Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

21732151 .. 21739806

Gene Structure 7656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGCGGAGGAGGTGCAGAAGGTGGTGTTCGATTCGGGAGAGGCGGCGGCGATGGTGGAGGAGCTGAGGGGGAGTTATAGGTCTGGGAAGACGAGGAGCTACGAGTGGAGAGTGTCGCAGTTGAAGAAGCTGAAGAAGATAACAGAGTTTCACGAGAAGGAAATCGTTGAGGCTCTCCGGTCTGACCTGTCCAAGCCGGAAACTGAATCCTTCGTTCAAGAGATAGGCATGTTGAAGAGCGCGTGTAAATTAGCCATTAAACAACTGAAGTCATGGATGAAGCCAGAGACGGCTAAAACTTCAATGACCACTTTCCCTTCGTCAGCTGAAATAGTATCTGAGCCTCTTGGTGTTATACTAATAATTTCAGCTTGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCCGGGAATGCTGTGGTTCTAAAACCATCAGAACTTGCTCCTGCTACATCGTCATTGCTTGCAAAACTATTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTGGTTGAGGGGGCTGTTGCTGAAACATCTGCATTATTGGAGCAGAAATGGGACAAAATCTGTTACACAGGAAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTCACACCTGTCCTTTTGGAGCTTGGAGGAAAATGTCCTGTTGTTGTTGATTCTGGCATTAACTTACAAGTTGCAAGTAGGCGGATAATTGCAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCGTTTCCCCTGACCACATTATAACAACAAAAGAATTTGCTACTAAATTGGTGGATGCCTTGAAAAGTGAACTGGATAACTTCTATGGGAAGAATCCACTACAATCTAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGATCGCTTGACAAAGCTGTTGGATGAAGATAAGATTTCTGGTAAGGTCATCCATGGAGGTGAAAGGGACAAAAACAACTTGAGGATAGCTCCCACCATCTTACTTGATGTTCCACAAGACTCCCTCATAATGCAGGAGGAGATCTTTGGTCCCTTGCTTCCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAACCTCAGGAACAAAGCCTCTTGCTGCATATTTGTTCACCAACAATCAGAAGCTGAAGGATCACTTTGTCGGGAATGTCTCTGCAGGAGGTTTGCTTATCAATGACACTACCCTCCATCTTGCTGTTCCCACCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTATCGAGGTTTCTTTGGAGATGCTGCTGTGAGGTACCCTCCTTACACAAAGGGCAAGCTAACTCTTATGAAGGCTCTGGTTGGCGGTAGTCTTTTGGGGATAATCCGCGCTCTGTTCGGATGGTCCGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

490

Amino Acids

53.2

Weight (kDa)

8.36

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	17 - 444	2e-81	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
Acc65I	GGTACC	1 cut(s)	1368
AccB1I	GGYRCC	1 cut(s)	1368
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccII	CGCG	2 cut(s)	242, 1443
AciI	CCGC	6 cut(s)	5, 44, 47, 724, 1419, 1441
AclWI	GGATC	2 cut(s)	395, 1179
AcsI	RAATTY	3 cut(s)	800, 895, 1295
AcuI	CTGAAG	4 cut(s)	152, 287, 1187, 1297
AfaI	GTAC	1 cut(s)	1370
AfiI	CCNNNNNNNGG	2 cut(s)	410, 1256
AgsI	TTSAA	6 cut(s)	124, 218, 235, 303, 829, 1307
Alw26I	GTCTC	3 cut(s)	281, 888, 1195
AlwI	GGATC	2 cut(s)	395, 1179
AlwNI	CAGNNNCTG	1 cut(s)	1165
ApeKI	GCWGC	4 cut(s)	422, 632, 1136, 1358
ApoI	RAATTY	3 cut(s)	800, 895, 1295
Asp718I	GGTACC	1 cut(s)	1368
AspLEI	GCGC	2 cut(s)	242, 1445
AspS9I	GGNCC	2 cut(s)	1058, 1458
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	980, 1141
AvaII	GGWCC	2 cut(s)	1058, 1458
AxyI	CCTNAGG	1 cut(s)	1117
BanI	GGYRCC	1 cut(s)	1368
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	95, 1101
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	434, 619, 1123, 1345
BccI	CCATC	6 cut(s)	46, 457, 616, 1013, 1236, 1449
BceAI	ACGGC	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	281, 888, 1195
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	1194
BglII	AGATCT	1 cut(s)	1050
BisI	GCNGC	6 cut(s)	45, 48, 423, 633, 1137, 1359
BlsI	GCNGC	6 cut(s)	46, 49, 424, 634, 1138, 1360
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	2 cut(s)	1058, 1458
BmgT120I	GGNCC	2 cut(s)	1058, 1458
BmiI	GGNNCC	3 cut(s)	415, 1060, 1370
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	811, 1345
BpiI	GAAGAC	2 cut(s)	95, 1101
BplI	GAGNNNNNCTC	4 cut(s)	982, 1014, 1357, 1389
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	1009
BpuMI	CCSGG	1 cut(s)	427
BsaJI	CCNNGG	3 cut(s)	961, 1288, 1461
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 1256
Bse1I	ACTGG	2 cut(s)	404, 843
Bse21I	CCTNAGG	1 cut(s)	1117
Bse3DI	GCAATG	2 cut(s)	417, 476
BseDI	CCNNGG	3 cut(s)	961, 1288, 1461
BseGI	GGATG	5 cut(s)	282, 826, 937, 957, 1460
BseLI	CCNNNNNNNGG	2 cut(s)	410, 1256
BseMI	GCAATG	2 cut(s)	417, 476
BseMII	CTCAG	3 cut(s)	56, 330, 1131
BseNI	ACTGG	2 cut(s)	404, 843
BseRI	GAGGAG	5 cut(s)	23, 74, 109, 1061, 1272
BseXI	GCAGC	4 cut(s)	434, 619, 1123, 1345
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	242, 1443
BshNI	GGYRCC	1 cut(s)	1368
BsiSI	CCGG	3 cut(s)	178, 197, 426
BslFI	GGGAC	4 cut(s)	379, 590, 989, 1044
BslI	CCNNNNNNNGG	2 cut(s)	410, 1256
BsmAI	GTCTC	3 cut(s)	281, 888, 1195
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	4 cut(s)	379, 590, 989, 1044
BsmI	GAATGC	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	400, 910, 1050, 1171
Bsp19I	CCATGG	2 cut(s)	961, 1288
BspACI	CCGC	6 cut(s)	5, 44, 47, 724, 1419, 1441
BspCNI	CTCAG	3 cut(s)	57, 331, 1130
BspFNI	CGCG	2 cut(s)	242, 1443
BspLI	GGNNCC	3 cut(s)	415, 1060, 1370
BspMAI	CTGCAG	1 cut(s)	1198
BspPI	GGATC	2 cut(s)	395, 1179
BspQI	GCTCTTC	2 cut(s)	230, 520
BspT107I	GGYRCC	1 cut(s)	1368
BsrDI	GCAATG	2 cut(s)	417, 476
BsrI	ACTGG	2 cut(s)	404, 843
BssECI	CCNNGG	3 cut(s)	961, 1288, 1461
BssMI	GATC	4 cut(s)	400, 910, 1050, 1171
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	961, 1288
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	1081
Bst6I	CTCTTC	3 cut(s)	230, 520, 598
BstC8I	GCNNGC	3 cut(s)	483, 766, 1391
BstDEI	CTNAG	4 cut(s)	65, 339, 1117, 1467
BstDSI	CCRYGG	2 cut(s)	961, 1288
BstF5I	GGATG	5 cut(s)	282, 826, 937, 957, 1460
BstFNI	CGCG	2 cut(s)	242, 1443
BstHHI	GCGC	2 cut(s)	242, 1445
BstKTI	GATC	4 cut(s)	403, 913, 1053, 1174
BstMAI	GTCTC	3 cut(s)	281, 888, 1195
BstMBI	GATC	4 cut(s)	400, 910, 1050, 1171
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 431, 632
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	1194
BstUI	CGCG	2 cut(s)	242, 1443
BstV1I	GCAGC	4 cut(s)	434, 619, 1123, 1345
BstV2I	GAAGAC	2 cut(s)	95, 1101
BstX2I	RGATCY	1 cut(s)	1050
BstYI	RGATCY	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	1117
BtgI	CCRYGG	2 cut(s)	961, 1288
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	5 cut(s)	282, 826, 937, 957, 1460
Cac8I	GCNNGC	3 cut(s)	483, 766, 1391
CaiI	CAGNNNCTG	1 cut(s)	1165
CfoI	GCGC	2 cut(s)	242, 1445
Cfr13I	GGNCC	2 cut(s)	1058, 1458
Csp6I	GTAC	1 cut(s)	1369
CviAII	CATG	4 cut(s)	229, 273, 962, 1289
CviQI	GTAC	1 cut(s)	1369
DdeI	CTNAG	4 cut(s)	65, 339, 1117, 1467
DpnI	GATC	4 cut(s)	402, 912, 1052, 1173
DpnII	GATC	4 cut(s)	400, 910, 1050, 1171
Eam1104I	CTCTTC	3 cut(s)	230, 520, 598
EarI	CTCTTC	3 cut(s)	230, 520, 598
EciI	GGCGGA	2 cut(s)	20, 739
Eco130I	CCWWGG	2 cut(s)	961, 1288
Eco47I	GGWCC	2 cut(s)	1058, 1458
Eco57I	CTGAAG	4 cut(s)	152, 287, 1187, 1297
Eco81I	CCTNAGG	1 cut(s)	1117
EcoRI	GAATTC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	961, 1288
ErhI	CCWWGG	2 cut(s)	961, 1288
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	4 cut(s)	232, 276, 965, 1292
FalI	AAGNNNNNCTT	2 cut(s)	1160, 1192
FaqI	GGGAC	4 cut(s)	379, 590, 989, 1044
FatI	CATG	4 cut(s)	228, 272, 961, 1288
Fnu4HI	GCNGC	6 cut(s)	45, 48, 423, 633, 1137, 1359
FokI	GGATG	4 cut(s)	289, 833, 944, 944
Fsp4HI	GCNGC	6 cut(s)	45, 48, 423, 633, 1137, 1359
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	2 cut(s)	241, 1444
GluI	GCNGC	6 cut(s)	45, 48, 423, 633, 1137, 1359
HapII	CCGG	3 cut(s)	178, 197, 426
HhaI	GCGC	2 cut(s)	242, 1445
Hin1II	CATG	4 cut(s)	232, 276, 965, 1292
Hin6I	GCGC	2 cut(s)	240, 1443
HinP1I	GCGC	2 cut(s)	240, 1443
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	5 cut(s)	32, 206, 692, 859, 1028
HpaII	CCGG	3 cut(s)	178, 197, 426
HphI	GGTGA	2 cut(s)	980, 1141
Hpy166II	GTNNAC	3 cut(s)	836, 1084, 1149
Hpy188I	TCNGA	6 cut(s)	184, 340, 454, 1161, 1454, 1462
Hpy188III	TCNNGA	5 cut(s)	36, 152, 218, 1119, 1183
Hpy8I	GTNNAC	3 cut(s)	836, 1084, 1149
HpyAV	CCTTC	8 cut(s)	13, 151, 220, 327, 606, 1162, 1321, 1399
HpyCH4III	ACNGT	1 cut(s)	1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 431, 632
HpyF3I	CTNAG	4 cut(s)	65, 339, 1117, 1467
Hsp92II	CATG	4 cut(s)	232, 276, 965, 1292
HspAI	GCGC	2 cut(s)	240, 1443
KpnI	GGTACC	1 cut(s)	1372
Kzo9I	GATC	4 cut(s)	400, 910, 1050, 1171
LguI	GCTCTTC	2 cut(s)	230, 520
LmnI	GCTCC	7 cut(s)	61, 96, 413, 466, 565, 661, 1003
Lsp1109I	GCAGC	4 cut(s)	434, 619, 1123, 1345
LweI	GCATC	2 cut(s)	811, 1345
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	4 cut(s)	402, 912, 1052, 1173
MboI	GATC	4 cut(s)	400, 910, 1050, 1171
MflI	RGATCY	1 cut(s)	1050
MluCI	AATT	8 cut(s)	248, 363, 376, 729, 800, 812, 895, 1295
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	391, 909
MseI	TTAA	2 cut(s)	258, 702
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	178, 197, 426
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	436
MvnI	CGCG	2 cut(s)	242, 1443
MwoI	GCNNNNNNNGC	3 cut(s)	422, 431, 632
NciI	CCSGG	1 cut(s)	427
NcoI	CCATGG	2 cut(s)	961, 1288
NdeII	GATC	4 cut(s)	400, 910, 1050, 1171
NlaIII	CATG	4 cut(s)	232, 276, 965, 1292
NlaIV	GGNNCC	3 cut(s)	415, 1060, 1370
NspI	RCATGY	1 cut(s)	232
PciSI	GCTCTTC	2 cut(s)	230, 520
PcsI	WCGNNNNNNNCGW	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	4 cut(s)	32, 206, 692, 859
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	46, 49, 424, 634, 1138, 1360
PleI	GAGTC	1 cut(s)	1022
PpsI	GAGTC	1 cut(s)	1022
PsiI	TTATAA	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	415, 1060, 1370
PspPI	GGNCC	2 cut(s)	1058, 1458
PstI	CTGCAG	1 cut(s)	1198
PstNI	CAGNNNCTG	1 cut(s)	1165
PsuI	RGATCY	1 cut(s)	1050
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	1370
RsaNI	GTAC	1 cut(s)	1369
RseI	CAYNNNNRTG	1 cut(s)	966
SapI	GCTCTTC	2 cut(s)	230, 520
SaqAI	TTAA	2 cut(s)	258, 702
SatI	GCNGC	6 cut(s)	45, 48, 423, 633, 1137, 1359
Sau3AI	GATC	4 cut(s)	400, 910, 1050, 1171
Sau96I	GGNCC	2 cut(s)	1058, 1458
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	811, 1345
SfcI	CTRYAG	1 cut(s)	1194
SinI	GGWCC	2 cut(s)	1058, 1458
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	988
SmoI	CTYRAG	1 cut(s)	988
Sse9I	AATT	8 cut(s)	248, 363, 376, 729, 800, 812, 895, 1295
SsiI	CCGC	6 cut(s)	5, 44, 47, 724, 1419, 1441
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	2 cut(s)	961, 1288
TaaI	ACNGT	1 cut(s)	1081
TaqI	TCGA	2 cut(s)	30, 1339
TasI	AATT	8 cut(s)	248, 363, 376, 729, 800, 812, 895, 1295
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	4 cut(s)	32, 206, 692, 859
Tru1I	TTAA	2 cut(s)	258, 702
Tru9I	TTAA	2 cut(s)	258, 702
TseI	GCWGC	4 cut(s)	422, 632, 1136, 1358
TspDTI	ATGAA	3 cut(s)	293, 948, 1418
TspGWI	ACGGA	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	1058, 1458
XapI	RAATTY	3 cut(s)	800, 895, 1295
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.