Rroxscaffold_5G00367670

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
49505285 .. 49506736
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367670.1

Sequence Viewer

Length: 1452 bp
ATGGCGGCGAAGGTAGGTTTCGACGGAGAAGCAGCAGCGGCGCTGGCGAAGGACCTCCGAGCCAGCTTCGCATCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTCACCACCGATCACGAGGCCGAGATCGTCGACGCTCTCAACTCCGACCTCTCCAAGCCTGAATTCGAGTCCCTAATCTACGAGATATGCATGGTAAAGAGCTCGTGTAAATTGGCAATCAAACAACTCAAGTCATGGATGAAGCCAAAGAAGGCTAAACCTTCAATGACCACTTTCCCTTCGTCAGCTAAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAGTAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTCGTTGGAGCCATTGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGAAAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTATTGCTGAAACATCTGCACTATTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGCAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTTCTTTTGGAGCTTGGAGGAAAATCCCCTGTTGTTGTTGATTCTGGCATTAACTTACAAGTCGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGGTGTAATAATGGACAGGCTTGTATTTCCCCTGATTACATTATAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCTATGAAAAGTGAACTGGATAGCTTTTTTGGGAAGAATCCGCTACAATCAAAAGATCTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGATGAGGATAAGGTTACTGGGAAGGTCATCCATGGAGGTGAAAGGGACATGAGCAACTTGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAGGACTCCCTGATGATGCAGGAGGAGATCTTTGGTCCCTTGCTACCTATTATCACGGTTGACAAGATAGAAGACAGTTTTGATTTGATAAGCTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCAGTTTGTAAGGTATATCTCTGCAGGAGGTATGGTTATCAATGACACTACCATTCATCTGGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTGTCGAGGTTTTTTTGGAGATGCTTCTCTGAGGTACCCTCCATACACAGAGGGGAAGCTAAGTGTTCTAAAGGCTCTGGTCGGTGGTGATAGTGGACATAATCCGCTCTCTGTTCTGATGGTGTGA

Protein Analysis

483

Amino Acids

52.11

Weight (kDa)

8.77

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 441 3.2e-79 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
Acc65I GGTACC 1 cut(s) 1359
AccB1I GGYRCC 1 cut(s) 1359
AccB7I CCANNNNNTGG 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 1432
AccI GTMKAC 1 cut(s) 159
AciI CCGC 6 cut(s) 5, 38, 715, 854, 1121, 1430
AclWI GGATC 2 cut(s) 386, 1170
AcsI RAATTY 3 cut(s) 191, 886, 1286
AcuI CTGAAG 2 cut(s) 1178, 1288
AfaI GTAC 2 cut(s) 348, 1361
AfiI CCNNNNNNNGG 3 cut(s) 84, 401, 1247
AgsI TTSAA 2 cut(s) 294, 1298
AhlI ACTAGT 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 879
AlwI GGATC 2 cut(s) 386, 1170
AlwNI CAGNNNCTG 1 cut(s) 1156
AoxI GGCC 2 cut(s) 118, 147
ApeKI GCWGC 6 cut(s) 32, 35, 109, 413, 623, 1127
ApoI RAATTY 3 cut(s) 191, 886, 1286
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
Asp718I GGTACC 1 cut(s) 1359
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 52, 1049
AsuHPI GGTGA 3 cut(s) 124, 971, 1424
AvaII GGWCC 2 cut(s) 52, 1049
BanI GGYRCC 1 cut(s) 1359
BanII GRGCYC 1 cut(s) 233
BauI CACGAG 2 cut(s) 143, 232
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 6 cut(s) 44, 47, 121, 425, 610, 1114
BccI CCATC 4 cut(s) 448, 607, 1004, 1438
BceAI ACGGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 879
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 2 cut(s) 350, 618
BfmI CTRYAG 1 cut(s) 1185
BfoI RGCGCY 1 cut(s) 44
BglII AGATCT 2 cut(s) 868, 1041
BisI GCNGC 9 cut(s) 6, 33, 36, 39, 110, 414, 624, 1121, 1128
BlsI GCNGC 9 cut(s) 7, 34, 37, 40, 111, 415, 625, 1122, 1129
Bme18I GGWCC 2 cut(s) 52, 1049
BmgT120I GGNCC 2 cut(s) 52, 1049
BmiI GGNNCC 3 cut(s) 406, 1051, 1361
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 4 cut(s) 80, 802, 1020, 1336
BmuI ACTGGG 1 cut(s) 948
BpiI GAAGAC 1 cut(s) 1092
BplI GAGNNNNNCTC 4 cut(s) 973, 1005, 1348, 1380
Bpu10I CCTNAGC 1 cut(s) 1108
BpuEI CTTGAG 3 cut(s) 110, 242, 1000
BsaJI CCNNGG 2 cut(s) 952, 1279
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 1182, 1212
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 401, 1247
Bse1I ACTGG 3 cut(s) 395, 834, 943
Bse3DI GCAATG 2 cut(s) 408, 467
BseDI CCNNGG 2 cut(s) 952, 1279
BseGI GGATG 4 cut(s) 273, 817, 928, 948
BseLI CCNNNNNNNGG 3 cut(s) 84, 401, 1247
BseMI GCAATG 2 cut(s) 408, 467
BseMII CTCAG 3 cut(s) 321, 1122, 1346
BseNI ACTGG 3 cut(s) 395, 834, 943
BseRI GAGGAG 3 cut(s) 113, 1052, 1263
BseXI GCAGC 6 cut(s) 44, 47, 121, 425, 610, 1114
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 2 cut(s) 120, 149
BshNI GGYRCC 1 cut(s) 1359
BsiHKAI GWGCWC 1 cut(s) 233
BslFI GGGAC 6 cut(s) 184, 370, 581, 980, 995, 1035
BslI CCNNNNNNNGG 3 cut(s) 84, 401, 1247
BsmAI GTCTC 1 cut(s) 879
BsmFI GGGAC 6 cut(s) 184, 370, 581, 980, 995, 1035
BsnI GGCC 2 cut(s) 120, 149
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
Bsp19I CCATGG 2 cut(s) 952, 1279
BspACI CCGC 6 cut(s) 5, 38, 715, 854, 1121, 1430
BspANI GGCC 2 cut(s) 120, 149
BspCNI CTCAG 3 cut(s) 322, 1121, 1347
BspLI GGNNCC 3 cut(s) 406, 1051, 1361
BspMAI CTGCAG 1 cut(s) 1189
BspPI GGATC 2 cut(s) 386, 1170
BspQI GCTCTTC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 1359
BsrBI CCGCTC 1 cut(s) 1432
BsrDI GCAATG 2 cut(s) 408, 467
BsrI ACTGG 3 cut(s) 395, 834, 943
BssECI CCNNGG 2 cut(s) 952, 1279
BssMI GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
BssSI CACGAG 2 cut(s) 143, 232
BssT1I CCWWGG 2 cut(s) 952, 1279
Bst2BI CACGAG 2 cut(s) 143, 232
Bst4CI ACNGT 2 cut(s) 1072, 1091
Bst6I CTCTTC 1 cut(s) 511
BstC8I GCNNGC 5 cut(s) 45, 64, 474, 904, 1125
BstDEI CTNAG 4 cut(s) 330, 1108, 1355, 1385
BstDSI CCRYGG 2 cut(s) 952, 1279
BstF5I GGATG 4 cut(s) 273, 817, 928, 948
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 6 cut(s) 142, 156, 394, 871, 1044, 1165
BstMAI GTCTC 1 cut(s) 879
BstMBI GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
BstMWI GCNNNNNNNGC 6 cut(s) 38, 44, 68, 413, 422, 623
BstSFI CTRYAG 1 cut(s) 1185
BstV1I GCAGC 6 cut(s) 44, 47, 121, 425, 610, 1114
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 2 cut(s) 868, 1041
BstXI CCANNNNNNTGG 1 cut(s) 1222
BstYI RGATCY 2 cut(s) 868, 1041
BsuRI GGCC 2 cut(s) 120, 149
BtgI CCRYGG 2 cut(s) 952, 1279
BtsCI GGATG 4 cut(s) 273, 817, 928, 948
Cac8I GCNNGC 5 cut(s) 45, 64, 474, 904, 1125
CaiI CAGNNNCTG 1 cut(s) 1156
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 52, 1049
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 347, 1360
CviAII CATG 6 cut(s) 220, 264, 363, 953, 970, 1280
CviQI GTAC 2 cut(s) 347, 1360
DdeI CTNAG 4 cut(s) 330, 1108, 1355, 1385
DpnI GATC 6 cut(s) 141, 155, 393, 870, 1043, 1164
DpnII GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
EciI GGCGGA 1 cut(s) 730
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 952, 1279
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 52, 1049
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 2 cut(s) 1178, 1288
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 2 cut(s) 191, 886
EcoT14I CCWWGG 2 cut(s) 952, 1279
EcoT22I ATGCAT 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 952, 1279
FaeI CATG 6 cut(s) 223, 267, 366, 956, 973, 1283
FaqI GGGAC 6 cut(s) 184, 370, 581, 980, 995, 1035
FatI CATG 6 cut(s) 219, 263, 362, 952, 969, 1279
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 9 cut(s) 6, 33, 36, 39, 110, 414, 624, 1121, 1128
FokI GGATG 4 cut(s) 280, 824, 935, 935
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 9 cut(s) 6, 33, 36, 39, 110, 414, 624, 1121, 1128
FspBI CTAG 2 cut(s) 350, 618
GlaI GCGC 1 cut(s) 42
GluI GCNGC 9 cut(s) 6, 33, 36, 39, 110, 414, 624, 1121, 1128
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 2 cut(s) 120, 149
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 43
Hin1II CATG 6 cut(s) 223, 267, 366, 956, 973, 1283
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 2 cut(s) 160, 1075
HindII GTYRAC 2 cut(s) 160, 1075
HinfI GANTC 5 cut(s) 82, 197, 683, 850, 1019
HphI GGTGA 3 cut(s) 124, 971, 1424
Hpy166II GTNNAC 5 cut(s) 160, 827, 1075, 1140, 1421
Hpy188I TCNGA 7 cut(s) 59, 87, 175, 331, 445, 1356, 1443
Hpy188III TCNNGA 2 cut(s) 143, 1110
Hpy8I GTNNAC 5 cut(s) 160, 827, 1075, 1140, 1421
Hpy99I CGWCG 3 cut(s) 26, 161, 164
HpyAV CCTTC 9 cut(s) 4, 43, 274, 300, 318, 597, 937, 1153, 1312
HpyCH4III ACNGT 2 cut(s) 1072, 1091
HpyCH4V TGCA 9 cut(s) 219, 413, 476, 548, 626, 1033, 1130, 1187, 1274
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 44, 68, 413, 422, 623
HpyF3I CTNAG 4 cut(s) 330, 1108, 1355, 1385
Hsp92II CATG 6 cut(s) 223, 267, 366, 956, 973, 1283
HspAI GCGC 1 cut(s) 41
KpnI GGTACC 1 cut(s) 1363
Kzo9I GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
LguI GCTCTTC 1 cut(s) 511
LmnI GCTCC 6 cut(s) 87, 404, 457, 556, 652, 994
Lsp1109I GCAGC 6 cut(s) 44, 47, 121, 425, 610, 1114
LweI GCATC 4 cut(s) 80, 802, 1020, 1336
MaeI CTAG 2 cut(s) 350, 618
MaeIII GTNAC 2 cut(s) 578, 934
MalI GATC 6 cut(s) 141, 155, 393, 870, 1043, 1164
MbiI CCGCTC 1 cut(s) 1432
MboI GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
MboII GAAGA 4 cut(s) 66, 498, 859, 1097
MflI RGATCY 2 cut(s) 868, 1041
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 8 cut(s) 191, 239, 354, 367, 720, 803, 886, 1286
MlyI GAGTC 3 cut(s) 76, 206, 1013
MmeI TCCRAC 3 cut(s) 198, 382, 900
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 957
MspA1I CMGCKG 2 cut(s) 38, 416
MwoI GCNNNNNNNGC 6 cut(s) 38, 44, 68, 413, 422, 623
NcoI CCATGG 2 cut(s) 952, 1279
NdeII GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
NlaIII CATG 6 cut(s) 223, 267, 366, 956, 973, 1283
NlaIV GGNNCC 3 cut(s) 406, 1051, 1361
NmeAIII GCCGAG 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 511
PfeI GAWTC 2 cut(s) 683, 850
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 9 cut(s) 7, 34, 37, 40, 111, 415, 625, 1122, 1129
PleI GAGTC 3 cut(s) 76, 205, 1013
PpsI GAGTC 3 cut(s) 76, 205, 1013
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 779
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 406, 1051, 1361
PspPI GGNCC 2 cut(s) 52, 1049
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 1156
PsuI RGATCY 2 cut(s) 868, 1041
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 348, 1361
RsaNI GTAC 2 cut(s) 347, 1360
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 1 cut(s) 233
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 511
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 9 cut(s) 6, 33, 36, 39, 110, 414, 624, 1121, 1128
Sau3AI GATC 6 cut(s) 139, 153, 391, 868, 1041, 1162
Sau96I GGNCC 2 cut(s) 52, 1049
SchI GAGTC 3 cut(s) 76, 206, 1013
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 4 cut(s) 80, 802, 1020, 1336
SfcI CTRYAG 1 cut(s) 1185
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 2 cut(s) 52, 1049
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 3 cut(s) 125, 257, 979
SmoI CTYRAG 3 cut(s) 125, 257, 979
SpeI ACTAGT 1 cut(s) 349
Sse9I AATT 8 cut(s) 191, 239, 354, 367, 720, 803, 886, 1286
SsiI CCGC 6 cut(s) 5, 38, 715, 854, 1121, 1430
SspMI CTAG 2 cut(s) 350, 618
SstI GAGCTC 1 cut(s) 233
StyI CCWWGG 2 cut(s) 952, 1279
TaaI ACNGT 2 cut(s) 1072, 1091
TaqI TCGA 5 cut(s) 21, 159, 195, 1005, 1330
TasI AATT 8 cut(s) 191, 239, 354, 367, 720, 803, 886, 1286
TatI WGTACW 1 cut(s) 346
TauI GCSGC 3 cut(s) 8, 41, 1123
TfiI GAWTC 2 cut(s) 683, 850
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TseI GCWGC 6 cut(s) 32, 35, 109, 413, 623, 1127
TspDTI ATGAA 3 cut(s) 284, 833, 1208
TspGWI ACGGA 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 52, 1049
XapI RAATTY 3 cut(s) 191, 886, 1286
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 350, 618
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.