Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Reverse (-)

12039678 .. 12045342

Gene Structure 5665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCGGCGAAGGTGGGATTCGACGGAGAAGACGCGGTGGCGCTGGTGAACGAGCTCCGAGCGAGCTTCGCGTCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTCGCCACCTATCACGAGGCCGAGATCGTCGACGCTCTCAACTCCGACCTCTCCAAGCCGGAATTCGAGACCCTGATCTACGAGATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGCATGGAATTATCCTTTCTTGTGATACCTGTTTTCCAGTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTCCTTTTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGGATAATTGCAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCATTTCCCCTGATTACATTTTAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCTTGAAAAGTGAATTGGAGAACTTCTATGGGAAGAATCCACTACAATCAAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGATGAGGATAAGGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAAGACTCCCTGATTATGCAGGAGGAGATCTTTGGTCCGTTGCTTCCTATTATCACGGTAGGAACCAATTTGTTGACAAGATAGAAGACAGCTTTGATTTGATAACCTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCACTTCGTAAGGAATATATCTGCAGGAGGTTTGGTTATCAACGACACTACCATTCATCTTGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTATCGAGGTTTTTCTGGAGATGCTTCTGTGAGGTACCCTCCATACACAAAGGGGAAGCTAAGACTTCTAAAGGCTCTGGTCGGTGGTAGTCTATTGGGCATAATCCGCGCTCTATTCGGATGGTCTAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

455

Amino Acids

49.41

Weight (kDa)

8.83

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	109 - 298	3.2e-33	Aldehyde dehydrogenase family
Aldedh	PF00171	343 - 410	1.8e-09	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1266
AccB1I	GGYRCC	1 cut(s)	1266
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	3 cut(s)	35, 71, 1341
AciI	CCGC	5 cut(s)	5, 35, 655, 1028, 1339
AclWI	GGATC	2 cut(s)	326, 1077
AcsI	RAATTY	3 cut(s)	191, 826, 1193
AcuI	CTGAAG	3 cut(s)	278, 1085, 1195
AfaI	GTAC	1 cut(s)	1268
AfiI	CCNNNNNNNGG	3 cut(s)	84, 341, 1154
AgsI	TTSAA	3 cut(s)	226, 760, 1205
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 752, 784
Alw21I	GWGCWC	2 cut(s)	57, 233
Alw26I	GTCTC	2 cut(s)	191, 819
AlwI	GGATC	2 cut(s)	326, 1077
AlwNI	CAGNNNCTG	1 cut(s)	1063
AoxI	GGCC	2 cut(s)	118, 147
ApeKI	GCWGC	4 cut(s)	109, 353, 563, 1034
ApoI	RAATTY	3 cut(s)	191, 826, 1193
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
Asp718I	GGTACC	1 cut(s)	1266
AspLEI	GCGC	2 cut(s)	43, 1343
AspS9I	GGNCC	1 cut(s)	942
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	942
AxyI	CCTNAGG	1 cut(s)	1015
BanI	GGYRCC	1 cut(s)	1266
BanII	GRGCYC	2 cut(s)	57, 233
BauI	CACGAG	2 cut(s)	143, 232
BbsI	GAAGAC	3 cut(s)	36, 66, 999
Bbv12I	GWGCWC	2 cut(s)	57, 233
BbvI	GCAGC	4 cut(s)	121, 365, 550, 1021
BccI	CCATC	4 cut(s)	388, 547, 897, 1347
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	191, 819
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	2 cut(s)	366, 1092
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	6 cut(s)	6, 110, 354, 564, 1028, 1035
BlsI	GCNGC	6 cut(s)	7, 111, 355, 565, 1029, 1036
Bme18I	GGWCC	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	942
BmiI	GGNNCC	3 cut(s)	346, 971, 1268
BmsI	GCATC	3 cut(s)	639, 742, 1243
BpiI	GAAGAC	3 cut(s)	36, 66, 999
BplI	GAGNNNNNCTC	4 cut(s)	866, 898, 1255, 1287
BpmI	CTGGAG	3 cut(s)	515, 594, 1269
BpuEI	CTTGAG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	1186
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 1089, 1119
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 341, 1154
Bse1I	ACTGG	4 cut(s)	317, 335, 498, 611
Bse21I	CCTNAGG	1 cut(s)	1015
Bse3DI	GCAATG	2 cut(s)	348, 407
BseDI	CCNNGG	1 cut(s)	1186
BseGI	GGATG	4 cut(s)	273, 757, 868, 1358
BseLI	CCNNNNNNNGG	3 cut(s)	84, 341, 1154
BseMI	GCAATG	2 cut(s)	348, 407
BseMII	CTCAG	1 cut(s)	1029
BseNI	ACTGG	4 cut(s)	317, 335, 498, 611
BseRI	GAGGAG	3 cut(s)	113, 945, 1170
BseXI	GCAGC	4 cut(s)	121, 365, 550, 1021
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	3 cut(s)	35, 71, 1341
BshFI	GGCC	2 cut(s)	120, 149
BshNI	GGYRCC	1 cut(s)	1266
BsiHKAI	GWGCWC	2 cut(s)	57, 233
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	3 cut(s)	310, 521, 888
BslI	CCNNNNNNNGG	3 cut(s)	84, 341, 1154
BsmAI	GTCTC	2 cut(s)	191, 819
BsmFI	GGGAC	3 cut(s)	310, 521, 888
BsnI	GGCC	2 cut(s)	120, 149
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	57, 233
Bsp143I	GATC	5 cut(s)	153, 204, 331, 934, 1069
Bsp19I	CCATGG	1 cut(s)	1186
BspACI	CCGC	5 cut(s)	5, 35, 655, 1028, 1339
BspANI	GGCC	2 cut(s)	120, 149
BspCNI	CTCAG	1 cut(s)	1028
BspFNI	CGCG	3 cut(s)	35, 71, 1341
BspLI	GGNNCC	3 cut(s)	346, 971, 1268
BspMAI	CTGCAG	1 cut(s)	1096
BspPI	GGATC	2 cut(s)	326, 1077
BspQI	GCTCTTC	2 cut(s)	221, 451
BspT107I	GGYRCC	1 cut(s)	1266
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	348, 407
BsrI	ACTGG	4 cut(s)	317, 335, 498, 611
BssECI	CCNNGG	1 cut(s)	1186
BssMI	GATC	5 cut(s)	153, 204, 331, 934, 1069
BssSI	CACGAG	2 cut(s)	143, 232
BssT1I	CCWWGG	1 cut(s)	1186
Bst2BI	CACGAG	2 cut(s)	143, 232
Bst4CI	ACNGT	1 cut(s)	965
Bst6I	CTCTTC	3 cut(s)	221, 451, 529
BstC8I	GCNNGC	6 cut(s)	64, 132, 414, 697, 844, 1032
BstDEI	CTNAG	3 cut(s)	1015, 1292, 1359
BstDSI	CCRYGG	1 cut(s)	1186
BstF5I	GGATG	4 cut(s)	273, 757, 868, 1358
BstFNI	CGCG	3 cut(s)	35, 71, 1341
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 1343
BstKTI	GATC	5 cut(s)	156, 207, 334, 937, 1072
BstMAI	GTCTC	2 cut(s)	191, 819
BstMBI	GATC	5 cut(s)	153, 204, 331, 934, 1069
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 280, 353, 362, 563, 1338
BstNSI	RCATGY	1 cut(s)	223
BstSFI	CTRYAG	2 cut(s)	366, 1092
BstUI	CGCG	3 cut(s)	35, 71, 1341
BstV1I	GCAGC	4 cut(s)	121, 365, 550, 1021
BstV2I	GAAGAC	3 cut(s)	36, 66, 999
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
Bsu36I	CCTNAGG	1 cut(s)	1015
BsuRI	GGCC	2 cut(s)	120, 149
BtgI	CCRYGG	1 cut(s)	1186
BtsCI	GGATG	4 cut(s)	273, 757, 868, 1358
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	6 cut(s)	64, 132, 414, 697, 844, 1032
CaiI	CAGNNNCTG	1 cut(s)	1063
CfoI	GCGC	2 cut(s)	43, 1343
Cfr13I	GGNCC	1 cut(s)	942
CseI	GACGC	3 cut(s)	41, 60, 170
Csp6I	GTAC	1 cut(s)	1267
CviAII	CATG	4 cut(s)	220, 264, 284, 1187
CviQI	GTAC	1 cut(s)	1267
DdeI	CTNAG	3 cut(s)	1015, 1292, 1359
DpnI	GATC	5 cut(s)	155, 206, 333, 936, 1071
DpnII	GATC	5 cut(s)	153, 204, 331, 934, 1069
Eam1104I	CTCTTC	3 cut(s)	221, 451, 529
EarI	CTCTTC	3 cut(s)	221, 451, 529
EciI	GGCGGA	1 cut(s)	670
Ecl136II	GAGCTC	2 cut(s)	55, 231
Eco130I	CCWWGG	1 cut(s)	1186
Eco24I	GRGCYC	2 cut(s)	57, 233
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	942
Eco53kI	GAGCTC	2 cut(s)	55, 231
Eco57I	CTGAAG	3 cut(s)	278, 1085, 1195
Eco81I	CCTNAGG	1 cut(s)	1015
EcoICRI	GAGCTC	2 cut(s)	55, 231
EcoRI	GAATTC	2 cut(s)	191, 826
EcoT14I	CCWWGG	1 cut(s)	1186
EcoT38I	GRGCYC	2 cut(s)	57, 233
ErhI	CCWWGG	1 cut(s)	1186
FaeI	CATG	4 cut(s)	223, 267, 287, 1190
FalI	AAGNNNNNCTT	2 cut(s)	1058, 1090
FaqI	GGGAC	3 cut(s)	310, 521, 888
FatI	CATG	4 cut(s)	219, 263, 283, 1186
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	6, 110, 354, 564, 1028, 1035
FokI	GGATG	3 cut(s)	280, 764, 875
FriOI	GRGCYC	2 cut(s)	57, 233
Fsp4HI	GCNGC	6 cut(s)	6, 110, 354, 564, 1028, 1035
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	2 cut(s)	42, 1342
GluI	GCNGC	6 cut(s)	6, 110, 354, 564, 1028, 1035
GsuI	CTGGAG	3 cut(s)	515, 594, 1269
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	120, 149
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	3 cut(s)	41, 60, 170
HhaI	GCGC	2 cut(s)	43, 1343
Hin1II	CATG	4 cut(s)	223, 267, 287, 1190
Hin6I	GCGC	2 cut(s)	41, 1341
HinP1I	GCGC	2 cut(s)	41, 1341
HincII	GTYRAC	2 cut(s)	160, 982
HindII	GTYRAC	2 cut(s)	160, 982
HinfI	GANTC	5 cut(s)	18, 82, 623, 790, 912
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	4 cut(s)	49, 160, 982, 1047
Hpy188I	TCNGA	5 cut(s)	59, 87, 175, 385, 1352
Hpy188III	TCNNGA	4 cut(s)	143, 196, 1017, 1248
Hpy8I	GTNNAC	4 cut(s)	49, 160, 982, 1047
Hpy99I	CGWCG	3 cut(s)	26, 161, 164
HpyAV	CCTTC	4 cut(s)	4, 537, 1060, 1219
HpyCH4III	ACNGT	1 cut(s)	965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 280, 353, 362, 563, 1338
HpyF3I	CTNAG	3 cut(s)	1015, 1292, 1359
Hsp92II	CATG	4 cut(s)	223, 267, 287, 1190
HspAI	GCGC	2 cut(s)	41, 1341
KpnI	GGTACC	1 cut(s)	1270
Kzo9I	GATC	5 cut(s)	153, 204, 331, 934, 1069
LguI	GCTCTTC	2 cut(s)	221, 451
LmnI	GCTCC	7 cut(s)	60, 87, 344, 397, 496, 592, 887
Lsp1109I	GCAGC	4 cut(s)	121, 365, 550, 1021
LweI	GCATC	3 cut(s)	639, 742, 1243
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	5 cut(s)	155, 206, 333, 936, 1071
MboI	GATC	5 cut(s)	153, 204, 331, 934, 1069
MboII	GAAGA	7 cut(s)	41, 66, 238, 438, 546, 799, 1004
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	57, 233
MluCI	AATT	9 cut(s)	191, 239, 288, 660, 743, 767, 826, 974, 1193
MlyI	GAGTC	2 cut(s)	76, 906
MmeI	TCCRAC	3 cut(s)	198, 322, 840
MseI	TTAA	2 cut(s)	719, 1366
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	3 cut(s)	35, 71, 1341
MwoI	GCNNNNNNNGC	6 cut(s)	68, 280, 353, 362, 563, 1338
NcoI	CCATGG	1 cut(s)	1186
NdeII	GATC	5 cut(s)	153, 204, 331, 934, 1069
NlaIII	CATG	4 cut(s)	223, 267, 287, 1190
NlaIV	GGNNCC	3 cut(s)	346, 971, 1268
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	1 cut(s)	223
PciSI	GCTCTTC	2 cut(s)	221, 451
PfeI	GAWTC	3 cut(s)	18, 623, 790
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	7, 111, 355, 565, 1029, 1036
PleI	GAGTC	2 cut(s)	76, 906
PpsI	GAGTC	2 cut(s)	76, 906
Psp124BI	GAGCTC	2 cut(s)	57, 233
PspN4I	GGNNCC	3 cut(s)	346, 971, 1268
PspPI	GGNCC	1 cut(s)	942
PstI	CTGCAG	1 cut(s)	1096
PstNI	CAGNNNCTG	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	934
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	1268
RsaNI	GTAC	1 cut(s)	1267
SacI	GAGCTC	2 cut(s)	57, 233
SalI	GTCGAC	1 cut(s)	158
SapI	GCTCTTC	2 cut(s)	221, 451
SaqAI	TTAA	2 cut(s)	719, 1366
SatI	GCNGC	6 cut(s)	6, 110, 354, 564, 1028, 1035
Sau3AI	GATC	5 cut(s)	153, 204, 331, 934, 1069
Sau96I	GGNCC	1 cut(s)	942
SchI	GAGTC	2 cut(s)	76, 906
SduI	GDGCHC	2 cut(s)	57, 233
SfaNI	GCATC	3 cut(s)	639, 742, 1243
SfcI	CTRYAG	2 cut(s)	366, 1092
SgrDI	CGTCGACG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	942
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	9 cut(s)	191, 239, 288, 660, 743, 767, 826, 974, 1193
SsiI	CCGC	5 cut(s)	5, 35, 655, 1028, 1339
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	2 cut(s)	57, 233
StyI	CCWWGG	1 cut(s)	1186
TaaI	ACNGT	1 cut(s)	965
TaqI	TCGA	5 cut(s)	21, 159, 195, 898, 1237
TasI	AATT	9 cut(s)	191, 239, 288, 660, 743, 767, 826, 974, 1193
TauI	GCSGC	2 cut(s)	8, 1030
TfiI	GAWTC	3 cut(s)	18, 623, 790
Tru1I	TTAA	2 cut(s)	719, 1366
Tru9I	TTAA	2 cut(s)	719, 1366
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	4 cut(s)	109, 353, 563, 1034
TspDTI	ATGAA	2 cut(s)	284, 1115
TspGWI	ACGGA	3 cut(s)	39, 546, 934
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	942
XapI	RAATTY	3 cut(s)	191, 826, 1193
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.