Rroxscaffold_7G00178290

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
18023653 .. 18025847
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178290.1

Sequence Viewer

Length: 1152 bp
ATGTTGATCTGTTTTCCAGTGGTGGCCCTTGATCCAGTTGTCGGAGCCATTGCGGCCGGTAATGCTGTGGTTGTAAAACCGTCGGAACTTGCTCCAGCCACATCGTCATTGCTTGCTAAACTATTGGGAAGTAACATGGATAACTCTTGTGTTAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTATTAGAGCAAAAGTGGGACAAAATATGTTACACAGGCAACCGAAGAGTGGGACGGATAGTGATGGCTAGCGCCGTGAAGCACCTTACACCAGTCCTTTTAGAGCTCGGAGGAAAATGTCCAGCTGTGGTTGATTCTGGCATTGACTTACAAGTCGCAAGTAGGCGGATTGTTGTAGGAAAGTGGGGGAGTAATAATGGACAGGCTTGCGTTGCACCTGATTACATGTTGACCACAAATGATTTTGCTCCTCAGTTGGTGGAGGCCCTAAAACGTGAATTGGATAACTTTTTCGGGAAGAATCCACTTCAATCTAAAGATTTGTCTCGTATTGTTAATTCTAATCACTATGCTCGCTTGACAAAGCTCTTGGATGAGGAGGAGGTTTCCGGTAAGATTGTCCATGGAGGTGAAAGAGATTTAAGCAACTTGAGGATAGCTCCTACCATCTTACTCGATGTCCCACAAGACTCTCTGATCATGAATGAGGAAATATTTGGTCCCTTGCTTCCCATTGTCACGGTTGACAAGGTGGAAGACAGTTTTGATTTGATCAAAACAGGAACAAAGCCTCTTGCTGCATATTTGTTTACCAACAACAAGAAGCTGAAGGATCACTTTGTAAGGAGCGTCTCAGCAGGAGGTTTAGTTATCAATGACACTATCGTACATCTTGCTGTTGCATCTTTGCCGTTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTCGAAGCTTTCAGCCATAAGAAGGCGGTTATTTATCGAGGTTTTGCCGGAGATATTTCTCTGAGGTACCCTCCATACACAATGGGTAAGCTAAGTCTTCTGAAGGCTATGGTTAGTGGTGATAGTATTTGGGGCATAATCTGGGCCCTGATGGTTTACACAATCCTCAATACTTTTAAATCACTTGCTCGTATACTGAGATCTCCCAAATCAGAGTGA

Protein Analysis

383

Amino Acids

41.41

Weight (kDa)

8.66

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 10 - 321 2e-62 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
Acc65I GGTACC 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 999
AccI GTMKAC 1 cut(s) 1126
AciI CCGC 3 cut(s) 53, 355, 959
AclWI GGATC 2 cut(s) 26, 810
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 926
AcuI CTGAAG 2 cut(s) 818, 1055
AfaI GTAC 2 cut(s) 858, 1001
AfiI CCNNNNNNNGG 4 cut(s) 41, 238, 887, 955
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 1 cut(s) 500
AluBI AGCT 7 cut(s) 295, 314, 556, 629, 796, 941, 1024
AluI AGCT 7 cut(s) 295, 314, 556, 629, 796, 941, 1024
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 519, 826
AlwI GGATC 2 cut(s) 26, 810
AoxI GGCC 4 cut(s) 24, 54, 453, 1077
ApaI GGGCCC 1 cut(s) 1081
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 1 cut(s) 926
Asp718I GGTACC 1 cut(s) 999
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 5 cut(s) 25, 454, 689, 1077, 1078
AsuHPI GGTGA 2 cut(s) 611, 1064
AsuII TTCGAA 1 cut(s) 936
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 2 cut(s) 297, 1081
BbsI GAAGAC 2 cut(s) 732, 1022
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 754
BccI CCATC 3 cut(s) 247, 644, 1078
BceAI ACGGC 2 cut(s) 248, 865
BclI TGATCA 2 cut(s) 666, 741
BcoDI GTCTC 2 cut(s) 519, 826
BfaI CTAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 53
BglII AGATCT 1 cut(s) 1133
BisI GCNGC 2 cut(s) 54, 768
BlsI GCNGC 2 cut(s) 55, 769
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 5 cut(s) 25, 454, 689, 1077, 1078
BmiI GGNNCC 4 cut(s) 46, 691, 1001, 1079
BmsI GCATC 1 cut(s) 881
BmtI GCTAGC 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 732, 1022
BplI GAGNNNNNCTC 4 cut(s) 613, 645, 988, 1020
BpmI CTGGAG 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 592, 919
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 238, 887, 955
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 17, 35, 281
Bse3DI GCAATG 2 cut(s) 48, 107
BseDI CCNNGG 2 cut(s) 592, 919
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 4 cut(s) 41, 238, 887, 955
BseMI GCAATG 2 cut(s) 48, 107
BseMII CTCAG 4 cut(s) 455, 837, 986, 1121
BseNI ACTGG 3 cut(s) 17, 35, 281
BseRI GAGGAG 4 cut(s) 429, 581, 584, 903
BseSI GKGCMC 1 cut(s) 1081
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 26, 56, 455, 1079
BshNI GGYRCC 1 cut(s) 999
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 57, 579, 981
BslFI GGGAC 4 cut(s) 221, 255, 635, 675
BslI CCNNNNNNNGG 4 cut(s) 41, 238, 887, 955
BsmAI GTCTC 2 cut(s) 519, 826
BsmBI CGTCTC 1 cut(s) 826
BsmFI GGGAC 4 cut(s) 221, 255, 635, 675
BsnI GGCC 4 cut(s) 26, 56, 455, 1079
Bsp119I TTCGAA 1 cut(s) 936
Bsp120I GGGCCC 1 cut(s) 1077
Bsp1286I GDGCHC 2 cut(s) 297, 1081
Bsp143I GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
Bsp19I CCATGG 2 cut(s) 592, 919
BspACI CCGC 3 cut(s) 53, 355, 959
BspANI GGCC 4 cut(s) 26, 56, 455, 1079
BspCNI CTCAG 4 cut(s) 454, 836, 987, 1122
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 4 cut(s) 46, 691, 1001, 1079
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 2 cut(s) 26, 810
BspT104I TTCGAA 1 cut(s) 936
BspT107I GGYRCC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 48, 107
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 3 cut(s) 17, 35, 281
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 592, 919
BssMI GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
BssNAI GTATAC 1 cut(s) 1127
BssT1I CCWWGG 2 cut(s) 592, 919
Bst1107I GTATAC 1 cut(s) 1127
Bst4CI ACNGT 3 cut(s) 81, 712, 731
Bst6I CTCTTC 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 936
BstC8I GCNNGC 4 cut(s) 114, 259, 397, 544
BstDEI CTNAG 5 cut(s) 441, 823, 995, 1025, 1130
BstDSI CCRYGG 2 cut(s) 592, 919
BstF5I GGATG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 6 cut(s) 9, 34, 669, 744, 805, 1136
BstMAI GTCTC 2 cut(s) 519, 826
BstMBI GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 53, 62, 401
BstNSI RCATGY 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 1081
BstV1I GCAGC 1 cut(s) 754
BstV2I GAAGAC 2 cut(s) 732, 1022
BstX2I RGATCY 1 cut(s) 1133
BstYI RGATCY 1 cut(s) 1133
BstZ17I GTATAC 1 cut(s) 1127
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 4 cut(s) 26, 56, 455, 1079
BtgI CCRYGG 2 cut(s) 592, 919
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 4 cut(s) 114, 259, 397, 544
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 5 cut(s) 25, 454, 689, 1077, 1078
CseI GACGC 1 cut(s) 808
Csp6I GTAC 2 cut(s) 857, 1000
CviAII CATG 5 cut(s) 136, 415, 593, 670, 920
CviQI GTAC 2 cut(s) 857, 1000
DdeI CTNAG 5 cut(s) 441, 823, 995, 1025, 1130
DpnI GATC 6 cut(s) 8, 33, 668, 743, 804, 1135
DpnII GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
DraI TTTAAA 1 cut(s) 1111
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EciI GGCGGA 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 592, 919
Eco24I GRGCYC 2 cut(s) 297, 1081
Eco47I GGWCC 1 cut(s) 689
Eco52I CGGCCG 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 818, 1055
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 2 cut(s) 454, 1078
EcoT14I CCWWGG 2 cut(s) 592, 919
EcoT38I GRGCYC 2 cut(s) 297, 1081
ErhI CCWWGG 2 cut(s) 592, 919
Esp3I CGTCTC 1 cut(s) 826
FaeI CATG 5 cut(s) 139, 418, 596, 673, 923
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 4 cut(s) 221, 255, 635, 675
FatI CATG 5 cut(s) 135, 414, 592, 669, 919
FbaI TGATCA 2 cut(s) 666, 741
FblI GTMKAC 1 cut(s) 1126
Fnu4HI GCNGC 2 cut(s) 54, 768
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 2 cut(s) 297, 1081
Fsp4HI GCNGC 2 cut(s) 54, 768
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 262
GluI GCNGC 2 cut(s) 54, 768
GsuI CTGGAG 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 4 cut(s) 26, 56, 455, 1079
HapII CCGG 3 cut(s) 57, 579, 981
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 263
Hin1II CATG 5 cut(s) 139, 418, 596, 673, 923
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 2 cut(s) 420, 715
HindII GTYRAC 2 cut(s) 420, 715
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 3 cut(s) 323, 490, 659
HpaII CCGG 3 cut(s) 57, 579, 981
HphI GGTGA 2 cut(s) 611, 1064
Hpy166II GTNNAC 5 cut(s) 420, 715, 780, 1090, 1127
Hpy188I TCNGA 7 cut(s) 44, 85, 299, 666, 996, 1035, 1147
Hpy188III TCNNGA 2 cut(s) 484, 670
Hpy8I GTNNAC 5 cut(s) 420, 715, 780, 1090, 1127
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 793, 949, 1030
HpyCH4III ACNGT 3 cut(s) 81, 712, 731
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 188, 404, 770, 872, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 62, 401
HpyF3I CTNAG 5 cut(s) 441, 823, 995, 1025, 1130
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 5 cut(s) 139, 418, 596, 673, 923
HspAI GCGC 1 cut(s) 261
KpnI GGTACC 1 cut(s) 1003
Ksp22I TGATCA 2 cut(s) 666, 741
Kzo9I GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
LmnI GCTCC 5 cut(s) 44, 97, 442, 634, 816
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 1 cut(s) 881
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 3 cut(s) 131, 218, 706
MalI GATC 6 cut(s) 8, 33, 668, 743, 804, 1135
MboI GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
MboII GAAGA 4 cut(s) 246, 499, 737, 1022
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 2 cut(s) 297, 1081
MluCI AATT 3 cut(s) 467, 526, 926
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 2 cut(s) 22, 63
MseI TTAA 3 cut(s) 525, 611, 1110
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 3 cut(s) 57, 579, 981
MwoI GCNNNNNNNGC 3 cut(s) 53, 62, 401
NcoI CCATGG 2 cut(s) 592, 919
NdeII GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 5 cut(s) 139, 418, 596, 673, 923
NlaIV GGNNCC 4 cut(s) 46, 691, 1001, 1079
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 1 cut(s) 936
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 414
PfeI GAWTC 2 cut(s) 323, 490
PkrI GCNGC 2 cut(s) 55, 769
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PscI ACATGT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 4 cut(s) 46, 691, 1001, 1079
PspOMI GGGCCC 1 cut(s) 1077
PspPI GGNCC 5 cut(s) 25, 454, 689, 1077, 1078
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 858, 1001
RsaNI GTAC 2 cut(s) 857, 1000
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 525, 611, 1110
SatI GCNGC 2 cut(s) 54, 768
Sau3AI GATC 6 cut(s) 6, 31, 666, 741, 802, 1133
Sau96I GGNCC 5 cut(s) 25, 454, 689, 1077, 1078
SchI GAGTC 1 cut(s) 653
SduI GDGCHC 2 cut(s) 297, 1081
SfaNI GCATC 1 cut(s) 881
SfuI TTCGAA 1 cut(s) 936
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 3 cut(s) 467, 526, 926
SsiI CCGC 3 cut(s) 53, 355, 959
SspI AATATT 1 cut(s) 684
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 297
StyI CCWWGG 2 cut(s) 592, 919
TaaI ACNGT 3 cut(s) 81, 712, 731
TaiI ACGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 645, 936, 970
TasI AATT 3 cut(s) 467, 526, 926
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 323, 490
Tru1I TTAA 3 cut(s) 525, 611, 1110
Tru9I TTAA 3 cut(s) 525, 611, 1110
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 1 cut(s) 926
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 1126
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.