Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

57124192 .. 57137028

Gene Structure 12837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG384700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCGGCGAAGGTAGGATTCGACGGAGAAGACGCGGCGGCGCTGGTGAACGAGCTCCGATCGAGCTTCGCGTCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTCGCCACCTATCACGAGGCCGAGATCGTCAACGCTCTCAACTCCGACCTCTCCAAGCCGGAATTCGAGACCCTGATCTACGAGATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCGTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGTGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTCCTTTTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCATTTCCCCTGATTACATTTTAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCCTGAAAAGTGAATTGGAGAACTTCTATGGGAAGAATCCACTACAATCAAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGATGAGGATAAGGTTTCTGGTAAGGTCATCCATGGAGGTGAAAGGGACGCAAGCAACTTGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAAGACTCCCTGATTATGCAGGAGGAGATCTTTGGTCCGTTGCTTCCTATTATCACGGTAGGAACCAATTTGTTTGCGCGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

366

Amino Acids

39.62

Weight (kDa)

6.92

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	9 - 359	2.2e-64	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccII	CGCG	3 cut(s)	35, 71, 1093
AciI	CCGC	4 cut(s)	5, 35, 38, 715
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	2 cut(s)	191, 886
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	84, 401
AgsI	TTSAA	2 cut(s)	226, 294
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 812, 844
Alw21I	GWGCWC	2 cut(s)	57, 233
Alw26I	GTCTC	2 cut(s)	191, 879
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	118, 147
ApeKI	GCWGC	3 cut(s)	109, 413, 623
ApoI	RAATTY	2 cut(s)	191, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AspLEI	GCGC	2 cut(s)	43, 1093
AspS9I	GGNCC	1 cut(s)	1049
AsuHPI	GGTGA	3 cut(s)	58, 500, 971
AvaII	GGWCC	1 cut(s)	1049
BanII	GRGCYC	2 cut(s)	57, 233
BauI	CACGAG	2 cut(s)	143, 232
BbsI	GAAGAC	2 cut(s)	36, 66
Bbv12I	GWGCWC	2 cut(s)	57, 233
BbvI	GCAGC	3 cut(s)	121, 425, 610
BccI	CCATC	3 cut(s)	448, 607, 1004
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	191, 879
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	1041
BisI	GCNGC	6 cut(s)	6, 36, 39, 110, 414, 624
BlsI	GCNGC	6 cut(s)	7, 37, 40, 111, 415, 625
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	1 cut(s)	1049
BmiI	GGNNCC	2 cut(s)	406, 1078
BmsI	GCATC	2 cut(s)	699, 802
BpiI	GAAGAC	2 cut(s)	36, 66
BplI	GAGNNNNNCTC	2 cut(s)	973, 1005
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	110, 1000
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 401
Bse1I	ACTGG	2 cut(s)	395, 558
Bse3DI	GCAATG	2 cut(s)	408, 467
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	4 cut(s)	273, 817, 928, 948
BseLI	CCNNNNNNNGG	2 cut(s)	84, 401
BseMI	GCAATG	2 cut(s)	408, 467
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	395, 558
BseRI	GAGGAG	2 cut(s)	113, 1052
BseXI	GCAGC	3 cut(s)	121, 425, 610
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	3 cut(s)	35, 71, 1093
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	120, 149
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	57, 233
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	4 cut(s)	370, 581, 980, 995
BslI	CCNNNNNNNGG	2 cut(s)	84, 401
BsmAI	GTCTC	2 cut(s)	191, 879
BsmFI	GGGAC	4 cut(s)	370, 581, 980, 995
BsnI	GGCC	2 cut(s)	120, 149
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	57, 233
Bsp143I	GATC	5 cut(s)	59, 153, 204, 391, 1041
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	4 cut(s)	5, 35, 38, 715
BspANI	GGCC	2 cut(s)	120, 149
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	3 cut(s)	35, 71, 1093
BspLI	GGNNCC	2 cut(s)	406, 1078
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	2 cut(s)	221, 511
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	408, 467
BsrI	ACTGG	2 cut(s)	395, 558
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	5 cut(s)	59, 153, 204, 391, 1041
BssSI	CACGAG	2 cut(s)	143, 232
BssT1I	CCWWGG	1 cut(s)	952
Bst2BI	CACGAG	2 cut(s)	143, 232
Bst4CI	ACNGT	1 cut(s)	1072
Bst6I	CTCTTC	3 cut(s)	221, 511, 589
BstC8I	GCNNGC	5 cut(s)	132, 474, 757, 904, 973
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	952
BstF5I	GGATG	4 cut(s)	273, 817, 928, 948
BstFNI	CGCG	3 cut(s)	35, 71, 1093
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 1093
BstKTI	GATC	5 cut(s)	62, 156, 207, 394, 1044
BstMAI	GTCTC	2 cut(s)	191, 879
BstMBI	GATC	5 cut(s)	59, 153, 204, 391, 1041
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 422, 623
BstNSI	RCATGY	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	3 cut(s)	35, 71, 1093
BstV1I	GCAGC	3 cut(s)	121, 425, 610
BstV2I	GAAGAC	2 cut(s)	36, 66
BstX2I	RGATCY	1 cut(s)	1041
BstYI	RGATCY	1 cut(s)	1041
BsuRI	GGCC	2 cut(s)	120, 149
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	4 cut(s)	273, 817, 928, 948
Cac8I	GCNNGC	5 cut(s)	132, 474, 757, 904, 973
CfoI	GCGC	2 cut(s)	43, 1093
Cfr13I	GGNCC	1 cut(s)	1049
CseI	GACGC	3 cut(s)	41, 60, 977
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	4 cut(s)	220, 264, 363, 953
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	5 cut(s)	61, 155, 206, 393, 1043
DpnII	GATC	5 cut(s)	59, 153, 204, 391, 1041
Eam1104I	CTCTTC	3 cut(s)	221, 511, 589
EarI	CTCTTC	3 cut(s)	221, 511, 589
EciI	GGCGGA	1 cut(s)	730
Ecl136II	GAGCTC	2 cut(s)	55, 231
Eco130I	CCWWGG	1 cut(s)	952
Eco24I	GRGCYC	2 cut(s)	57, 233
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	1049
Eco53kI	GAGCTC	2 cut(s)	55, 231
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	2 cut(s)	55, 231
EcoRI	GAATTC	2 cut(s)	191, 886
EcoT14I	CCWWGG	1 cut(s)	952
EcoT38I	GRGCYC	2 cut(s)	57, 233
ErhI	CCWWGG	1 cut(s)	952
FaeI	CATG	4 cut(s)	223, 267, 366, 956
FaqI	GGGAC	4 cut(s)	370, 581, 980, 995
FatI	CATG	4 cut(s)	219, 263, 362, 952
Fnu4HI	GCNGC	6 cut(s)	6, 36, 39, 110, 414, 624
FokI	GGATG	4 cut(s)	280, 824, 935, 935
FriOI	GRGCYC	2 cut(s)	57, 233
Fsp4HI	GCNGC	6 cut(s)	6, 36, 39, 110, 414, 624
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	42, 1092
GluI	GCNGC	6 cut(s)	6, 36, 39, 110, 414, 624
GsuI	CTGGAG	1 cut(s)	575
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	120, 149
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	3 cut(s)	41, 60, 977
HhaI	GCGC	2 cut(s)	43, 1093
Hin1II	CATG	4 cut(s)	223, 267, 366, 956
Hin6I	GCGC	2 cut(s)	41, 1091
HinP1I	GCGC	2 cut(s)	41, 1091
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	5 cut(s)	18, 82, 683, 850, 1019
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	58, 500, 971
Hpy166II	GTNNAC	2 cut(s)	49, 160
Hpy188I	TCNGA	5 cut(s)	59, 87, 175, 331, 445
Hpy188III	TCNNGA	2 cut(s)	143, 196
Hpy8I	GTNNAC	2 cut(s)	49, 160
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	4, 274, 318, 597
HpyCH4III	ACNGT	1 cut(s)	1072
HpyCH4V	TGCA	7 cut(s)	413, 476, 548, 626, 707, 759, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 422, 623
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	223, 267, 366, 956
HspAI	GCGC	2 cut(s)	41, 1091
Kzo9I	GATC	5 cut(s)	59, 153, 204, 391, 1041
LguI	GCTCTTC	2 cut(s)	221, 511
LmnI	GCTCC	7 cut(s)	60, 87, 404, 457, 556, 652, 994
Lsp1109I	GCAGC	3 cut(s)	121, 425, 610
LweI	GCATC	2 cut(s)	699, 802
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	5 cut(s)	61, 155, 206, 393, 1043
MboI	GATC	5 cut(s)	59, 153, 204, 391, 1041
MboII	GAAGA	6 cut(s)	41, 66, 238, 498, 606, 859
MflI	RGATCY	1 cut(s)	1041
MhlI	GDGCHC	2 cut(s)	57, 233
MluCI	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1081
MlyI	GAGTC	2 cut(s)	76, 1013
MmeI	TCCRAC	3 cut(s)	198, 382, 900
MseI	TTAA	1 cut(s)	779
MslI	CAYNNNNRTG	1 cut(s)	957
MspA1I	CMGCKG	2 cut(s)	317, 416
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	3 cut(s)	35, 71, 1093
MwoI	GCNNNNNNNGC	3 cut(s)	413, 422, 623
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	5 cut(s)	59, 153, 204, 391, 1041
NlaIII	CATG	4 cut(s)	223, 267, 366, 956
NlaIV	GGNNCC	2 cut(s)	406, 1078
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	1 cut(s)	223
PciSI	GCTCTTC	2 cut(s)	221, 511
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	18, 683, 850
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	6 cut(s)	7, 37, 40, 111, 415, 625
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	2 cut(s)	76, 1013
PpsI	GAGTC	2 cut(s)	76, 1013
Psp124BI	GAGCTC	2 cut(s)	57, 233
PspN4I	GGNNCC	2 cut(s)	406, 1078
PspPI	GGNCC	1 cut(s)	1049
PsuI	RGATCY	1 cut(s)	1041
PvuI	CGATCG	1 cut(s)	62
PvuII	CAGCTG	2 cut(s)	317, 416
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	957
SacI	GAGCTC	2 cut(s)	57, 233
SapI	GCTCTTC	2 cut(s)	221, 511
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	6 cut(s)	6, 36, 39, 110, 414, 624
Sau3AI	GATC	5 cut(s)	59, 153, 204, 391, 1041
Sau96I	GGNCC	1 cut(s)	1049
SchI	GAGTC	2 cut(s)	76, 1013
SduI	GDGCHC	2 cut(s)	57, 233
SfaNI	GCATC	2 cut(s)	699, 802
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	1049
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	2 cut(s)	125, 979
SmoI	CTYRAG	2 cut(s)	125, 979
Sse9I	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1081
SsiI	CCGC	4 cut(s)	5, 35, 38, 715
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	2 cut(s)	57, 233
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	1 cut(s)	1072
TaqI	TCGA	4 cut(s)	21, 62, 195, 1005
TasI	AATT	9 cut(s)	191, 239, 354, 367, 720, 803, 827, 886, 1081
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	3 cut(s)	8, 38, 41
TfiI	GAWTC	3 cut(s)	18, 683, 850
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TseI	GCWGC	3 cut(s)	109, 413, 623
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	3 cut(s)	39, 606, 1041
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	191, 886
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.