Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

44172898 .. 44174127

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG268300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGTAAAGAGCTCGTGTAAATTGGCAATCAAACAACTCAAGTCATGGATGAAGCCAAAGAAGGCTAAACCTTCAATGACCACTTTCCCTTCGTCAGCTAAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAGTAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTCGTTGGAGCCATTGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGAAAGTATATGGATAGTTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCCCTATTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGCAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTTCTTTTGGAGCTTGGAGGCAAATCTCCTGTTGTTGTTGATTCTGGCATTAACTTACAAGTCGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGGTGTAATAATGGACAGGCTTGTATTTCCCCTGATTACATTATAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCATGAAAAGTGAATTGGATGGCTTTTATGGGAAGAATCCGCTACAGTCAAAAGATCTGTCTCGTATAGTGAATTATAATCACTATGCTCGCTTGACAAATCTGTTGGATGAGGATAAGGTTTCTGGGAAGGTCATCCATGGAGGTGAAAGGGACACGAGCAACTTGAGGATAGCTCCCACCGTCTTACTCGATGTCCCACAGGACTCCCTGATGATGCAGGAGGAGATCTTTGGTCCCTTGCTACCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAAACTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCAGTTTGTAAGGAATATCTCTGCAGGAGGTATGGTTATCAATGACACTACCATTCATCTCGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTGTCGAGGTTTTTTTGGAGATGCTTCTCTGAGGTACCCTCCATACACAGAGGGGAAGCAAAGTGTTCTAAAGGCTCTGGTCGGTGGTGATAGTATAGTGGACATAATCCGCTCTCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

409

Amino Acids

44.11

Weight (kDa)

9.12

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	31 - 368	5.8e-77	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 672
Acc65I	GGTACC	1 cut(s)	1140
AccB1I	GGYRCC	1 cut(s)	1140
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	1218
AciI	CCGC	4 cut(s)	496, 635, 902, 1216
AclWI	GGATC	2 cut(s)	167, 951
AcsI	RAATTY	1 cut(s)	1067
AcuI	CTGAAG	2 cut(s)	959, 1069
AfaI	GTAC	2 cut(s)	129, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	182, 1028
AgsI	TTSAA	2 cut(s)	75, 1079
AhlI	ACTAGT	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	7 cut(s)	12, 98, 197, 436, 770, 873, 937
AluI	AGCT	7 cut(s)	12, 98, 197, 436, 770, 873, 937
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	167, 951
AlwNI	CAGNNNCTG	1 cut(s)	937
ApeKI	GCWGC	3 cut(s)	194, 404, 908
ApoI	RAATTY	1 cut(s)	1067
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp718I	GGTACC	1 cut(s)	1140
AspS9I	GGNCC	1 cut(s)	830
AsuHPI	GGTGA	2 cut(s)	752, 1205
AvaII	GGWCC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	1140
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	2 cut(s)	13, 751
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	206, 391, 895
BccI	CCATC	3 cut(s)	229, 388, 608
BcoDI	GTCTC	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	2 cut(s)	131, 399
BfmI	CTRYAG	2 cut(s)	638, 966
BglII	AGATCT	2 cut(s)	649, 822
BisI	GCNGC	4 cut(s)	195, 405, 902, 909
BlsI	GCNGC	4 cut(s)	196, 406, 903, 910
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	3 cut(s)	187, 832, 1142
BmsI	GCATC	3 cut(s)	583, 801, 1117
BpiI	GAAGAC	1 cut(s)	873
BplI	GAGNNNNNCTC	4 cut(s)	754, 786, 1129, 1161
BpuEI	CTTGAG	2 cut(s)	23, 781
BsaJI	CCNNGG	2 cut(s)	733, 1060
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 963, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 1028
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	2 cut(s)	189, 248
BseDI	CCNNGG	2 cut(s)	733, 1060
BseGI	GGATG	5 cut(s)	54, 598, 619, 709, 729
BseLI	CCNNNNNNNGG	2 cut(s)	182, 1028
BseMI	GCAATG	2 cut(s)	189, 248
BseMII	CTCAG	3 cut(s)	102, 903, 1127
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	833, 1044
BseXI	GCAGC	3 cut(s)	206, 391, 895
BshNI	GGYRCC	1 cut(s)	1140
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	5 cut(s)	151, 362, 761, 776, 816
BslI	CCNNNNNNNGG	2 cut(s)	182, 1028
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	5 cut(s)	151, 362, 761, 776, 816
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	172, 649, 822, 943
Bsp19I	CCATGG	2 cut(s)	733, 1060
BspACI	CCGC	4 cut(s)	496, 635, 902, 1216
BspCNI	CTCAG	3 cut(s)	103, 902, 1128
BspLI	GGNNCC	3 cut(s)	187, 832, 1142
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	2 cut(s)	167, 951
BspT107I	GGYRCC	1 cut(s)	1140
BsrBI	CCGCTC	1 cut(s)	1218
BsrDI	GCAATG	2 cut(s)	189, 248
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	733, 1060
BssMI	GATC	4 cut(s)	172, 649, 822, 943
BssSI	CACGAG	2 cut(s)	13, 751
BssT1I	CCWWGG	2 cut(s)	733, 1060
Bst2BI	CACGAG	2 cut(s)	13, 751
Bst4CI	ACNGT	3 cut(s)	642, 778, 853
BstC8I	GCNNGC	3 cut(s)	255, 685, 906
BstDEI	CTNAG	3 cut(s)	111, 889, 1136
BstDSI	CCRYGG	2 cut(s)	733, 1060
BstF5I	GGATG	5 cut(s)	54, 598, 619, 709, 729
BstKTI	GATC	4 cut(s)	175, 652, 825, 946
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	172, 649, 822, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 203, 404
BstSFI	CTRYAG	2 cut(s)	638, 966
BstV1I	GCAGC	3 cut(s)	206, 391, 895
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	649, 822
BstYI	RGATCY	2 cut(s)	649, 822
BtgI	CCRYGG	2 cut(s)	733, 1060
BtsCI	GGATG	5 cut(s)	54, 598, 619, 709, 729
Cac8I	GCNNGC	3 cut(s)	255, 685, 906
CaiI	CAGNNNCTG	1 cut(s)	937
Cfr13I	GGNCC	1 cut(s)	830
Csp6I	GTAC	2 cut(s)	128, 1141
CviAII	CATG	5 cut(s)	45, 144, 598, 734, 1061
CviQI	GTAC	2 cut(s)	128, 1141
DdeI	CTNAG	3 cut(s)	111, 889, 1136
DpnI	GATC	4 cut(s)	174, 651, 824, 945
DpnII	GATC	4 cut(s)	172, 649, 822, 943
EciI	GGCGGA	1 cut(s)	511
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	733, 1060
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	959, 1069
EcoICRI	GAGCTC	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	733, 1060
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	733, 1060
FaeI	CATG	5 cut(s)	48, 147, 601, 737, 1064
FaqI	GGGAC	5 cut(s)	151, 362, 761, 776, 816
FatI	CATG	5 cut(s)	44, 143, 597, 733, 1060
Fnu4HI	GCNGC	4 cut(s)	195, 405, 902, 909
FokI	GGATG	5 cut(s)	61, 605, 626, 716, 716
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	195, 405, 902, 909
FspBI	CTAG	2 cut(s)	131, 399
GluI	GCNGC	4 cut(s)	195, 405, 902, 909
Hin1II	CATG	5 cut(s)	48, 147, 601, 737, 1064
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	464, 631, 800
HphI	GGTGA	2 cut(s)	752, 1205
Hpy166II	GTNNAC	3 cut(s)	856, 921, 1207
Hpy188I	TCNGA	4 cut(s)	112, 226, 1137, 1229
Hpy188III	TCNNGA	1 cut(s)	891
Hpy8I	GTNNAC	3 cut(s)	856, 921, 1207
HpyAV	CCTTC	7 cut(s)	55, 81, 99, 378, 718, 934, 1093
HpyCH4III	ACNGT	3 cut(s)	642, 778, 853
HpyCH4V	TGCA	7 cut(s)	194, 257, 407, 814, 911, 968, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 203, 404
HpyF3I	CTNAG	3 cut(s)	111, 889, 1136
Hsp92II	CATG	5 cut(s)	48, 147, 601, 737, 1064
KpnI	GGTACC	1 cut(s)	1144
Kzo9I	GATC	4 cut(s)	172, 649, 822, 943
LmnI	GCTCC	5 cut(s)	185, 238, 337, 433, 775
Lsp1109I	GCAGC	3 cut(s)	206, 391, 895
LweI	GCATC	3 cut(s)	583, 801, 1117
MaeI	CTAG	2 cut(s)	131, 399
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	4 cut(s)	174, 651, 824, 945
MbiI	CCGCTC	1 cut(s)	1218
MboI	GATC	4 cut(s)	172, 649, 822, 943
MboII	GAAGA	3 cut(s)	279, 640, 878
MflI	RGATCY	2 cut(s)	649, 822
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	8 cut(s)	20, 135, 148, 501, 584, 608, 667, 1067
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	163, 681
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	194, 203, 404
NcoI	CCATGG	2 cut(s)	733, 1060
NdeII	GATC	4 cut(s)	172, 649, 822, 943
NlaIII	CATG	5 cut(s)	48, 147, 601, 737, 1064
NlaIV	GGNNCC	3 cut(s)	187, 832, 1142
PfeI	GAWTC	2 cut(s)	464, 631
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	196, 406, 903, 910
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PsiI	TTATAA	2 cut(s)	560, 672
Psp124BI	GAGCTC	1 cut(s)	14
PspN4I	GGNNCC	3 cut(s)	187, 832, 1142
PspPI	GGNCC	1 cut(s)	830
PstI	CTGCAG	1 cut(s)	970
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	2 cut(s)	649, 822
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	129, 1142
RsaNI	GTAC	2 cut(s)	128, 1141
RseI	CAYNNNNRTG	1 cut(s)	738
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	195, 405, 902, 909
Sau3AI	GATC	4 cut(s)	172, 649, 822, 943
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	3 cut(s)	583, 801, 1117
SfcI	CTRYAG	2 cut(s)	638, 966
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	38, 760
SmoI	CTYRAG	2 cut(s)	38, 760
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	8 cut(s)	20, 135, 148, 501, 584, 608, 667, 1067
SsiI	CCGC	4 cut(s)	496, 635, 902, 1216
SspMI	CTAG	2 cut(s)	131, 399
SstI	GAGCTC	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	733, 1060
TaaI	ACNGT	3 cut(s)	642, 778, 853
TaqI	TCGA	2 cut(s)	786, 1111
TasI	AATT	8 cut(s)	20, 135, 148, 501, 584, 608, 667, 1067
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	2 cut(s)	464, 631
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	3 cut(s)	194, 404, 908
TspDTI	ATGAA	3 cut(s)	65, 614, 989
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	1 cut(s)	1067
XspI	CTAG	2 cut(s)	131, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.