Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Reverse (-)

40650123 .. 40652985

Gene Structure 2863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCATTTCAGGTTCTGAAATTTCCAAGTCACATCATCTCGCGCCGTTTTAGCAGAACTTCAGGCTTCTATTTCCTATCCGAATTCAACTCACATAAGCTCCCTGCAAGATGGGTTGGAGTGCCAATGCATGGTCCCTGTAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAACACCAAAGAAGAAGAAGAGACTGGATGAAGTGTGCCTTGAAAGGTATGAACAATATAGCCGAACCTACGTACAGTCATGGATCTTACAAGGGAAAGTATTGGTGGATGGGAAGGTGGTCAACAAAGCCGGTACTCCAGTCTCTGATAAATCTGTTGTAAAGATTATGGCTGAAGTCCCCAAATATGTATGTAGAGCAGGACACAAGTTAGAAGCTGCGATTGAACAGCTAGGTATCAATGTTTCTGGCAAAGTAGCTCTTGATTCAGGGTTGTCAACTGGTGGATTTACCGACTGTTTACTTCAGTATGGTGCATCATTTGTTTATGGAGTCGATGTAGGATATGGACAGGTAGCGGAAAAAATTCGAACTGATGAACGTGTGAGTGTGATAGAACGGACAAATTTAAGACACCTTCCTGGACTCCCGCAAAAAGTAGATTTGGTGACTTTGGATCTGTCATTCATCTCTATTCTATTGGTCATGCCCGCTGTAGTCAATGTGATGAAAGAAGAGGCAACATTAGTCACCCTGGTTAAACCTCAGTTTGAAGCTCGCAGATCACAAGTAGGGAGTGGTGGCATTGTAAGAGATCCATTAGTTCATCAAGAAGTTCTTGAGAGGATCATCAAAGGTGTGGAGAATTTTGGATTTAACAGCAAAGGATGGATAGAGTCTCCTCTCAAGGGTGCTGAGGGCAATATAGAATTTCTAGTTCACTTTACTCGAACAGCTGAGAAAAGTGCAGAGAACTTAGAATGTACTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

316

Amino Acids

35.06

Weight (kDa)

9.25

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	66 - 110	1.7e-09	S4 domain
FtsJ	PF01728	121 - 301	1.1e-38	FtsJ-like methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	533, 605, 666
AclWI	GGATC	5 cut(s)	180, 266, 639, 764, 809
AcsI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
AcuI	CTGAAG	3 cut(s)	45, 369, 464
AfaI	GTAC	3 cut(s)	249, 310, 940
AfiI	CCNNNNNNNGG	2 cut(s)	131, 863
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	88, 218, 401, 728
AjnI	CCWGG	2 cut(s)	595, 708
AluBI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 731, 911
AluI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 731, 911
Alw26I	GTCTC	3 cut(s)	190, 322, 858
AlwI	GGATC	5 cut(s)	180, 266, 639, 764, 809
AlwNI	CAGNNNCTG	2 cut(s)	16, 320
ApeKI	GCWGC	2 cut(s)	152, 392
ApoI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	634, 697
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BbvCI	CCTCAGC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	139, 379
BccI	CCATC	3 cut(s)	105, 278, 837
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	597, 710
BcoDI	GTCTC	3 cut(s)	190, 322, 858
BfaI	CTAG	2 cut(s)	407, 890
BfmI	CTRYAG	2 cut(s)	139, 669
BisI	GCNGC	2 cut(s)	153, 393
BlsI	GCNGC	2 cut(s)	154, 394
Bme1390I	CCNGG	2 cut(s)	597, 710
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	597, 710
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	815, 845
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	708
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 863
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	204, 314, 460
BseBI	CCWGG	2 cut(s)	597, 710
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	208, 289, 848
BseLI	CCNNNNNNNGG	2 cut(s)	131, 863
BseMII	CTCAG	3 cut(s)	734, 861, 903
BseNI	ACTGG	3 cut(s)	204, 314, 460
BseRI	GAGGAG	1 cut(s)	846
BseXI	GCAGC	2 cut(s)	139, 379
BsgI	GTGCAG	1 cut(s)	942
Bsh1236I	CGCG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	120, 338
BslI	CCNNNNNNNGG	2 cut(s)	131, 863
BsmAI	GTCTC	3 cut(s)	190, 322, 858
BsmFI	GGGAC	2 cut(s)	120, 338
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
BspACI	CCGC	3 cut(s)	533, 605, 666
BspCNI	CTCAG	3 cut(s)	733, 862, 904
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	5 cut(s)	180, 266, 639, 764, 809
BspT104I	TTCGAA	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	204, 314, 460
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Bst2UI	CCWGG	2 cut(s)	597, 710
Bst4CI	ACNGT	2 cut(s)	252, 473
Bst6I	CTCTTC	2 cut(s)	188, 684
BstBAI	YACGTR	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	666, 733
BstDEI	CTNAG	4 cut(s)	720, 870, 912, 931
BstF5I	GGATG	3 cut(s)	208, 289, 848
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	175, 261, 634, 740, 772, 804
BstMAI	GTCTC	3 cut(s)	190, 322, 858
BstMBI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	597, 710
BstSCI	CCNGG	2 cut(s)	595, 708
BstSFI	CTRYAG	2 cut(s)	139, 669
BstSNI	TACGTA	1 cut(s)	247
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	139, 379
BstX2I	RGATCY	3 cut(s)	258, 631, 769
BstYI	RGATCY	3 cut(s)	258, 631, 769
BtsCI	GGATG	3 cut(s)	208, 289, 848
Cac8I	GCNNGC	2 cut(s)	666, 733
CaiI	CAGNNNCTG	2 cut(s)	16, 320
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	248, 309, 939
CviAII	CATG	3 cut(s)	131, 255, 661
CviQI	GTAC	3 cut(s)	248, 309, 939
DdeI	CTNAG	4 cut(s)	720, 870, 912, 931
DpnI	GATC	6 cut(s)	174, 260, 633, 739, 771, 803
DpnII	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Eam1104I	CTCTTC	2 cut(s)	188, 684
EarI	CTCTTC	2 cut(s)	188, 684
Eco105I	TACGTA	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	45, 369, 464
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	595, 708
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	3 cut(s)	134, 258, 664
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 420, 452, 777, 809
FaqI	GGGAC	2 cut(s)	120, 338
FatI	CATG	3 cut(s)	130, 254, 660
FauI	CCCGC	2 cut(s)	612, 673
Fnu4HI	GCNGC	2 cut(s)	153, 393
FokI	GGATG	3 cut(s)	215, 296, 855
Fsp4HI	GCNGC	2 cut(s)	153, 393
FspBI	CTAG	2 cut(s)	407, 890
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	153, 393
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	134, 258, 664
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	2 cut(s)	298, 453
HindII	GTYRAC	2 cut(s)	298, 453
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	4 cut(s)	440, 507, 600, 851
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	634, 697
Hpy166II	GTNNAC	4 cut(s)	298, 453, 476, 895
Hpy188I	TCNGA	3 cut(s)	18, 82, 322
Hpy188III	TCNNGA	3 cut(s)	437, 785, 794
Hpy8I	GTNNAC	4 cut(s)	298, 453, 476, 895
HpyAV	CCTTC	2 cut(s)	283, 602
HpyCH4III	ACNGT	2 cut(s)	252, 473
HpyCH4IV	ACGT	2 cut(s)	246, 556
HpyCH4V	TGCA	5 cut(s)	107, 130, 491, 923, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	720, 870, 912, 931
HpySE526I	ACGT	2 cut(s)	246, 556
Hsp92II	CATG	3 cut(s)	134, 258, 664
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	2 cut(s)	139, 379
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	407, 890
MaeII	ACGT	2 cut(s)	246, 556
MaeIII	GTNAC	3 cut(s)	29, 622, 703
MalI	GATC	6 cut(s)	174, 260, 633, 739, 771, 803
MboI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
MboII	GAAGA	4 cut(s)	199, 202, 205, 701
MflI	RGATCY	3 cut(s)	258, 631, 769
MluCI	AATT	6 cut(s)	20, 83, 540, 580, 820, 884
MlyI	GAGTC	3 cut(s)	516, 594, 860
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	685, 729, 792, 865, 867
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	3 cut(s)	584, 714, 831
MspA1I	CMGCKG	2 cut(s)	668, 911
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	597, 710
MvaI	CCWGG	2 cut(s)	597, 710
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
NlaIII	CATG	3 cut(s)	134, 258, 664
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	3 cut(s)	29, 622, 703
NsiI	ATGCAT	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	154, 394
PleI	GAGTC	3 cut(s)	515, 594, 859
PpsI	GAGTC	3 cut(s)	515, 594, 859
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	595, 708
PspGI	CCWGG	2 cut(s)	595, 708
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	2 cut(s)	16, 320
PsuI	RGATCY	3 cut(s)	258, 631, 769
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	3 cut(s)	249, 310, 940
RsaNI	GTAC	3 cut(s)	248, 309, 939
SaqAI	TTAA	3 cut(s)	584, 714, 831
SatI	GCNGC	2 cut(s)	153, 393
Sau3AI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	3 cut(s)	516, 594, 860
ScrFI	CCNGG	2 cut(s)	597, 710
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	2 cut(s)	139, 669
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	794, 860
SmoI	CTYRAG	2 cut(s)	794, 860
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	6 cut(s)	20, 83, 540, 580, 820, 884
SsiI	CCGC	3 cut(s)	533, 605, 666
SspMI	CTAG	2 cut(s)	407, 890
StyD4I	CCNGG	2 cut(s)	595, 708
TaaI	ACNGT	2 cut(s)	252, 473
TaiI	ACGT	2 cut(s)	249, 559
TaqI	TCGA	3 cut(s)	510, 544, 904
TasI	AATT	6 cut(s)	20, 83, 540, 580, 820, 884
TatI	WGTACW	1 cut(s)	938
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	3 cut(s)	584, 714, 831
Tru9I	TTAA	3 cut(s)	584, 714, 831
TseFI	GTSAC	3 cut(s)	29, 622, 703
TseI	GCWGC	2 cut(s)	152, 392
Tsp45I	GTSAC	3 cut(s)	29, 622, 703
TspDTI	ATGAA	6 cut(s)	219, 240, 567, 631, 698, 770
TspGWI	ACGGA	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	407, 890
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.