Rw6G032370

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
56535286 .. 56548074
12789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032370.1

Sequence Viewer

Length: 1476 bp
ATGGACACGGCGGAGGTGGTGCAGAAGGTGGTGTTCGATTCGGGAGAGGCGGCGACGATGGTGGAGGAGCTGAGGGCGAGTTATAGGTCTGGGAAGACGAGGAGCTACGAGTGGAGAGTGTCGCAGTTGCAGAAGCTGGAGAAGGTGACGGAGTTTCATGAACAGGAAATCGTTGAGGCCCTCCGGTCGGACCTGTCTAAACCGGAATTCGAAGCCTTCGTTCAAGAGATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCGTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGTGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTCCTTTTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCGTTTCCCCTGATTACATTTTAACAACAAAGGATTTTGCTTCTAAATTGGTGGATGCCTTGAAAAGTGAATTGGAGAACTTCTATGGGAAGAATCCACTACAATCAAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGATGAGGATAAGGTTTCTGGTAAGGTCATCCATGGAGGTGAAAGGGACACAAGCAACTTGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAAGACTCCCTGATTATGCAGGAGGAGATCTTTGGTCCGTTGCTTCCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAACCTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATGACTTCGTAAGGAATATATCTGCAGGAGGTTTGGTTATCAATGACACTACGATTCATCTTGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTATCGAGGTTTTTCTGGAGATGCTTCTGTGAGGTACCCTCCATACACAAAGGGGAAGCTAAGACTTCTAAAGGCTTTGGTCGGTGGTAGTCTATTGGGCATAATCCGCGCTCTATTTGGATGGTCTAAGGCTTAA

Protein Analysis

491

Amino Acids

53.43

Weight (kDa)

8.4

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 446 3.4e-82 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1374
AccB1I GGYRCC 1 cut(s) 1374
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 1449
AciI CCGC 5 cut(s) 11, 50, 730, 1136, 1447
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 3 cut(s) 206, 901, 1301
AcuI CTGAAG 3 cut(s) 293, 1193, 1303
AfaI GTAC 2 cut(s) 363, 1376
AfiI CCNNNNNNNGG 3 cut(s) 187, 416, 1262
AgsI TTSAA 5 cut(s) 224, 241, 309, 835, 1313
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 894
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 2 cut(s) 136, 1171
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 428, 638, 1142
ApoI RAATTY 3 cut(s) 206, 901, 1301
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
Asp718I GGTACC 1 cut(s) 1374
AspLEI GCGC 1 cut(s) 1451
AspS9I GGNCC 3 cut(s) 178, 190, 1064
AsuHPI GGTGA 3 cut(s) 157, 515, 986
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 2 cut(s) 190, 1064
AxyI CCTNAGG 1 cut(s) 1123
BanI GGYRCC 1 cut(s) 1374
BanII GRGCYC 1 cut(s) 248
BauI CACGAG 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 101, 1107
Bbv12I GWGCWC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 440, 625, 1129
BccI CCATC 5 cut(s) 52, 463, 622, 1019, 1455
BceAI ACGGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 894
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 441, 1200
BglII AGATCT 1 cut(s) 1056
BisI GCNGC 5 cut(s) 51, 429, 639, 1136, 1143
BlsI GCNGC 5 cut(s) 52, 430, 640, 1137, 1144
Bme18I GGWCC 2 cut(s) 190, 1064
BmgT120I GGNCC 3 cut(s) 178, 190, 1064
BmiI GGNNCC 2 cut(s) 421, 1376
BmsI GCATC 3 cut(s) 714, 817, 1351
BpiI GAAGAC 2 cut(s) 101, 1107
BplI GAGNNNNNCTC 4 cut(s) 988, 1020, 1363, 1395
BpmI CTGGAG 3 cut(s) 158, 590, 1377
Bpu10I CCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 1015
BsaJI CCNNGG 2 cut(s) 967, 1294
BsaWI WCCGGW 2 cut(s) 183, 202
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 1197, 1227
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 416, 1262
Bse1I ACTGG 2 cut(s) 410, 573
Bse21I CCTNAGG 1 cut(s) 1123
Bse3DI GCAATG 2 cut(s) 423, 482
BseDI CCNNGG 2 cut(s) 967, 1294
BseGI GGATG 6 cut(s) 288, 832, 943, 963, 1183, 1466
BseLI CCNNNNNNNGG 3 cut(s) 187, 416, 1262
BseMI GCAATG 2 cut(s) 423, 482
BseMII CTCAG 3 cut(s) 62, 336, 1137
BseNI ACTGG 2 cut(s) 410, 573
BseRI GAGGAG 4 cut(s) 80, 115, 1067, 1278
BseXI GCAGC 3 cut(s) 440, 625, 1129
BsgI GTGCAG 2 cut(s) 41, 546
Bsh1236I CGCG 1 cut(s) 1449
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 1374
BsiEI CGRYCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 2 cut(s) 184, 203
BslFI GGGAC 4 cut(s) 385, 596, 995, 1010
BslI CCNNNNNNNGG 3 cut(s) 187, 416, 1262
BsmAI GTCTC 1 cut(s) 894
BsmFI GGGAC 4 cut(s) 385, 596, 995, 1010
BsnI GGCC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 406, 1056
Bsp19I CCATGG 2 cut(s) 967, 1294
BspACI CCGC 5 cut(s) 11, 50, 730, 1136, 1447
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 3 cut(s) 63, 337, 1136
BspFNI CGCG 1 cut(s) 1449
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 421, 1376
BspMAI CTGCAG 1 cut(s) 1204
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 2 cut(s) 236, 526
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 1374
BsrDI GCAATG 2 cut(s) 423, 482
BsrI ACTGG 2 cut(s) 410, 573
BssECI CCNNGG 2 cut(s) 967, 1294
BssMI GATC 2 cut(s) 406, 1056
BssSI CACGAG 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 967, 1294
Bst2BI CACGAG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 3 cut(s) 236, 526, 604
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 489, 772, 919, 1140
BstDEI CTNAG 5 cut(s) 71, 345, 1123, 1400, 1467
BstDSI CCRYGG 2 cut(s) 967, 1294
BstF5I GGATG 6 cut(s) 288, 832, 943, 963, 1183, 1466
BstFNI CGCG 1 cut(s) 1449
BstHHI GCGC 1 cut(s) 1451
BstKTI GATC 2 cut(s) 409, 1059
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 2 cut(s) 406, 1056
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 428, 437, 638, 1446
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 2 cut(s) 441, 1200
BstUI CGCG 1 cut(s) 1449
BstV1I GCAGC 3 cut(s) 440, 625, 1129
BstV2I GAAGAC 2 cut(s) 101, 1107
BstX2I RGATCY 1 cut(s) 1056
BstYI RGATCY 1 cut(s) 1056
Bsu36I CCTNAGG 1 cut(s) 1123
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 2 cut(s) 967, 1294
BtsCI GGATG 6 cut(s) 288, 832, 943, 963, 1183, 1466
Cac8I GCNNGC 4 cut(s) 489, 772, 919, 1140
CaiI CAGNNNCTG 2 cut(s) 136, 1171
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 1451
Cfr13I GGNCC 3 cut(s) 178, 190, 1064
Csp6I GTAC 2 cut(s) 362, 1375
CviAII CATG 6 cut(s) 158, 235, 279, 378, 968, 1295
CviQI GTAC 2 cut(s) 362, 1375
DdeI CTNAG 5 cut(s) 71, 345, 1123, 1400, 1467
DpnI GATC 2 cut(s) 408, 1058
DpnII GATC 2 cut(s) 406, 1056
Eam1104I CTCTTC 3 cut(s) 236, 526, 604
EarI CTCTTC 3 cut(s) 236, 526, 604
EciI GGCGGA 2 cut(s) 26, 745
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 967, 1294
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 190, 1064
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 3 cut(s) 293, 1193, 1303
Eco81I CCTNAGG 1 cut(s) 1123
EcoICRI GAGCTC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 206, 901
EcoT14I CCWWGG 2 cut(s) 967, 1294
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 967, 1294
FaeI CATG 6 cut(s) 161, 238, 282, 381, 971, 1298
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 4 cut(s) 385, 596, 995, 1010
FatI CATG 6 cut(s) 157, 234, 278, 377, 967, 1294
Fnu4HI GCNGC 5 cut(s) 51, 429, 639, 1136, 1143
FokI GGATG 5 cut(s) 295, 839, 950, 950, 1190
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 51, 429, 639, 1136, 1143
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 1450
GluI GCNGC 5 cut(s) 51, 429, 639, 1136, 1143
GsuI CTGGAG 3 cut(s) 158, 590, 1377
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 184, 203
HhaI GCGC 1 cut(s) 1451
Hin1II CATG 6 cut(s) 161, 238, 282, 381, 971, 1298
Hin6I GCGC 1 cut(s) 1449
HinP1I GCGC 1 cut(s) 1449
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HinfI GANTC 5 cut(s) 38, 698, 865, 1034, 1231
HpaII CCGG 2 cut(s) 184, 203
HphI GGTGA 3 cut(s) 157, 515, 986
Hpy166II GTNNAC 2 cut(s) 1090, 1155
Hpy188I TCNGA 3 cut(s) 190, 346, 460
Hpy188III TCNNGA 5 cut(s) 42, 158, 224, 1125, 1356
Hpy8I GTNNAC 2 cut(s) 1090, 1155
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 8 cut(s) 19, 136, 226, 289, 333, 612, 1168, 1327
HpyCH4III ACNGT 1 cut(s) 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 437, 638, 1446
HpyF3I CTNAG 5 cut(s) 71, 345, 1123, 1400, 1467
Hsp92II CATG 6 cut(s) 161, 238, 282, 381, 971, 1298
HspAI GCGC 1 cut(s) 1449
KpnI GGTACC 1 cut(s) 1378
Kzo9I GATC 2 cut(s) 406, 1056
LguI GCTCTTC 2 cut(s) 236, 526
LmnI GCTCC 7 cut(s) 67, 102, 419, 472, 571, 667, 1009
Lsp1109I GCAGC 3 cut(s) 440, 625, 1129
LweI GCATC 3 cut(s) 714, 817, 1351
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 145, 593
MalI GATC 2 cut(s) 408, 1058
MboI GATC 2 cut(s) 406, 1056
MboII GAAGA 6 cut(s) 106, 253, 513, 621, 874, 1112
MflI RGATCY 1 cut(s) 1056
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 9 cut(s) 206, 254, 369, 382, 735, 818, 842, 901, 1301
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 3 cut(s) 168, 397, 915
MseI TTAA 2 cut(s) 794, 1474
MslI CAYNNNNRTG 1 cut(s) 972
MspA1I CMGCKG 2 cut(s) 332, 431
MspI CCGG 2 cut(s) 184, 203
MvnI CGCG 1 cut(s) 1449
MwoI GCNNNNNNNGC 4 cut(s) 428, 437, 638, 1446
NcoI CCATGG 2 cut(s) 967, 1294
NdeII GATC 2 cut(s) 406, 1056
NlaIII CATG 6 cut(s) 161, 238, 282, 381, 971, 1298
NlaIV GGNNCC 2 cut(s) 421, 1376
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 210
PagI TCATGA 1 cut(s) 157
PciSI GCTCTTC 2 cut(s) 236, 526
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 4 cut(s) 38, 698, 865, 1231
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 5 cut(s) 52, 430, 640, 1137, 1144
PleI GAGTC 1 cut(s) 1028
PpsI GAGTC 1 cut(s) 1028
Psp124BI GAGCTC 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 421, 1376
PspPI GGNCC 3 cut(s) 178, 190, 1064
PstI CTGCAG 1 cut(s) 1204
PstNI CAGNNNCTG 2 cut(s) 136, 1171
PsuI RGATCY 1 cut(s) 1056
PvuII CAGCTG 2 cut(s) 332, 431
RsaI GTAC 2 cut(s) 363, 1376
RsaNI GTAC 2 cut(s) 362, 1375
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 248
SapI GCTCTTC 2 cut(s) 236, 526
SaqAI TTAA 2 cut(s) 794, 1474
SatI GCNGC 5 cut(s) 51, 429, 639, 1136, 1143
Sau3AI GATC 2 cut(s) 406, 1056
Sau96I GGNCC 3 cut(s) 178, 190, 1064
SchI GAGTC 1 cut(s) 1028
SduI GDGCHC 1 cut(s) 248
SfaNI GCATC 3 cut(s) 714, 817, 1351
SfcI CTRYAG 2 cut(s) 441, 1200
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 2 cut(s) 190, 1064
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
Sse9I AATT 9 cut(s) 206, 254, 369, 382, 735, 818, 842, 901, 1301
SsiI CCGC 5 cut(s) 11, 50, 730, 1136, 1447
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 248
StyI CCWWGG 2 cut(s) 967, 1294
TaaI ACNGT 1 cut(s) 1087
TaqI TCGA 4 cut(s) 36, 210, 1020, 1345
TasI AATT 9 cut(s) 206, 254, 369, 382, 735, 818, 842, 901, 1301
TatI WGTACW 1 cut(s) 361
TauI GCSGC 2 cut(s) 53, 1138
TfiI GAWTC 4 cut(s) 38, 698, 865, 1231
Tru1I TTAA 2 cut(s) 794, 1474
Tru9I TTAA 2 cut(s) 794, 1474
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 428, 638, 1142
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 4 cut(s) 146, 174, 299, 1223
TspGWI ACGGA 3 cut(s) 164, 621, 1056
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 190, 1064
XapI RAATTY 3 cut(s) 206, 901, 1301
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.