Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Reverse (-)

40578958 .. 40589270

Gene Structure 10313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1345700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGAGAGATTCAAACAAGACACACATCACTTGTAACCTTGTTTTTGTTTCTTGCCTCAGGATGTATTTTGATTCGAAAGATGCGTTGGCCATGGTTGAGGAGCTGAGGGCCAGTTATAATTCCGGCAAGACGAGAAGCTATGAGTGGAGGGTGTCGCAGCTGAAGAACCTCGTGAAGGTGGCGGAGCACCACGAACAAGAGATCGTCGATGCTCTTCGCTCTGACCTCTCTAAACCTGAATTTGAAGCCTACGTTCATGAGATATCTATGTTAAATAACTCGTGTAAATTGGCAATTAAGGAGCTGAAGAAATGGATGAAGCCAGAAAAGGTTAAAACTTCGATAGCAGTTTTTCCTGCATCAGCTGAAATAGTGTCTGAACCGCTTGGTGCTATACTAGTAATTTCAGCATGGAATTATCCTTTCTTACTGTCACTTGATCCAGTTGTTGGAGCCATTGCGTCTGGTAATGTTGTGGTTCTTAAACCATCAGAACTTGCTCCAGCCACATCGTCATTGCTTGCAAAACTATTAGGTGAATATATGGATAGCTCTTGTATAAGAGTCGTTGAGGGGGCTGTTGCTGAAACATCTGCACTGTTAGAGCAAAAGTGGGATAAAATATGTTACACAGGAAATGGAAGAGTGGGACGTATAGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTTCTATTGGAGCTTGGAGGAAAATCTCCCGTTATTGTTGATTCTGGCATTAACTTACAAGTTGCTTGTAGGCGAATAATCGTTGGTAAGTGGGGGTGTAATAATGGACAGGCTTGCATCTCCCCTGATTATATCATAACAACAAAAGATTTTGCTCCTAAGCTGGTGGATTCTCTGAAACAAGAATTGGAGAACTTCTATGGAAAGAATCAACTAGAATCAAAAGATTTATCTCGTATTGTGAATCCTCATCACTTTGCTCGCTTGACGAAGCTTTTGGATGAGGATAAGGTTTCTGGAAAGATCGTCCATGGAGGTGAAACGGACAAAACCAACTTGAGGATAGCTCCCACCATCTTGCTCGATGTTCCACAAGACTCTTTGATCATGAGTGAGGAAATATTTGGCCCTTTGCTGCCCATTCTCACGGTCGAAAAAATGGAAGACAGTTTTGATTTGATAAACTCAGGAACAAAGCCTCTTGCTGCGTATTTGTTTACCAACAAGAAGAAGCTGAAGGAGCACTTTGTAAATACTGTCTCTGCCGGTGGTTTGGTTGTCAATGACACTACCATACATCTTGCTGTTCCCTCCTTGCCTTTTGGAGGAGTTGGGGAAAGCGGAATGGGTGCGTACCATGGAAAATTCTCTTTCGACGCTTTTAGCCATAAGAAGGCAGTTGTTTATCGAGGTTTCTTCGGTGATGCTTCCATAAGATACCCACCATACACAAAGGGGAAGCTAAGAATTCTGAAGGCTCTTATCAGCGGTGGCATATCAAGCATAATCCGTGCTCTGTTCGGATGGCCTAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

503

Amino Acids

55.11

Weight (kDa)

8.77

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	24 - 457	1.6e-82	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	4 cut(s)	182, 383, 1311, 1458
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	3 cut(s)	239, 1334, 1437
AcuI	CTGAAG	4 cut(s)	182, 326, 1226, 1463
AfaI	GTAC	1 cut(s)	1325
AfiI	CCNNNNNNNGG	5 cut(s)	175, 449, 1029, 1295, 1363
AgsI	TTSAA	2 cut(s)	12, 245
AhlI	ACTAGT	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 860, 892
Alw21I	GWGCWC	3 cut(s)	189, 1215, 1486
Alw26I	GTCTC	1 cut(s)	1234
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	4 cut(s)	87, 108, 1096, 1496
ApeKI	GCWGC	4 cut(s)	157, 671, 1105, 1175
ApoI	RAATTY	3 cut(s)	239, 1334, 1437
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
AspS9I	GGNCC	2 cut(s)	108, 1097
AsuHPI	GGTGA	3 cut(s)	548, 1019, 1403
AsuII	TTCGAA	1 cut(s)	74
AxyI	CCTNAGG	2 cut(s)	56, 1500
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	2 cut(s)	170, 280
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	3 cut(s)	189, 1215, 1486
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	169, 658, 1092, 1162
BccI	CCATC	4 cut(s)	496, 655, 1052, 1488
BclI	TGATCA	1 cut(s)	1074
BcoDI	GTCTC	1 cut(s)	1234
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	3 cut(s)	398, 666, 905
BisI	GCNGC	4 cut(s)	158, 672, 1106, 1176
BlsI	GCNGC	4 cut(s)	159, 673, 1107, 1177
BmgT120I	GGNCC	2 cut(s)	108, 1097
BmiI	GGNNCC	1 cut(s)	454
BmsI	GCATC	5 cut(s)	70, 199, 368, 816, 1384
BpiI	GAAGAC	1 cut(s)	1140
BplI	GAGNNNNNCTC	2 cut(s)	1021, 1053
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	104, 849
Bpu14I	TTCGAA	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	1048
BsaJI	CCNNGG	3 cut(s)	90, 1000, 1327
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 449, 1029, 1295, 1363
Bse118I	RCCGGY	1 cut(s)	1235
Bse1I	ACTGG	2 cut(s)	111, 443
Bse21I	CCTNAGG	2 cut(s)	56, 1500
Bse3DI	GCAATG	2 cut(s)	456, 515
BseDI	CCNNGG	3 cut(s)	90, 1000, 1327
BseGI	GGATG	4 cut(s)	66, 321, 976, 1499
BseLI	CCNNNNNNNGG	5 cut(s)	175, 449, 1029, 1295, 1363
BseMI	GCAATG	2 cut(s)	456, 515
BseMII	CTCAG	3 cut(s)	70, 95, 1170
BseNI	ACTGG	2 cut(s)	111, 443
BseRI	GAGGAG	2 cut(s)	113, 1311
BseXI	GCAGC	4 cut(s)	169, 658, 1092, 1162
BsgI	GTGCAG	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	1122
BshFI	GGCC	4 cut(s)	89, 110, 1098, 1498
BsiEI	CGRYCG	1 cut(s)	1122
BsiHKAI	GWGCWC	3 cut(s)	189, 1215, 1486
BsiSI	CCGG	2 cut(s)	123, 1236
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	5 cut(s)	175, 449, 1029, 1295, 1363
BsmAI	GTCTC	1 cut(s)	1234
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	89, 110, 1098, 1498
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	189, 1215, 1486
Bsp143I	GATC	4 cut(s)	201, 439, 993, 1074
Bsp19I	CCATGG	3 cut(s)	90, 1000, 1327
BspACI	CCGC	4 cut(s)	182, 383, 1311, 1458
BspANI	GGCC	4 cut(s)	89, 110, 1098, 1498
BspCNI	CTCAG	3 cut(s)	69, 96, 1169
BspHI	TCATGA	2 cut(s)	256, 1077
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	456, 515
BsrFI	RCCGGY	1 cut(s)	1235
BsrI	ACTGG	2 cut(s)	111, 443
BssAI	RCCGGY	1 cut(s)	1235
BssECI	CCNNGG	3 cut(s)	90, 1000, 1327
BssMI	GATC	4 cut(s)	201, 439, 993, 1074
BssSI	CACGAG	2 cut(s)	170, 280
BssT1I	CCWWGG	3 cut(s)	90, 1000, 1327
Bst2BI	CACGAG	2 cut(s)	170, 280
Bst4CI	ACNGT	5 cut(s)	432, 600, 1120, 1139, 1228
Bst6I	CTCTTC	2 cut(s)	219, 637
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	522, 805, 952
BstDEI	CTNAG	6 cut(s)	56, 104, 849, 1156, 1433, 1500
BstDSI	CCRYGG	3 cut(s)	90, 1000, 1327
BstENI	CCTNNNNNAGG	2 cut(s)	173, 1293
BstF5I	GGATG	4 cut(s)	66, 321, 976, 1499
BstKTI	GATC	4 cut(s)	204, 442, 996, 1077
BstMAI	GTCTC	1 cut(s)	1234
BstMBI	GATC	4 cut(s)	201, 439, 993, 1074
BstMCI	CGRYCG	1 cut(s)	1122
BstMWI	GCNNNNNNNGC	3 cut(s)	671, 1210, 1470
BstV1I	GCAGC	4 cut(s)	169, 658, 1092, 1162
BstV2I	GAAGAC	1 cut(s)	1140
Bsu36I	CCTNAGG	2 cut(s)	56, 1500
BsuRI	GGCC	4 cut(s)	89, 110, 1098, 1498
BtgI	CCRYGG	3 cut(s)	90, 1000, 1327
BtsCI	GGATG	4 cut(s)	66, 321, 976, 1499
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	522, 805, 952
CciI	TCATGA	2 cut(s)	256, 1077
Cfr10I	RCCGGY	1 cut(s)	1235
Cfr13I	GGNCC	2 cut(s)	108, 1097
CseI	GACGC	2 cut(s)	450, 1355
Csp6I	GTAC	1 cut(s)	1324
CviAII	CATG	6 cut(s)	91, 257, 411, 1001, 1078, 1328
CviQI	GTAC	1 cut(s)	1324
DdeI	CTNAG	6 cut(s)	56, 104, 849, 1156, 1433, 1500
DpnI	GATC	4 cut(s)	203, 441, 995, 1076
DpnII	GATC	4 cut(s)	201, 439, 993, 1074
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	219, 637
EarI	CTCTTC	2 cut(s)	219, 637
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	3 cut(s)	90, 1000, 1327
Eco32I	GATATC	1 cut(s)	264
Eco57I	CTGAAG	4 cut(s)	182, 326, 1226, 1463
Eco81I	CCTNAGG	2 cut(s)	56, 1500
EcoNI	CCTNNNNNAGG	2 cut(s)	173, 1293
EcoRI	GAATTC	1 cut(s)	1437
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	3 cut(s)	90, 1000, 1327
ErhI	CCWWGG	3 cut(s)	90, 1000, 1327
FaeI	CATG	6 cut(s)	94, 260, 414, 1004, 1081, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1199, 1231
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	6 cut(s)	90, 256, 410, 1000, 1077, 1327
FbaI	TGATCA	1 cut(s)	1074
Fnu4HI	GCNGC	4 cut(s)	158, 672, 1106, 1176
FokI	GGATG	3 cut(s)	73, 328, 983
Fsp4HI	GCNGC	4 cut(s)	158, 672, 1106, 1176
FspBI	CTAG	3 cut(s)	398, 666, 905
GluI	GCNGC	4 cut(s)	158, 672, 1106, 1176
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	89, 110, 1098, 1498
HapII	CCGG	2 cut(s)	123, 1236
HgaI	GACGC	2 cut(s)	450, 1355
Hin1II	CATG	6 cut(s)	94, 260, 414, 1004, 1081, 1331
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	9 cut(s)	8, 71, 564, 731, 860, 898, 908, 934, 1067
HpaII	CCGG	2 cut(s)	123, 1236
HphI	GGTGA	3 cut(s)	548, 1019, 1403
Hpy166II	GTNNAC	1 cut(s)	1188
Hpy188I	TCNGA	6 cut(s)	223, 379, 493, 867, 1443, 1493
Hpy188III	TCNNGA	6 cut(s)	58, 172, 257, 987, 1078, 1158
Hpy8I	GTNNAC	1 cut(s)	1188
Hpy99I	CGWCG	2 cut(s)	209, 1349
HpyAV	CCTTC	4 cut(s)	169, 1201, 1357, 1438
HpyCH4III	ACNGT	5 cut(s)	432, 600, 1120, 1139, 1228
HpyCH4IV	ACGT	2 cut(s)	252, 652
HpyCH4V	TGCA	5 cut(s)	359, 524, 596, 674, 807
HpyF10VI	GCNNNNNNNGC	3 cut(s)	671, 1210, 1470
HpyF3I	CTNAG	6 cut(s)	56, 104, 849, 1156, 1433, 1500
HpySE526I	ACGT	2 cut(s)	252, 652
Hsp92II	CATG	6 cut(s)	94, 260, 414, 1004, 1081, 1331
Ksp22I	TGATCA	1 cut(s)	1074
Kzo9I	GATC	4 cut(s)	201, 439, 993, 1074
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	9 cut(s)	100, 184, 301, 452, 505, 700, 850, 1042, 1210
Lsp1109I	GCAGC	4 cut(s)	169, 658, 1092, 1162
LweI	GCATC	5 cut(s)	70, 199, 368, 816, 1384
MaeI	CTAG	3 cut(s)	398, 666, 905
MaeII	ACGT	2 cut(s)	252, 652
MaeIII	GTNAC	3 cut(s)	32, 432, 626
MalI	GATC	4 cut(s)	203, 441, 995, 1076
MboI	GATC	4 cut(s)	201, 439, 993, 1074
MboII	GAAGA	7 cut(s)	175, 206, 319, 654, 1145, 1210, 1378
MhlI	GDGCHC	3 cut(s)	189, 1215, 1486
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	9 cut(s)	118, 239, 287, 294, 402, 415, 875, 1334, 1437
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	573, 1061
MmeI	TCCRAC	1 cut(s)	430
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	6 cut(s)	272, 297, 333, 483, 741, 1507
MslI	CAYNNNNRTG	1 cut(s)	1005
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	3 cut(s)	160, 365, 1458
MspI	CCGG	2 cut(s)	123, 1236
MwoI	GCNNNNNNNGC	3 cut(s)	671, 1210, 1470
NcoI	CCATGG	3 cut(s)	90, 1000, 1327
NdeII	GATC	4 cut(s)	201, 439, 993, 1074
NlaIII	CATG	6 cut(s)	94, 260, 414, 1004, 1081, 1331
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	74
PagI	TCATGA	2 cut(s)	256, 1077
PciSI	GCTCTTC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	7 cut(s)	8, 71, 731, 860, 898, 908, 934
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	159, 673, 1107, 1177
PleI	GAGTC	2 cut(s)	572, 1061
PpsI	GAGTC	2 cut(s)	572, 1061
PsiI	TTATAA	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	108, 1097
PvuII	CAGCTG	2 cut(s)	160, 365
RsaI	GTAC	1 cut(s)	1325
RsaNI	GTAC	1 cut(s)	1324
RseI	CAYNNNNRTG	1 cut(s)	1005
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	6 cut(s)	272, 297, 333, 483, 741, 1507
SatI	GCNGC	4 cut(s)	158, 672, 1106, 1176
Sau3AI	GATC	4 cut(s)	201, 439, 993, 1074
Sau96I	GGNCC	2 cut(s)	108, 1097
SchI	GAGTC	2 cut(s)	573, 1061
SduI	GDGCHC	3 cut(s)	189, 1215, 1486
SfaNI	GCATC	5 cut(s)	70, 199, 368, 816, 1384
SfuI	TTCGAA	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	1005
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	9 cut(s)	118, 239, 287, 294, 402, 415, 875, 1334, 1437
SsiI	CCGC	4 cut(s)	182, 383, 1311, 1458
SspI	AATATT	1 cut(s)	1092
SspMI	CTAG	3 cut(s)	398, 666, 905
StyI	CCWWGG	3 cut(s)	90, 1000, 1327
TaaI	ACNGT	5 cut(s)	432, 600, 1120, 1139, 1228
TaiI	ACGT	2 cut(s)	255, 655
TaqI	TCGA	7 cut(s)	74, 207, 341, 1053, 1122, 1344, 1378
TasI	AATT	9 cut(s)	118, 239, 287, 294, 402, 415, 875, 1334, 1437
TfiI	GAWTC	7 cut(s)	8, 71, 731, 860, 898, 908, 934
Tru1I	TTAA	6 cut(s)	272, 297, 333, 483, 741, 1507
Tru9I	TTAA	6 cut(s)	272, 297, 333, 483, 741, 1507
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	4 cut(s)	157, 671, 1105, 1175
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	2 cut(s)	245, 332
TspGWI	ACGGA	2 cut(s)	1028, 1469
TspRI	CASTG	1 cut(s)	603
Van91I	CCANNNNNTGG	1 cut(s)	449
XagI	CCTNNNNNAGG	2 cut(s)	173, 1293
XapI	RAATTY	3 cut(s)	239, 1334, 1437
XspI	CTAG	3 cut(s)	398, 666, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.