Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

40649008 .. 40649976

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGTTCTGTCATGGGATGGAACCCTCTCGTCACGTGACTTCCAGGTTGCAGCACGTGCTTTTGCAGAGAACTGGAAGCAATTCAACCCTGCCTTGCCTCCATGGACGTGGGTTCCTTGTCTTAAACAACCTTCTCGTCTCTCTCAAGAGCAGGGCTACTTGTCATTGGAGAAGATATGCCTTCTTGGATCAAACAAGGAACATGAGCAGGAAGATGTAGATGAAGAAGAGCCTGAGCCTGTTGATAATGCCACGCTTGTTGAGAGCGCTGGTCCTCAGGTGTGTTACTATGATTTCCATATAGTATACAGTGATTCGTATCGGGTTCCTGTGCTGTATTTTCGTGGGTACTACATTGATGGACAACCTTTGGCTTGGGATGAGATTGAAAAGGACTTACCTGCATGCTCATCAAAGGTGTTGCTGGAATCGAAATGGACATTCATTACTCAGGAGGAGCATCCGCACTTGAATAGGCCATGGTACAAGCTGCATCCATGTGGGACTAGTGAGTGGGTGAAGCTGCTTTTTCTTGGTGATGAATCTTTGGCTAAAAAAGGAGTAGCAGTTGAGCAATATTTGGTGTCATGGCTCTCAGTTGTTGGTCAAGTAGTTGGTCTTAGAATCCCTTTTGATATGTTGAATCATCATAAAAGTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

222

Amino Acids

25.58

Weight (kDa)

4.92

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	22 - 211	1.4e-46	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	199
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	2 cut(s)	353, 488
AfeI	AGCGCT	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	88, 392, 475, 646
AhlI	ACTAGT	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	493, 526
AluI	AGCT	2 cut(s)	493, 526
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	53, 493, 526
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	532, 551
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	279
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	3 cut(s)	65, 480, 513
BccI	CCATC	2 cut(s)	14, 356
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	3 cut(s)	54, 494, 527
BlsI	GCNGC	3 cut(s)	55, 495, 528
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	25, 117, 330
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	472, 505
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	104, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	104, 482
BseGI	GGATG	4 cut(s)	25, 388, 463, 496
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	228, 293, 467, 612
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	65, 480, 513
BshFI	GGCC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	2 cut(s)	104, 482
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	4 cut(s)	229, 292, 466, 611
BspLI	GGNNCC	3 cut(s)	25, 117, 330
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	104, 482
BssMI	GATC	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	310
BssT1I	CCWWGG	2 cut(s)	104, 482
Bst1107I	GTATAC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	237, 279, 453, 598, 623
BstDSI	CCRYGG	2 cut(s)	104, 482
BstF5I	GGATG	4 cut(s)	25, 388, 463, 496
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	65, 480, 513
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	2 cut(s)	104, 482
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	25, 388, 463, 496
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	352, 487
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	7 cut(s)	15, 105, 206, 408, 483, 501, 591
CviJI	RGCY	9 cut(s)	159, 235, 241, 377, 481, 493, 526, 554, 595
CviKI_1	RGCY	9 cut(s)	159, 235, 241, 377, 481, 493, 526, 554, 595
CviQI	GTAC	2 cut(s)	352, 487
DdeI	CTNAG	5 cut(s)	237, 279, 453, 598, 623
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	104, 482
Eco47I	GGWCC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	271
Eco72I	CACGTG	2 cut(s)	38, 59
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	104, 482
ErhI	CCWWGG	2 cut(s)	104, 482
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	7 cut(s)	18, 108, 209, 411, 486, 504, 594
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	7 cut(s)	14, 104, 205, 407, 482, 500, 590
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	54, 494, 527
FokI	GGATG	4 cut(s)	32, 395, 450, 483
Fsp4HI	GCNGC	3 cut(s)	54, 494, 527
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	54, 494, 527
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	7 cut(s)	18, 108, 209, 411, 486, 504, 594
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	317, 431, 545, 627, 646
HphI	GGTGA	2 cut(s)	532, 551
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	149, 455
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	144, 194
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	3 cut(s)	37, 58, 110
HpyCH4V	TGCA	4 cut(s)	53, 68, 407, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	5 cut(s)	237, 279, 453, 598, 623
HpySE526I	ACGT	3 cut(s)	37, 58, 110
Hsp92II	CATG	7 cut(s)	18, 108, 209, 411, 486, 504, 594
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	65, 480, 513
LweI	GCATC	2 cut(s)	472, 505
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	3 cut(s)	37, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 287
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	4 cut(s)	187, 227, 239, 242
MluCI	AATT	2 cut(s)	83, 664
MnlI	CCTC	4 cut(s)	38, 111, 288, 451
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	109, 501
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 482
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	7 cut(s)	18, 108, 209, 411, 486, 504, 594
NlaIV	GGNNCC	3 cut(s)	25, 117, 330
NmuCI	GTSAC	2 cut(s)	33, 38
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	317, 431, 545, 627, 646
PkrI	GCNGC	3 cut(s)	55, 495, 528
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
Psp6I	CCWGG	1 cut(s)	45
PspCI	CACGTG	2 cut(s)	38, 59
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	25, 117, 330
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	353, 488
RsaNI	GTAC	2 cut(s)	352, 487
RseI	CAYNNNNRTG	2 cut(s)	109, 501
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	54, 494, 527
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	472, 505
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	109, 501
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	509
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	2 cut(s)	83, 664
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	104, 482
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	3 cut(s)	40, 61, 113
TaqI	TCGA	1 cut(s)	434
TasI	AATT	2 cut(s)	83, 664
TfiI	GAWTC	5 cut(s)	317, 431, 545, 627, 646
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	3 cut(s)	53, 493, 526
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	3 cut(s)	240, 436, 558
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.