3 cut(s) 585, 690, 737
DdeI CTNAG 4 cut(s) 21, 551, 625, 1005
DpnI GATC 5 cut(s) 60, 79, 457, 596, 602
DpnII GATC 5 cut(s) 58, 77, 455, 594, 600
DraI TTTAAA 1 cut(s) 787
Eam1104I CTCTTC 4 cut(s) 68, 561, 642, 968
EarI CTCTTC 4 cut(s) 68, 561, 642, 968
Ecl136II GAGCTC 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 858
Eco53kI GAGCTC 1 cut(s) 856
EcoICRI GAGCTC 1 cut(s) 856
EcoRII CCWGG 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 858
FaeI CATG 1 cut(s) 779
FatI CATG 1 cut(s) 775
FauI CCCGC 1 cut(s) 1020
FokI GGATG 5 cut(s) 28, 430, 594, 690, 861
FriOI GRGCYC 1 cut(s) 858
FspBI CTAG 1 cut(s) 621
HapII CCGG 2 cut(s) 674, 740
Hin1II CATG 1 cut(s) 779
HindIII AAGCTT 3 cut(s) 43, 478, 837
HinfI GANTC 5 cut(s) 247, 361, 425, 1045, 1064
HpaII CCGG 2 cut(s) 674, 740
HphI GGTGA 2 cut(s) 890, 905
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 3 cut(s) 366, 492, 1002
Hpy8I GTNNAC 1 cut(s) 737
Hpy99I CGWCG 2 cut(s) 361, 370
HpyAV CCTTC 6 cut(s) 36, 202, 233, 540, 701, 788
HpyCH4III ACNGT 2 cut(s) 469, 931
HpyCH4IV ACGT 2 cut(s) 154, 368
HpyCH4V TGCA 3 cut(s) 485, 558, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 4 cut(s) 21, 551, 625, 1005
HpySE526I ACGT 2 cut(s) 154, 368
Hsp92II CATG 1 cut(s) 779
Kzo9I GATC 5 cut(s) 58, 77, 455, 594, 600
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 2 cut(s) 303, 396
LpnPI CCDG 7 cut(s) 347, 400, 414, 687, 753, 903, 930
LweI GCATC 2 cut(s) 545, 839
MaeI CTAG 1 cut(s) 621
MaeII ACGT 2 cut(s) 154, 368
MaeIII GTNAC 4 cut(s) 101, 697, 878, 925
MalI GATC 5 cut(s) 60, 79, 457, 596, 602
MboI GATC 5 cut(s) 58, 77, 455, 594, 600
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 1 cut(s) 292
MlyI GAGTC 2 cut(s) 256, 1058
MmeI TCCRAC 2 cut(s) 389, 560
MseI TTAA 4 cut(s) 669, 786, 842, 960
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 674, 740
MspR9I CCNGG 2 cut(s) 675, 918
Mva1269I GAATGC 2 cut(s) 954, 1053
MvaI CCWGG 1 cut(s) 918
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 675
NdeII GATC 5 cut(s) 58, 77, 455, 594, 600
NlaIII CATG 1 cut(s) 779
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 2 cut(s) 101, 878
NspV TTCGAA 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 4 cut(s) 353, 362, 365, 762
PctI GAATGC 2 cut(s) 954, 1053
PfeI GAWTC 3 cut(s) 361, 425, 1045
PleI GAGTC 2 cut(s) 255, 1058
PpsI GAGTC 2 cut(s) 255, 1058
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 1 cut(s) 916
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 1 cut(s) 471
RsaI GTAC 3 cut(s) 586, 691, 738
RsaNI GTAC 3 cut(s) 585, 690, 737
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 669, 786, 842, 960
Sau3AI GATC 5 cut(s) 58, 77, 455, 594, 600
SchI GAGTC 2 cut(s) 256, 1058
ScrFI CCNGG 2 cut(s) 675, 918
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 2 cut(s) 545, 839
SfuI TTCGAA 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 85, 959
SmoI CTYRAG 2 cut(s) 85, 959
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 373, 815, 1013
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 2 cut(s) 673, 916
TaaI ACNGT 2 cut(s) 469, 931
TaiI ACGT 2 cut(s) 157, 371
TaqI TCGA 9 cut(s) 195, 356, 458, 503, 564, 705, 765, 807, 834
TasI AATT 1 cut(s) 292
TfiI GAWTC 3 cut(s) 361, 425, 1045
Tru1I TTAA 4 cut(s) 669, 786, 842, 960
Tru9I TTAA 4 cut(s) 669, 786, 842, 960
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 2 cut(s) 101, 878
Tsp45I GTSAC 2 cut(s) 101, 878
TspDTI ATGAA 4 cut(s) 177, 792, 1037, 1044
TspGWI ACGGA 5 cut(s) 44, 190, 437, 554, 594
TspRI CASTG 1 cut(s) 936
Vha464I CTTAAG 1 cut(s) 959
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.