Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

48108076 .. 48109524

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCGGCGAAGGTAGGTTTCGACGGAGAAGCAGCAGCGGCGCTGGCGAAGGAGCTCCGAGCCAGCTTCGCATCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTCACCACCGATCACGAGGCTGAGATTGTCGACGCTCTCAACTCCGACCTCTCCAAGCCTGAATTCGAGTCCCTAATCTACGAGATATGCATGGTAAAGAGCTCGTGTAAATTGGCAATCAAACAACTCAAGTCATGGATGAAGCCAAAGAAGGCTAAACCTTCAATGACCACTTTCCCTTCATCAGCTAAAATAGTGTCTGAGCCTCTTGGTGTTGTACTGGTAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTCGTTGGAGCCATCGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGTAAGTATATGGATAGTTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCCCTATTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGCAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTTCTTTTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCTGGCATTAACTTACAAGTCGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGGTGTAATAATGGACAGGCTTGTATTTCCCCTGATTACATTATAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCATGAAAAGTGAATTGGATAGCTTTTATGGGAAGAATCCGCTACAGTCAAAAGATCTGTCTCGTATAGTGAATTATAATCACTATGCTCGCTTGACAAATCTGTTGGATGAGGATAAGGTTTCTGGGAAGGTCATCCATGGAGGTGAAAGGGACACGAGCAACTTGAGGATAGCTCCCACCATCTTACTCGACGTCCCACAAGACTCCCTGATGATGCAGGAGGAGATCTTTGGTCCCTTGCTGCCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAAACTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAGCCAGAAGCTGAAGGATCAGTTTGTAAGGAATATCTCTGCAGGAGGTATGGTTATCAATGACACTACCATTCATCTCGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTGTCGAGGTTTTTTGGGAGATGCTTCTCTGAGGTACCCTCCATACACGGAGGGGAAGCTAAGTGTTCTAAAGGCTCTGGTCGGTGGTGATAGTATAGTGGACATAATCCGCTCTCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

482

Amino Acids

52.07

Weight (kDa)

8.65

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	14 - 441	3.4e-81	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	779, 891
AatII	GACGTC	1 cut(s)	1011
Acc65I	GGTACC	1 cut(s)	1359
AccB1I	GGYRCC	1 cut(s)	1359
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	1437
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	6 cut(s)	5, 38, 715, 854, 1121, 1435
AclWI	GGATC	2 cut(s)	386, 1170
AcsI	RAATTY	2 cut(s)	191, 1286
AcuI	CTGAAG	2 cut(s)	1178, 1288
AcyI	GRCGYC	1 cut(s)	1008
AfaI	GTAC	2 cut(s)	348, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	84, 401, 1247
AgsI	TTSAA	2 cut(s)	294, 1298
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 812, 844
Alw21I	GWGCWC	2 cut(s)	57, 233
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	2 cut(s)	386, 1170
AlwNI	CAGNNNCTG	1 cut(s)	1156
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	7 cut(s)	32, 35, 109, 413, 623, 1057, 1127
ApoI	RAATTY	2 cut(s)	191, 1286
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
Asp718I	GGTACC	1 cut(s)	1359
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	1049
AsuHPI	GGTGA	3 cut(s)	124, 971, 1424
AvaII	GGWCC	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	1359
BanII	GRGCYC	2 cut(s)	57, 233
BauI	CACGAG	3 cut(s)	143, 232, 970
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	2 cut(s)	57, 233
BbvI	GCAGC	7 cut(s)	44, 47, 121, 425, 610, 1044, 1114
BccI	CCATC	4 cut(s)	416, 448, 607, 1004
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	879
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	2 cut(s)	857, 1185
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	2 cut(s)	868, 1041
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	1 cut(s)	1049
BmiI	GGNNCC	3 cut(s)	406, 1051, 1361
BmsI	GCATC	4 cut(s)	80, 802, 1020, 1336
BpiI	GAAGAC	1 cut(s)	1092
BplI	GAGNNNNNCTC	4 cut(s)	973, 1005, 1348, 1380
BpuEI	CTTGAG	3 cut(s)	110, 242, 1000
BsaHI	GRCGYC	1 cut(s)	1008
BsaJI	CCNNGG	2 cut(s)	952, 1279
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 1182, 1212
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 401, 1247
Bse1I	ACTGG	2 cut(s)	354, 395
Bse3DI	GCAATG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	952, 1279
BseGI	GGATG	4 cut(s)	273, 817, 928, 948
BseLI	CCNNNNNNNGG	3 cut(s)	84, 401, 1247
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	4 cut(s)	141, 321, 1122, 1346
BseNI	ACTGG	2 cut(s)	354, 395
BseRI	GAGGAG	3 cut(s)	113, 1052, 1263
BseXI	GCAGC	7 cut(s)	44, 47, 121, 425, 610, 1044, 1114
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	1359
BsiHKAI	GWGCWC	2 cut(s)	57, 233
BslFI	GGGAC	6 cut(s)	184, 370, 581, 980, 995, 1035
BslI	CCNNNNNNNGG	3 cut(s)	84, 401, 1247
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	6 cut(s)	184, 370, 581, 980, 995, 1035
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	57, 233
Bsp143I	GATC	5 cut(s)	139, 391, 868, 1041, 1162
Bsp19I	CCATGG	2 cut(s)	952, 1279
BspACI	CCGC	6 cut(s)	5, 38, 715, 854, 1121, 1435
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	4 cut(s)	142, 322, 1121, 1347
BspLI	GGNNCC	3 cut(s)	406, 1051, 1361
BspMAI	CTGCAG	1 cut(s)	1189
BspPI	GGATC	2 cut(s)	386, 1170
BspT107I	GGYRCC	1 cut(s)	1359
BsrBI	CCGCTC	1 cut(s)	1437
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	354, 395
BssECI	CCNNGG	2 cut(s)	952, 1279
BssMI	GATC	5 cut(s)	139, 391, 868, 1041, 1162
BssNI	GRCGYC	1 cut(s)	1008
BssSI	CACGAG	3 cut(s)	143, 232, 970
BssT1I	CCWWGG	2 cut(s)	952, 1279
Bst2BI	CACGAG	3 cut(s)	143, 232, 970
Bst4CI	ACNGT	2 cut(s)	861, 1072
BstACI	GRCGYC	1 cut(s)	1008
BstC8I	GCNNGC	5 cut(s)	45, 64, 474, 904, 1125
BstDEI	CTNAG	5 cut(s)	150, 330, 1108, 1355, 1385
BstDSI	CCRYGG	2 cut(s)	952, 1279
BstF5I	GGATG	4 cut(s)	273, 817, 928, 948
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	142, 394, 871, 1044, 1165
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	5 cut(s)	139, 391, 868, 1041, 1162
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 44, 68, 413, 422, 623
BstSFI	CTRYAG	2 cut(s)	857, 1185
BstV1I	GCAGC	7 cut(s)	44, 47, 121, 425, 610, 1044, 1114
BstV2I	GAAGAC	1 cut(s)	1092
BstX2I	RGATCY	2 cut(s)	868, 1041
BstYI	RGATCY	2 cut(s)	868, 1041
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	952, 1279
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	273, 817, 928, 948
Cac8I	GCNNGC	5 cut(s)	45, 64, 474, 904, 1125
CaiI	CAGNNNCTG	1 cut(s)	1156
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	1049
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	347, 1360
CviAII	CATG	6 cut(s)	220, 264, 363, 817, 953, 1280
CviQI	GTAC	2 cut(s)	347, 1360
DdeI	CTNAG	5 cut(s)	150, 330, 1108, 1355, 1385
DpnI	GATC	5 cut(s)	141, 393, 870, 1043, 1164
DpnII	GATC	5 cut(s)	139, 391, 868, 1041, 1162
EciI	GGCGGA	1 cut(s)	730
Ecl136II	GAGCTC	2 cut(s)	55, 231
Eco130I	CCWWGG	2 cut(s)	952, 1279
Eco24I	GRGCYC	2 cut(s)	57, 233
Eco47I	GGWCC	1 cut(s)	1049
Eco53kI	GAGCTC	2 cut(s)	55, 231
Eco57I	CTGAAG	2 cut(s)	1178, 1288
EcoICRI	GAGCTC	2 cut(s)	55, 231
EcoRI	GAATTC	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	952, 1279
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	2 cut(s)	57, 233
ErhI	CCWWGG	2 cut(s)	952, 1279
FaeI	CATG	6 cut(s)	223, 267, 366, 820, 956, 1283
FaqI	GGGAC	6 cut(s)	184, 370, 581, 980, 995, 1035
FatI	CATG	6 cut(s)	219, 263, 362, 816, 952, 1279
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	4 cut(s)	280, 824, 935, 935
FriOI	GRGCYC	2 cut(s)	57, 233
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	1008
Hin1II	CATG	6 cut(s)	223, 267, 366, 820, 956, 1283
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	160, 1075
HindII	GTYRAC	2 cut(s)	160, 1075
HinfI	GANTC	5 cut(s)	82, 197, 683, 850, 1019
HphI	GGTGA	3 cut(s)	124, 971, 1424
Hpy166II	GTNNAC	4 cut(s)	160, 1075, 1140, 1426
Hpy188I	TCNGA	7 cut(s)	59, 87, 175, 331, 445, 1356, 1448
Hpy188III	TCNNGA	2 cut(s)	143, 1110
Hpy8I	GTNNAC	4 cut(s)	160, 1075, 1140, 1426
Hpy99I	CGWCG	3 cut(s)	26, 164, 1010
HpyAV	CCTTC	9 cut(s)	4, 43, 274, 300, 318, 597, 937, 1153, 1312
HpyCH4III	ACNGT	2 cut(s)	861, 1072
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	7 cut(s)	219, 476, 626, 1033, 1130, 1187, 1274
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 44, 68, 413, 422, 623
HpyF3I	CTNAG	5 cut(s)	150, 330, 1108, 1355, 1385
HpySE526I	ACGT	1 cut(s)	1008
Hsp92I	GRCGYC	1 cut(s)	1008
Hsp92II	CATG	6 cut(s)	223, 267, 366, 820, 956, 1283
HspAI	GCGC	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	1363
Kzo9I	GATC	5 cut(s)	139, 391, 868, 1041, 1162
LmnI	GCTCC	8 cut(s)	52, 60, 87, 404, 457, 556, 652, 994
Lsp1109I	GCAGC	7 cut(s)	44, 47, 121, 425, 610, 1044, 1114
LweI	GCATC	4 cut(s)	80, 802, 1020, 1336
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	1008
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	5 cut(s)	141, 393, 870, 1043, 1164
MbiI	CCGCTC	1 cut(s)	1437
MboI	GATC	5 cut(s)	139, 391, 868, 1041, 1162
MboII	GAAGA	4 cut(s)	66, 498, 859, 1097
MflI	RGATCY	2 cut(s)	868, 1041
MhlI	GDGCHC	2 cut(s)	57, 233
MluCI	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1286
MlyI	GAGTC	3 cut(s)	76, 206, 1013
MmeI	TCCRAC	3 cut(s)	198, 382, 900
Mph1103I	ATGCAT	1 cut(s)	221
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	957
MspA1I	CMGCKG	2 cut(s)	38, 416
MwoI	GCNNNNNNNGC	6 cut(s)	38, 44, 68, 413, 422, 623
NcoI	CCATGG	2 cut(s)	952, 1279
NdeII	GATC	5 cut(s)	139, 391, 868, 1041, 1162
NlaIII	CATG	6 cut(s)	223, 267, 366, 820, 956, 1283
NlaIV	GGNNCC	3 cut(s)	406, 1051, 1361
NsiI	ATGCAT	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	683, 850
PflMI	CCANNNNNTGG	1 cut(s)	401
PleI	GAGTC	3 cut(s)	76, 205, 1013
PpsI	GAGTC	3 cut(s)	76, 205, 1013
PsiI	TTATAA	2 cut(s)	779, 891
Psp124BI	GAGCTC	2 cut(s)	57, 233
PspN4I	GGNNCC	3 cut(s)	406, 1051, 1361
PspPI	GGNCC	1 cut(s)	1049
PstI	CTGCAG	1 cut(s)	1189
PstNI	CAGNNNCTG	1 cut(s)	1156
PsuI	RGATCY	2 cut(s)	868, 1041
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	348, 1361
RsaNI	GTAC	2 cut(s)	347, 1360
RseI	CAYNNNNRTG	1 cut(s)	957
SacI	GAGCTC	2 cut(s)	57, 233
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	693
Sau3AI	GATC	5 cut(s)	139, 391, 868, 1041, 1162
Sau96I	GGNCC	1 cut(s)	1049
SchI	GAGTC	3 cut(s)	76, 206, 1013
SduI	GDGCHC	2 cut(s)	57, 233
SfaNI	GCATC	4 cut(s)	80, 802, 1020, 1336
SfcI	CTRYAG	2 cut(s)	857, 1185
SinI	GGWCC	1 cut(s)	1049
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	3 cut(s)	125, 257, 979
SmoI	CTYRAG	3 cut(s)	125, 257, 979
Sse9I	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1286
SsiI	CCGC	6 cut(s)	5, 38, 715, 854, 1121, 1435
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	2 cut(s)	57, 233
StyI	CCWWGG	2 cut(s)	952, 1279
TaaI	ACNGT	2 cut(s)	861, 1072
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	5 cut(s)	21, 159, 195, 1005, 1330
TasI	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1286
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	3 cut(s)	8, 41, 1123
TfiI	GAWTC	2 cut(s)	683, 850
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TseI	GCWGC	7 cut(s)	32, 35, 109, 413, 623, 1057, 1127
TspDTI	ATGAA	4 cut(s)	284, 300, 833, 1208
TspGWI	ACGGA	2 cut(s)	39, 1388
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	191, 1286
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	1 cut(s)	1009
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.