MD00G1029100.v1.1

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
4760820 .. 4767160
6341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1029100.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGGTTCGGAGAAGCCCTTCGACGAAGAAGCCGCCTCTGCTGTGGTCAAGGAGCTGAGAGTGACCTTCGCCTCCGGCAAGACTCGGAGCTATCAATGGAGGGTGTCGCAGCTCGAGTGCATCCTCAAGCTCCTCACCGAAAACGAGCTGGAGATCGTCAACGCTCTCCGCTCCGACCTCTCCAAGCCTGAACTCGAATCCAAAGTCTATGAGATAGCTATGTTAAAAAACTCATGTAATTTGGCTATTAAGGAGCTGAGGAAATGGATGAAGCCAGAAAAGGTTAAAACTTCAATAGCAGTTTTTCCTGCATCAGCTGAAATAGTGTCTGAACCTCTTGGTGCTATACTAGTAATTTCAGCATGGAACTATCCTTTCTTACTCTCACTTGATCCAGTTGTTGGAGCCATTGCGGCTGGTAATGTTGTGGTTCTTAAACCATCAGAACTTGCTCCAGCCACATCGTCATTGCTTGCAAAACTTGTAGGTGAATATATGGATAGCTCTTGTATAAGAGTCGTTGAGGGGGCCATTGCTGAAACATCTGCACTATTAGAGCAAAAGTGGGATAAGATATGTTACACAGGAAATGGTAGGGTTGGATGTATAGTGATGGCTAGTGCTGCAAAGCACCTTACACCAGTTCTTTTGGAGCTTGGAGGAAAATCCCCTGTTATCGTTGATTCTGGCATCAACTTACAAGTTGCATGTAGGCGCATAATCGTTGGTAAGTGGGGGTGTAATAATGGACAGGCTTGTGTCTCCCCTGATTATATCGTAACAACAAAAGATTTTGCTCCTAAGCTGGTGGAATCTCTGAAACAAGAATTGGAGAACTTCTATGGAAAGAATCAACTAGAATCAAAAGATTTGTCTCGTATTGTGAATCCTAATCACTTTGCTCGCTTGACAAAGCTCTTGGATGAGGATAAGGTTTCTGGAAAGATCGTCCATGGAGGTGAAATGGACAAAACTAACTTGAGGATAGCTCCCACCATCTTGCTCAATGTCCCACAAGACTCTTTGATCATGACTGAGGAAATATTTGGCCCTTTGCTTCCCATTCTCACGGTCGACAAATTGGAAGACAGTTTTGATTTGATAAACTCAGGAGCAAAGCCCCTTGCTGCGTATTTGTTTACCAACAAGAAGAAGCTGAAGGAGCACTTTGTAAATACTGTATCTGCCGGGGGTTTGGTTATCAATGACACGACCGTACATCTTGCTGTACCCTCCGTGCCTTTTGGAGGAGTTGGAGAGAGTGGAATGGGTGCATACCATGGAAAATTCTCTTTCGACGCCTTTAGCCATAAGAAGGCTGTTGTTTATCGCGGTTTTGTTGGGGATGCCTCCATAAGGTACCCACCATACACAAAGGGGAAGCTAAGAATTCTGAAGGCTCTAATGGGCGGTGGCATATTAAGCATAATCCGTGCTCTGTTCGGATGGCCTGAGGCTTAA

Protein Analysis

487

Amino Acids

52.85

Weight (kDa)

8.43

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 8 - 441 1.1e-82 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1359
AccB1I GGYRCC 1 cut(s) 1359
AccB7I CCANNNNNTGG 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 1074
AccII CGCG 1 cut(s) 1332
AciI CCGC 5 cut(s) 33, 169, 413, 1332, 1410
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 2 cut(s) 1286, 1389
AcuI CTGAAG 2 cut(s) 1178, 1415
AcyI GRCGYC 1 cut(s) 1299
AfaI GTAC 3 cut(s) 1218, 1230, 1361
AfiI CCNNNNNNNGG 4 cut(s) 401, 1247, 1315, 1356
AgsI TTSAA 1 cut(s) 294
AhlI ACTAGT 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
Alw21I GWGCWC 2 cut(s) 1167, 1438
Alw26I GTCTC 2 cut(s) 766, 879
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 3 cut(s) 528, 1048, 1448
ApeKI GCWGC 3 cut(s) 109, 623, 1127
ApoI RAATTY 2 cut(s) 1286, 1389
ArsI GACNNNNNNTTYG 4 cut(s) 189, 221, 857, 889
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 1359
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 2 cut(s) 528, 1049
AsuC2I CCSGG 1 cut(s) 1189
AsuHPI GGTGA 3 cut(s) 127, 500, 971
AvaI CYCGRG 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 1452
BanI GGYRCC 1 cut(s) 1359
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 2 cut(s) 1167, 1438
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 121, 610, 1114
BccI CCATC 4 cut(s) 448, 607, 1004, 1440
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 1 cut(s) 1189
BcoDI GTCTC 2 cut(s) 766, 879
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 3 cut(s) 350, 618, 857
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 5 cut(s) 33, 110, 414, 624, 1128
BlsI GCNGC 5 cut(s) 34, 111, 415, 625, 1129
Bme1390I CCNGG 1 cut(s) 1189
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 528, 1049
BmiI GGNNCC 3 cut(s) 406, 529, 1361
BmrFI CCNGG 1 cut(s) 1189
BmsI GCATC 4 cut(s) 129, 320, 699, 1336
BpiI GAAGAC 1 cut(s) 1092
BplI GAGNNNNNCTC 2 cut(s) 973, 1005
BpmI CTGGAG 2 cut(s) 170, 438
Bpu10I CCTNAGC 2 cut(s) 257, 801
BpuEI CTTGAG 2 cut(s) 110, 1000
BpuMI CCSGG 1 cut(s) 1189
BsaHI GRCGYC 1 cut(s) 1299
BsaJI CCNNGG 3 cut(s) 952, 1188, 1279
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 1247, 1315, 1356
Bse1I ACTGG 2 cut(s) 395, 641
Bse21I CCTNAGG 1 cut(s) 1452
Bse3DI GCAATG 3 cut(s) 408, 467, 531
BseDI CCNNGG 3 cut(s) 952, 1188, 1279
BseGI GGATG 6 cut(s) 120, 273, 608, 928, 1351, 1451
BseLI CCNNNNNNNGG 4 cut(s) 401, 1247, 1315, 1356
BseMI GCAATG 3 cut(s) 408, 467, 531
BseMII CTCAG 5 cut(s) 47, 248, 1026, 1122, 1443
BseNI ACTGG 2 cut(s) 395, 641
BseRI GAGGAG 2 cut(s) 122, 1263
BseXI GCAGC 3 cut(s) 121, 610, 1114
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 1332
Bsh1285I CGRYCG 2 cut(s) 1074, 1215
BshFI GGCC 3 cut(s) 530, 1050, 1450
BshNI GGYRCC 1 cut(s) 1359
BsiEI CGRYCG 2 cut(s) 1074, 1215
BsiHKAI GWGCWC 2 cut(s) 1167, 1438
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 75, 1188
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 4 cut(s) 401, 1247, 1315, 1356
BsmAI GTCTC 2 cut(s) 766, 879
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 3 cut(s) 530, 1050, 1450
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 1167, 1438
Bsp143I GATC 4 cut(s) 153, 391, 945, 1026
Bsp19I CCATGG 2 cut(s) 952, 1279
BspACI CCGC 5 cut(s) 33, 169, 413, 1332, 1410
BspANI GGCC 3 cut(s) 530, 1050, 1450
BspCNI CTCAG 5 cut(s) 48, 249, 1027, 1121, 1444
BspFNI CGCG 1 cut(s) 1332
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 3 cut(s) 406, 529, 1361
BspPI GGATC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 1359
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 3 cut(s) 408, 467, 531
BsrI ACTGG 2 cut(s) 395, 641
BssECI CCNNGG 3 cut(s) 952, 1188, 1279
BssMI GATC 4 cut(s) 153, 391, 945, 1026
BssNI GRCGYC 1 cut(s) 1299
BssT1I CCWWGG 2 cut(s) 952, 1279
Bst4CI ACNGT 4 cut(s) 1072, 1091, 1180, 1216
BstACI GRCGYC 1 cut(s) 1299
BstC8I GCNNGC 2 cut(s) 474, 904
BstDEI CTNAG 7 cut(s) 56, 257, 801, 1035, 1108, 1385, 1452
BstDSI CCRYGG 2 cut(s) 952, 1279
BstENI CCTNNNNNAGG 2 cut(s) 1245, 1354
BstF5I GGATG 6 cut(s) 120, 273, 608, 928, 1351, 1451
BstFNI CGCG 1 cut(s) 1332
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 4 cut(s) 156, 394, 948, 1029
BstMAI GTCTC 2 cut(s) 766, 879
BstMBI GATC 4 cut(s) 153, 391, 945, 1026
BstMCI CGRYCG 2 cut(s) 1074, 1215
BstMWI GCNNNNNNNGC 5 cut(s) 38, 413, 623, 1162, 1422
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 1187
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 3 cut(s) 121, 610, 1114
BstV2I GAAGAC 1 cut(s) 1092
Bsu36I CCTNAGG 1 cut(s) 1452
BsuRI GGCC 3 cut(s) 530, 1050, 1450
BtgI CCRYGG 2 cut(s) 952, 1279
BtsCI GGATG 6 cut(s) 120, 273, 608, 928, 1351, 1451
Cac8I GCNNGC 2 cut(s) 474, 904
CciI TCATGA 1 cut(s) 1029
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 2 cut(s) 528, 1049
CseI GACGC 1 cut(s) 1307
Csp6I GTAC 3 cut(s) 1217, 1229, 1360
CviAII CATG 6 cut(s) 234, 363, 708, 953, 1030, 1280
CviQI GTAC 3 cut(s) 1217, 1229, 1360
DdeI CTNAG 7 cut(s) 56, 257, 801, 1035, 1108, 1385, 1452
DpnI GATC 4 cut(s) 155, 393, 947, 1028
DpnII GATC 4 cut(s) 153, 391, 945, 1026
Eco130I CCWWGG 2 cut(s) 952, 1279
Eco57I CTGAAG 2 cut(s) 1178, 1415
Eco81I CCTNAGG 1 cut(s) 1452
Eco88I CYCGRG 1 cut(s) 113
EcoNI CCTNNNNNAGG 2 cut(s) 1245, 1354
EcoRI GAATTC 1 cut(s) 1389
EcoT14I CCWWGG 2 cut(s) 952, 1279
ErhI CCWWGG 2 cut(s) 952, 1279
FaeI CATG 6 cut(s) 237, 366, 711, 956, 1033, 1283
FalI AAGNNNNNCTT 2 cut(s) 1151, 1183
FaqI GGGAC 1 cut(s) 995
FatI CATG 6 cut(s) 233, 362, 707, 952, 1029, 1279
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 5 cut(s) 33, 110, 414, 624, 1128
FokI GGATG 5 cut(s) 107, 280, 615, 935, 1358
Fsp4HI GCNGC 5 cut(s) 33, 110, 414, 624, 1128
FspBI CTAG 3 cut(s) 350, 618, 857
GlaI GCGC 1 cut(s) 716
GluI GCNGC 5 cut(s) 33, 110, 414, 624, 1128
GsuI CTGGAG 2 cut(s) 170, 438
HaeIII GGCC 3 cut(s) 530, 1050, 1450
HapII CCGG 2 cut(s) 75, 1188
HgaI GACGC 1 cut(s) 1307
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 1299
Hin1II CATG 6 cut(s) 237, 366, 711, 956, 1033, 1283
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 2 cut(s) 160, 1075
HindII GTYRAC 2 cut(s) 160, 1075
HinfI GANTC 9 cut(s) 82, 197, 516, 683, 812, 850, 860, 886, 1019
HpaII CCGG 2 cut(s) 75, 1188
HphI GGTGA 3 cut(s) 127, 500, 971
Hpy166II GTNNAC 3 cut(s) 160, 1075, 1140
Hpy188I TCNGA 8 cut(s) 10, 87, 175, 331, 445, 819, 1395, 1445
Hpy188III TCNNGA 3 cut(s) 939, 1030, 1110
Hpy8I GTNNAC 3 cut(s) 160, 1075, 1140
Hpy99I CGWCG 2 cut(s) 26, 1301
HpyAV CCTTC 5 cut(s) 28, 76, 1153, 1309, 1390
HpyCH4III ACNGT 4 cut(s) 1072, 1091, 1180, 1216
HpyCH4V TGCA 7 cut(s) 120, 311, 476, 548, 626, 707, 1274
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 413, 623, 1162, 1422
HpyF3I CTNAG 7 cut(s) 56, 257, 801, 1035, 1108, 1385, 1452
Hsp92I GRCGYC 1 cut(s) 1299
Hsp92II CATG 6 cut(s) 237, 366, 711, 956, 1033, 1283
HspAI GCGC 1 cut(s) 715
KpnI GGTACC 1 cut(s) 1363
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 4 cut(s) 153, 391, 945, 1026
Lsp1109I GCAGC 3 cut(s) 121, 610, 1114
LweI GCATC 4 cut(s) 129, 320, 699, 1336
MaeI CTAG 3 cut(s) 350, 618, 857
MaeIII GTNAC 3 cut(s) 61, 578, 778
MalI GATC 4 cut(s) 155, 393, 947, 1028
MbiI CCGCTC 1 cut(s) 171
MboI GATC 4 cut(s) 153, 391, 945, 1026
MboII GAAGA 3 cut(s) 38, 1097, 1162
MhlI GDGCHC 2 cut(s) 1167, 1438
MluCI AATT 6 cut(s) 238, 354, 827, 1079, 1286, 1389
MlyI GAGTC 3 cut(s) 76, 525, 1013
MmeI TCCRAC 4 cut(s) 198, 382, 580, 1234
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 224, 249, 285, 435, 1421, 1459
MslI CAYNNNNRTG 1 cut(s) 957
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 75, 1188
MspR9I CCNGG 1 cut(s) 1189
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 5 cut(s) 38, 413, 623, 1162, 1422
NciI CCSGG 1 cut(s) 1189
NcoI CCATGG 2 cut(s) 952, 1279
NdeII GATC 4 cut(s) 153, 391, 945, 1026
NlaIII CATG 6 cut(s) 237, 366, 711, 956, 1033, 1283
NlaIV GGNNCC 3 cut(s) 406, 529, 1361
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 711
PaeR7I CTCGAG 1 cut(s) 113
PagI TCATGA 1 cut(s) 1029
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 6 cut(s) 197, 683, 812, 850, 860, 886
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 5 cut(s) 34, 111, 415, 625, 1129
PleI GAGTC 3 cut(s) 76, 524, 1013
PpsI GAGTC 3 cut(s) 76, 524, 1013
PspN4I GGNNCC 3 cut(s) 406, 529, 1361
PspPI GGNCC 2 cut(s) 528, 1049
PspXI VCTCGAGB 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 3 cut(s) 1218, 1230, 1361
RsaNI GTAC 3 cut(s) 1217, 1229, 1360
RseI CAYNNNNRTG 1 cut(s) 957
SalI GTCGAC 1 cut(s) 1073
SaqAI TTAA 6 cut(s) 224, 249, 285, 435, 1421, 1459
SatI GCNGC 5 cut(s) 33, 110, 414, 624, 1128
Sau3AI GATC 4 cut(s) 153, 391, 945, 1026
Sau96I GGNCC 2 cut(s) 528, 1049
SchI GAGTC 3 cut(s) 76, 525, 1013
ScrFI CCNGG 1 cut(s) 1189
SduI GDGCHC 2 cut(s) 1167, 1438
SfaNI GCATC 4 cut(s) 129, 320, 699, 1336
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 3 cut(s) 113, 125, 979
SmoI CTYRAG 3 cut(s) 113, 125, 979
SpeI ACTAGT 1 cut(s) 349
Sse9I AATT 6 cut(s) 238, 354, 827, 1079, 1286, 1389
SsiI CCGC 5 cut(s) 33, 169, 413, 1332, 1410
SspI AATATT 1 cut(s) 1044
SspMI CTAG 3 cut(s) 350, 618, 857
StyD4I CCNGG 1 cut(s) 1187
StyI CCWWGG 2 cut(s) 952, 1279
TaaI ACNGT 4 cut(s) 1072, 1091, 1180, 1216
TaqI TCGA 5 cut(s) 21, 114, 195, 1074, 1296
TasI AATT 6 cut(s) 238, 354, 827, 1079, 1286, 1389
TauI GCSGC 2 cut(s) 35, 416
TfiI GAWTC 6 cut(s) 197, 683, 812, 850, 860, 886
Tru1I TTAA 6 cut(s) 224, 249, 285, 435, 1421, 1459
Tru9I TTAA 6 cut(s) 224, 249, 285, 435, 1421, 1459
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 109, 623, 1127
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 2 cut(s) 1225, 1421
Van91I CCANNNNNTGG 1 cut(s) 401
XagI CCTNNNNNAGG 2 cut(s) 1245, 1354
XapI RAATTY 2 cut(s) 1286, 1389
XceI RCATGY 1 cut(s) 711
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 1074
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 3 cut(s) 350, 618, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.