Rh6AG371500

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002296
Physical Location & Seq
Forward (+)
56991428 .. 57003236
11809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG371500.1

Sequence Viewer

Length: 1242 bp
ATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCGTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGTGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTCCTTTTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCGTTTCCCCTGATTACATTTTAACAACAAAGGATTTTGCTTCTAAATTGGTGGATGCCTTGAAAAGTGAATTGGAGAACTTCTATGGGAAGAATCCACTACAATCAAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGACGAGGATAAGGTTTCTGGTAAGGTCATCCATGGAGGTGATAGGGACACAAGCAACTTGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAAGACTCCCTGATTATGCAGGAGGAGATCTTTGGTCCGTTGCTTCCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAACCTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCACTTCGTAAGGAATATATCTGCAGGAGGTTTGGTTATCAACGACACTACCATTCATCTTGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTATCGAGGTTTTTCTGGAGATGCTTCTGTGAGGTACCCTCCATACACAAAGGGGAAGCTAAGACTTCTAAAGGCTCTGGTCGGTGGTAGTCTATTGGGCATAATCCGCGCTCTATTTGGATGGTCTAAGGCTTAA

Protein Analysis

413

Amino Acids

44.46

Weight (kDa)

9.24

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 30 - 368 8.2e-77 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1140
AccB1I GGYRCC 1 cut(s) 1140
AccB7I CCANNNNNTGG 1 cut(s) 182
AccII CGCG 1 cut(s) 1215
AciI CCGC 3 cut(s) 496, 902, 1213
AclWI GGATC 2 cut(s) 167, 951
AcsI RAATTY 2 cut(s) 667, 1067
AcuI CTGAAG 3 cut(s) 59, 959, 1069
AfaI GTAC 2 cut(s) 129, 1142
AfiI CCNNNNNNNGG 2 cut(s) 182, 1028
AgsI TTSAA 4 cut(s) 7, 75, 601, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 2 cut(s) 167, 951
AlwNI CAGNNNCTG 1 cut(s) 937
ApeKI GCWGC 3 cut(s) 194, 404, 908
ApoI RAATTY 2 cut(s) 667, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp718I GGTACC 1 cut(s) 1140
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 1 cut(s) 830
AsuHPI GGTGA 2 cut(s) 281, 752
AvaII GGWCC 1 cut(s) 830
AxyI CCTNAGG 1 cut(s) 889
BanI GGYRCC 1 cut(s) 1140
BanII GRGCYC 1 cut(s) 14
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 206, 391, 895
BccI CCATC 4 cut(s) 229, 388, 785, 1221
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 2 cut(s) 207, 966
BglII AGATCT 1 cut(s) 822
BisI GCNGC 4 cut(s) 195, 405, 902, 909
BlsI GCNGC 4 cut(s) 196, 406, 903, 910
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 2 cut(s) 187, 1142
BmsI GCATC 3 cut(s) 480, 583, 1117
BpiI GAAGAC 1 cut(s) 873
BplI GAGNNNNNCTC 4 cut(s) 754, 786, 1129, 1161
BpmI CTGGAG 2 cut(s) 356, 1143
BpuEI CTTGAG 1 cut(s) 781
BsaJI CCNNGG 2 cut(s) 733, 1060
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 963, 993
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 1028
Bse1I ACTGG 2 cut(s) 176, 339
Bse21I CCTNAGG 1 cut(s) 889
Bse3DI GCAATG 2 cut(s) 189, 248
BseDI CCNNGG 2 cut(s) 733, 1060
BseGI GGATG 4 cut(s) 54, 598, 729, 1232
BseLI CCNNNNNNNGG 2 cut(s) 182, 1028
BseMI GCAATG 2 cut(s) 189, 248
BseMII CTCAG 2 cut(s) 102, 903
BseNI ACTGG 2 cut(s) 176, 339
BseRI GAGGAG 2 cut(s) 833, 1044
BseXI GCAGC 3 cut(s) 206, 391, 895
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 1215
BshNI GGYRCC 1 cut(s) 1140
BsiHKAI GWGCWC 1 cut(s) 14
BslFI GGGAC 4 cut(s) 151, 362, 761, 776
BslI CCNNNNNNNGG 2 cut(s) 182, 1028
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 4 cut(s) 151, 362, 761, 776
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 172, 822, 943
Bsp19I CCATGG 2 cut(s) 733, 1060
BspACI CCGC 3 cut(s) 496, 902, 1213
BspCNI CTCAG 2 cut(s) 103, 902
BspFNI CGCG 1 cut(s) 1215
BspLI GGNNCC 2 cut(s) 187, 1142
BspMAI CTGCAG 1 cut(s) 970
BspPI GGATC 2 cut(s) 167, 951
BspQI GCTCTTC 2 cut(s) 2, 292
BspT107I GGYRCC 1 cut(s) 1140
BsrDI GCAATG 2 cut(s) 189, 248
BsrI ACTGG 2 cut(s) 176, 339
BssECI CCNNGG 2 cut(s) 733, 1060
BssMI GATC 3 cut(s) 172, 822, 943
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 733, 1060
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 853
Bst6I CTCTTC 3 cut(s) 2, 292, 370
BstC8I GCNNGC 4 cut(s) 255, 538, 685, 906
BstDEI CTNAG 4 cut(s) 111, 889, 1166, 1233
BstDSI CCRYGG 2 cut(s) 733, 1060
BstF5I GGATG 4 cut(s) 54, 598, 729, 1232
BstFNI CGCG 1 cut(s) 1215
BstHHI GCGC 1 cut(s) 1217
BstKTI GATC 3 cut(s) 175, 825, 946
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 3 cut(s) 172, 822, 943
BstMWI GCNNNNNNNGC 4 cut(s) 194, 203, 404, 1212
BstSFI CTRYAG 2 cut(s) 207, 966
BstUI CGCG 1 cut(s) 1215
BstV1I GCAGC 3 cut(s) 206, 391, 895
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
Bsu36I CCTNAGG 1 cut(s) 889
BtgI CCRYGG 2 cut(s) 733, 1060
BtsCI GGATG 4 cut(s) 54, 598, 729, 1232
Cac8I GCNNGC 4 cut(s) 255, 538, 685, 906
CaiI CAGNNNCTG 1 cut(s) 937
CfoI GCGC 1 cut(s) 1217
Cfr13I GGNCC 1 cut(s) 830
Csp6I GTAC 2 cut(s) 128, 1141
CviAII CATG 4 cut(s) 45, 144, 734, 1061
CviQI GTAC 2 cut(s) 128, 1141
DdeI CTNAG 4 cut(s) 111, 889, 1166, 1233
DpnI GATC 3 cut(s) 174, 824, 945
DpnII GATC 3 cut(s) 172, 822, 943
Eam1104I CTCTTC 3 cut(s) 2, 292, 370
EarI CTCTTC 3 cut(s) 2, 292, 370
EciI GGCGGA 1 cut(s) 511
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 733, 1060
Eco24I GRGCYC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 830
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 3 cut(s) 59, 959, 1069
Eco81I CCTNAGG 1 cut(s) 889
EcoICRI GAGCTC 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 733, 1060
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 2 cut(s) 733, 1060
FaeI CATG 4 cut(s) 48, 147, 737, 1064
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FaqI GGGAC 4 cut(s) 151, 362, 761, 776
FatI CATG 4 cut(s) 44, 143, 733, 1060
Fnu4HI GCNGC 4 cut(s) 195, 405, 902, 909
FokI GGATG 3 cut(s) 61, 605, 716
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 195, 405, 902, 909
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 1216
GluI GCNGC 4 cut(s) 195, 405, 902, 909
GsuI CTGGAG 2 cut(s) 356, 1143
HhaI GCGC 1 cut(s) 1217
Hin1II CATG 4 cut(s) 48, 147, 737, 1064
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 3 cut(s) 464, 631, 800
HphI GGTGA 2 cut(s) 281, 752
Hpy166II GTNNAC 2 cut(s) 856, 921
Hpy188I TCNGA 2 cut(s) 112, 226
Hpy188III TCNNGA 2 cut(s) 891, 1122
Hpy8I GTNNAC 2 cut(s) 856, 921
HpyAV CCTTC 5 cut(s) 55, 99, 378, 934, 1093
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4V TGCA 9 cut(s) 194, 257, 329, 407, 488, 814, 911, 968, 1055
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 203, 404, 1212
HpyF3I CTNAG 4 cut(s) 111, 889, 1166, 1233
Hsp92II CATG 4 cut(s) 48, 147, 737, 1064
HspAI GCGC 1 cut(s) 1215
KpnI GGTACC 1 cut(s) 1144
Kzo9I GATC 3 cut(s) 172, 822, 943
LguI GCTCTTC 2 cut(s) 2, 292
LmnI GCTCC 5 cut(s) 185, 238, 337, 433, 775
Lsp1109I GCAGC 3 cut(s) 206, 391, 895
LweI GCATC 3 cut(s) 480, 583, 1117
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 174, 824, 945
MboI GATC 3 cut(s) 172, 822, 943
MboII GAAGA 5 cut(s) 19, 279, 387, 640, 878
MflI RGATCY 1 cut(s) 822
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 8 cut(s) 20, 135, 148, 501, 584, 608, 667, 1067
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 2 cut(s) 163, 681
MseI TTAA 2 cut(s) 560, 1240
MslI CAYNNNNRTG 1 cut(s) 738
MspA1I CMGCKG 2 cut(s) 98, 197
MvnI CGCG 1 cut(s) 1215
MwoI GCNNNNNNNGC 4 cut(s) 194, 203, 404, 1212
NcoI CCATGG 2 cut(s) 733, 1060
NdeII GATC 3 cut(s) 172, 822, 943
NlaIII CATG 4 cut(s) 48, 147, 737, 1064
NlaIV GGNNCC 2 cut(s) 187, 1142
PciSI GCTCTTC 2 cut(s) 2, 292
PfeI GAWTC 2 cut(s) 464, 631
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 4 cut(s) 196, 406, 903, 910
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 187, 1142
PspPI GGNCC 1 cut(s) 830
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 937
PsuI RGATCY 1 cut(s) 822
PvuII CAGCTG 2 cut(s) 98, 197
RsaI GTAC 2 cut(s) 129, 1142
RsaNI GTAC 2 cut(s) 128, 1141
RseI CAYNNNNRTG 1 cut(s) 738
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 2 cut(s) 2, 292
SaqAI TTAA 2 cut(s) 560, 1240
SatI GCNGC 4 cut(s) 195, 405, 902, 909
Sau3AI GATC 3 cut(s) 172, 822, 943
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 1 cut(s) 794
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 3 cut(s) 480, 583, 1117
SfcI CTRYAG 2 cut(s) 207, 966
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
Sse9I AATT 8 cut(s) 20, 135, 148, 501, 584, 608, 667, 1067
SsiI CCGC 3 cut(s) 496, 902, 1213
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 14
StyI CCWWGG 2 cut(s) 733, 1060
TaaI ACNGT 1 cut(s) 853
TaqI TCGA 2 cut(s) 786, 1111
TasI AATT 8 cut(s) 20, 135, 148, 501, 584, 608, 667, 1067
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 2 cut(s) 464, 631
Tru1I TTAA 2 cut(s) 560, 1240
Tru9I TTAA 2 cut(s) 560, 1240
TseI GCWGC 3 cut(s) 194, 404, 908
TspDTI ATGAA 2 cut(s) 65, 989
TspGWI ACGGA 2 cut(s) 387, 822
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 667, 1067
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.