Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328491.1

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 921

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

gctgttgctgaaacatctgccctattggagcagaagtgggacaaaatatgttacacaggcaacgcaagagtgggaaggattgtgatggctagtgctgcaaagcaccttacacctgttcttttggagcttggaggaaaatctcctgttgttgttgattctggcattaacttacaagtcgcaagtaggcggataattgtaggaaagtgggggtgtaataatggacaggcttgtatttcccctgattacattataacaacaaaagattttgcttctaaattggtggatgccatgaaaagtgaattggatagcttttatgggaagaatccgctacagtcaaaagatctgtctcgtatagtgaattataatcactatgctcgcttgacaaatctgttggatgaggataaggtttctgggaaggtcatccatggaggtgaaagggacacgagcaacttgaggatagctcccaccatcttactcgatgtcccacaagactccctgatgatgcaggaggagatctttggtcccttgctgcctattatcacggttgacaagatagaagacagctttgatttgataaactcaggaacaaagccgcttgctgcatatttgtttaccaacagccagaagctgaaggatcagtttgtaaggaatatctctgcaggaggtatggttatcaatgacactaccattcatctcgctgttccctccttgccatttggaggagttggggaaagtggaatgggtgcataccatgggaaattctcttttgaagccttcagccataagaaagcagttgtttgtcgaggttttttgggagatgcttctctgaggtaccctccatacacggaggggaagctaagtgttctaaaggctctggtcggtggtgatagtatagtggacataatccgctctctgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

306

Amino Acids

33.22

Weight (kDa)

7.83

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	251, 363
Acc65I	GGTACC	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	831
AccBSI	CCGCTC	1 cut(s)	909
AciI	CCGC	4 cut(s)	187, 326, 593, 907
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	650, 760
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	6 cut(s)	127, 309, 461, 564, 628, 856
AluI	AGCT	6 cut(s)	127, 309, 461, 564, 628, 856
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	95, 529, 599
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp718I	GGTACC	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	443, 896
AvaII	GGWCC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	831
BauI	CACGAG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	82, 516, 586
BccI	CCATC	2 cut(s)	79, 476
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	329, 657
BglII	AGATCT	2 cut(s)	340, 513
BisI	GCNGC	4 cut(s)	96, 530, 593, 600
BlsI	GCNGC	4 cut(s)	97, 531, 594, 601
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	523, 833
BmsI	GCATC	3 cut(s)	274, 492, 808
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	4 cut(s)	445, 477, 820, 852
BpuEI	CTTGAG	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	424, 751
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 654, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	424, 751
BseGI	GGATG	3 cut(s)	289, 400, 420
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	594, 818
BseRI	GAGGAG	2 cut(s)	524, 735
BseXI	GCAGC	3 cut(s)	82, 516, 586
BshNI	GGYRCC	1 cut(s)	831
BslFI	GGGAC	4 cut(s)	53, 452, 467, 507
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	4 cut(s)	53, 452, 467, 507
Bsp143I	GATC	3 cut(s)	340, 513, 634
Bsp19I	CCATGG	2 cut(s)	424, 751
BspACI	CCGC	4 cut(s)	187, 326, 593, 907
BspCNI	CTCAG	2 cut(s)	593, 819
BspLI	GGNNCC	2 cut(s)	523, 833
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	831
BsrBI	CCGCTC	1 cut(s)	909
BssECI	CCNNGG	2 cut(s)	424, 751
BssMI	GATC	3 cut(s)	340, 513, 634
BssSI	CACGAG	1 cut(s)	442
BssT1I	CCWWGG	2 cut(s)	424, 751
Bst2BI	CACGAG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	333, 544
BstC8I	GCNNGC	2 cut(s)	376, 597
BstDEI	CTNAG	3 cut(s)	580, 827, 857
BstDSI	CCRYGG	2 cut(s)	424, 751
BstF5I	GGATG	3 cut(s)	289, 400, 420
BstKTI	GATC	3 cut(s)	343, 516, 637
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	3 cut(s)	340, 513, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	329, 657
BstV1I	GCAGC	3 cut(s)	82, 516, 586
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	340, 513
BstYI	RGATCY	2 cut(s)	340, 513
BtgI	CCRYGG	2 cut(s)	424, 751
BtsCI	GGATG	3 cut(s)	289, 400, 420
Cac8I	GCNNGC	2 cut(s)	376, 597
CaiI	CAGNNNCTG	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	3 cut(s)	289, 425, 752
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	3 cut(s)	580, 827, 857
DpnI	GATC	3 cut(s)	342, 515, 636
DpnII	GATC	3 cut(s)	340, 513, 634
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	424, 751
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	650, 760
EcoT14I	CCWWGG	2 cut(s)	424, 751
ErhI	CCWWGG	2 cut(s)	424, 751
FaeI	CATG	3 cut(s)	292, 428, 755
FaqI	GGGAC	4 cut(s)	53, 452, 467, 507
FatI	CATG	3 cut(s)	288, 424, 751
Fnu4HI	GCNGC	4 cut(s)	96, 530, 593, 600
FokI	GGATG	3 cut(s)	296, 407, 407
Fsp4HI	GCNGC	4 cut(s)	96, 530, 593, 600
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	4 cut(s)	96, 530, 593, 600
Hin1II	CATG	3 cut(s)	292, 428, 755
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	3 cut(s)	155, 322, 491
HphI	GGTGA	2 cut(s)	443, 896
Hpy166II	GTNNAC	3 cut(s)	547, 612, 898
Hpy188I	TCNGA	2 cut(s)	828, 920
Hpy188III	TCNNGA	1 cut(s)	582
Hpy8I	GTNNAC	3 cut(s)	547, 612, 898
HpyAV	CCTTC	4 cut(s)	69, 409, 625, 784
HpyCH4III	ACNGT	2 cut(s)	333, 544
HpyCH4V	TGCA	5 cut(s)	98, 505, 602, 659, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	580, 827, 857
Hsp92II	CATG	3 cut(s)	292, 428, 755
KpnI	GGTACC	1 cut(s)	835
Kzo9I	GATC	3 cut(s)	340, 513, 634
LmnI	GCTCC	3 cut(s)	28, 124, 466
Lsp1109I	GCAGC	3 cut(s)	82, 516, 586
LweI	GCATC	3 cut(s)	274, 492, 808
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	342, 515, 636
MbiI	CCGCTC	1 cut(s)	909
MboI	GATC	3 cut(s)	340, 513, 634
MboII	GAAGA	2 cut(s)	331, 569
MflI	RGATCY	2 cut(s)	340, 513
MluCI	AATT	5 cut(s)	192, 275, 299, 358, 758
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	2 cut(s)	424, 751
NdeII	GATC	3 cut(s)	340, 513, 634
NlaIII	CATG	3 cut(s)	292, 428, 755
NlaIV	GGNNCC	2 cut(s)	523, 833
PfeI	GAWTC	2 cut(s)	155, 322
PkrI	GCNGC	4 cut(s)	97, 531, 594, 601
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PsiI	TTATAA	2 cut(s)	251, 363
PspN4I	GGNNCC	2 cut(s)	523, 833
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	340, 513
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	96, 530, 593, 600
Sau3AI	GATC	3 cut(s)	340, 513, 634
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	274, 492, 808
SfcI	CTRYAG	2 cut(s)	329, 657
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	5 cut(s)	192, 275, 299, 358, 758
SsiI	CCGC	4 cut(s)	187, 326, 593, 907
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	424, 751
TaaI	ACNGT	2 cut(s)	333, 544
TaqI	TCGA	2 cut(s)	477, 802
TasI	AATT	5 cut(s)	192, 275, 299, 358, 758
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	155, 322
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	3 cut(s)	95, 529, 599
TspDTI	ATGAA	2 cut(s)	305, 680
TspGWI	ACGGA	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	758
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.