Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002296

Physical Location & Seq

Genomic Coordinates Reverse (-)

12616335 .. 12620880

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGTTCGGGGAAGCCTTTCGACGAAGAAGCCGCCTCTGCTGTGGCCAAGGAGCTGAGAGCGACCTTCGCCTCCGGCAAGACTCGGAGCTATCAATGGAGGGTGTCGCAGCTCGAGTGCATCCTCAAGCTCCTCACCGAAAACGAGCTGGAGATCGTCAACGCTCTCCGCTCCGACCTCTCCAAGCCTGAACTCGAATCCCAAGTCTATGAGATAGCTATGATAAAAAACTCATGTAATTTGGCAATTAAGGAGCTGAGGAAATGGATGAAGCCAGAAAAGGTTAAAACTTCAATAACAGTTTTTCCTGCATCAGCTGAAATAGTGTCTGAACCTCTTGGTGCTATACTAGTAATTTCAGCATGGAACTATCCTTTCTTACTCTCACTTGATCCAGTTGTTGGAGCCATTGCGGCTGGTAATGTTGTGGTTCTTAAACCATCAGAACTTGCTCCAGCCACATCGTCATTGCTTGCAAAACTTGTAGGTGAATATATGGATAGCTCTTGTATAAGAGTCGTTGAGGGGGCTGTTGCTGAAACATCTGCACTATTAGAGCAAAAGTGGGATAAGATATGCTACACAGGAAATGGTAGGGTTGGGTGTATAGTGATGGCTAGTGCTGCAAAGCACCTTACACCAGTTCTTTTGGAGCTTGGAGGAAAATCCCCTGTTATCGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGCATAATTGTTGGTAAGTGGGGGTGTAATAATGGACAGGCTTGCGTCTCCCCTGATTATATCGTAACAACAAAAGATTTTGCTCCTAAGCTGGTGGAATCTCTGAAACAAGAATTGGAGAACTTCTATGGAAAGAATCAACTAGAATCAAAAGATTTGTCTCGTATTGTGAATCCTAATCACTTTGCTCGCTTGACAAAGCTCTTGGATGAGGATAAGGTTTCTGGAAAGATCGTCCATGGAGGTGAAATGGACAAAACCAACTTGAGGATAGCTCCCACCATCTTGCTCAATGTCCCACAAGACTCCTTGATCATGACTGAGGAAATATTTGGCCCTTTGCTTCCCATTGTCACGGTCGACAAATTGGAAGACAGTTTTGATTTGATAAACTCAGGAGCAAAGCCCCTTGCTGCGTATTTGTTTACCAACAAGAAGAAGCTGAAGGAGCACTTTGTAAATACTGTATCTGCCGGGGGTTTGCTTATCAATGACACGACTGGTACAGCTTGCTGTACCCTCCCTGCCTTTTGGAGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGAAAATTCTCCTTCGACGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

436

Amino Acids

47.6

Weight (kDa)

7.47

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44170 AT1G44170 AT1G44170
fragaria_vesca	FvH4_2g27350 FvH4_2g27350
malus_domestica	MD00G1029100.v1.1 MD15G1345700.v1.1
prunus_persica	Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1 Prupe.1G493800_v2.0.a1
pyrus_communis	pycom08g13760 pycom15g31000
rosa_chinensis	RchiOBHm_Chr4g0425691 RchiOBHm_Chr6g0296171 RchiOBHm_Chr6g0296191
rosa_laevigata	RLG00000007347 RLG00000011719 RLG00000011721
rosa_multiflora	Rmu_co8328491.1_g000001 Rmu_sc0028042.1_g000002 Rmu_sc0035469.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367670 Rroxscaffold_7G00171760 Rroxscaffold_7G00171780 Rroxscaffold_7G00178290 Rroxscaffold_7G00178300
rosa_rugosa	Rorug04G0204900 Rorug06G0259300 Rorug06G0259400
rosa_samantha	Rh4BG268300 Rh4DG263900 Rh6AG371400 Rh6AG371500 Rh6BG379300 Rh6BG379400 Rh6CG384700 Rh6DG371800 Rh6DG371900
rosa_wichuraiana	Rw4G022650 Rw6G032360 Rw6G032370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	1074
AciI	CCGC	3 cut(s)	33, 169, 413
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	1287
AcuI	CTGAAG	1 cut(s)	1178
AcyI	GRCGYC	1 cut(s)	1300
AfaI	GTAC	2 cut(s)	1219, 1231
AfiI	CCNNNNNNNGG	3 cut(s)	401, 981, 1248
AgsI	TTSAA	1 cut(s)	294
AhlI	ACTAGT	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
Alw21I	GWGCWC	1 cut(s)	1167
Alw26I	GTCTC	2 cut(s)	766, 879
AlwI	GGATC	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	45, 1048
ApeKI	GCWGC	3 cut(s)	109, 623, 1127
ApoI	RAATTY	1 cut(s)	1287
ArsI	GACNNNNNNTTYG	4 cut(s)	189, 221, 857, 889
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	1049
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	3 cut(s)	127, 500, 971
AvaI	CYCGRG	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	1 cut(s)	1167
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	121, 610, 1114
BccI	CCATC	3 cut(s)	448, 607, 1004
BclI	TGATCA	1 cut(s)	1026
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	2 cut(s)	766, 879
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	3 cut(s)	350, 618, 857
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	33, 110, 414, 624, 1128
BlsI	GCNGC	5 cut(s)	34, 111, 415, 625, 1129
Bme1390I	CCNGG	1 cut(s)	1189
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	1049
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	1189
BmsI	GCATC	3 cut(s)	129, 320, 699
BpiI	GAAGAC	1 cut(s)	1092
BplI	GAGNNNNNCTC	2 cut(s)	973, 1005
BpmI	CTGGAG	2 cut(s)	170, 438
Bpu10I	CCTNAGC	2 cut(s)	257, 801
BpuEI	CTTGAG	2 cut(s)	110, 1000
BpuMI	CCSGG	1 cut(s)	1189
BsaHI	GRCGYC	1 cut(s)	1300
BsaJI	CCNNGG	4 cut(s)	48, 952, 1188, 1280
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 981, 1248
Bse1I	ACTGG	3 cut(s)	395, 641, 1219
Bse3DI	GCAATG	2 cut(s)	408, 467
BseDI	CCNNGG	4 cut(s)	48, 952, 1188, 1280
BseGI	GGATG	3 cut(s)	120, 273, 928
BseLI	CCNNNNNNNGG	3 cut(s)	401, 981, 1248
BseMI	GCAATG	2 cut(s)	408, 467
BseMII	CTCAG	4 cut(s)	47, 248, 1026, 1122
BseNI	ACTGG	3 cut(s)	395, 641, 1219
BseRI	GAGGAG	2 cut(s)	122, 1264
BseXI	GCAGC	3 cut(s)	121, 610, 1114
BsgI	GTGCAG	1 cut(s)	531
Bsh1285I	CGRYCG	1 cut(s)	1074
BshFI	GGCC	2 cut(s)	47, 1050
BsiEI	CGRYCG	1 cut(s)	1074
BsiHKAI	GWGCWC	1 cut(s)	1167
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	75, 1188
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	3 cut(s)	401, 981, 1248
BsmAI	GTCTC	2 cut(s)	766, 879
BsmBI	CGTCTC	1 cut(s)	766
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	2 cut(s)	47, 1050
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	1167
Bsp143I	GATC	4 cut(s)	153, 391, 945, 1026
Bsp19I	CCATGG	2 cut(s)	952, 1280
BspACI	CCGC	3 cut(s)	33, 169, 413
BspANI	GGCC	2 cut(s)	47, 1050
BspCNI	CTCAG	4 cut(s)	48, 249, 1027, 1121
BspHI	TCATGA	1 cut(s)	1029
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	2 cut(s)	408, 467
BsrI	ACTGG	3 cut(s)	395, 641, 1219
BssECI	CCNNGG	4 cut(s)	48, 952, 1188, 1280
BssMI	GATC	4 cut(s)	153, 391, 945, 1026
BssNI	GRCGYC	1 cut(s)	1300
BssT1I	CCWWGG	3 cut(s)	48, 952, 1280
Bst4CI	ACNGT	4 cut(s)	301, 1072, 1091, 1180
BstACI	GRCGYC	1 cut(s)	1300
BstC8I	GCNNGC	4 cut(s)	474, 757, 904, 1225
BstDEI	CTNAG	5 cut(s)	56, 257, 801, 1035, 1108
BstDSI	CCRYGG	2 cut(s)	952, 1280
BstENI	CCTNNNNNAGG	1 cut(s)	1246
BstF5I	GGATG	3 cut(s)	120, 273, 928
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	4 cut(s)	156, 394, 948, 1029
BstMAI	GTCTC	2 cut(s)	766, 879
BstMBI	GATC	4 cut(s)	153, 391, 945, 1026
BstMCI	CGRYCG	1 cut(s)	1074
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 68, 413, 623, 1162
BstSCI	CCNGG	1 cut(s)	1187
BstV1I	GCAGC	3 cut(s)	121, 610, 1114
BstV2I	GAAGAC	1 cut(s)	1092
BsuRI	GGCC	2 cut(s)	47, 1050
BtgI	CCRYGG	2 cut(s)	952, 1280
BtsCI	GGATG	3 cut(s)	120, 273, 928
Cac8I	GCNNGC	4 cut(s)	474, 757, 904, 1225
CciI	TCATGA	1 cut(s)	1029
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	1 cut(s)	1049
CseI	GACGC	1 cut(s)	748
Csp6I	GTAC	2 cut(s)	1218, 1230
CviAII	CATG	5 cut(s)	234, 363, 953, 1030, 1281
CviQI	GTAC	2 cut(s)	1218, 1230
DdeI	CTNAG	5 cut(s)	56, 257, 801, 1035, 1108
DpnI	GATC	4 cut(s)	155, 393, 947, 1028
DpnII	GATC	4 cut(s)	153, 391, 945, 1026
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	3 cut(s)	48, 952, 1280
Eco57I	CTGAAG	1 cut(s)	1178
Eco88I	CYCGRG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	1246
EcoT14I	CCWWGG	3 cut(s)	48, 952, 1280
ErhI	CCWWGG	3 cut(s)	48, 952, 1280
Esp3I	CGTCTC	1 cut(s)	766
FaeI	CATG	5 cut(s)	237, 366, 956, 1033, 1284
FalI	AAGNNNNNCTT	2 cut(s)	1151, 1183
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	5 cut(s)	233, 362, 952, 1029, 1280
FbaI	TGATCA	1 cut(s)	1026
FblI	GTMKAC	1 cut(s)	1074
Fnu4HI	GCNGC	5 cut(s)	33, 110, 414, 624, 1128
FokI	GGATG	3 cut(s)	107, 280, 935
Fsp4HI	GCNGC	5 cut(s)	33, 110, 414, 624, 1128
FspBI	CTAG	3 cut(s)	350, 618, 857
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	5 cut(s)	33, 110, 414, 624, 1128
GsuI	CTGGAG	2 cut(s)	170, 438
HaeIII	GGCC	2 cut(s)	47, 1050
HapII	CCGG	2 cut(s)	75, 1188
HgaI	GACGC	1 cut(s)	748
HhaI	GCGC	1 cut(s)	717
Hin1I	GRCGYC	1 cut(s)	1300
Hin1II	CATG	5 cut(s)	237, 366, 956, 1033, 1284
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	2 cut(s)	160, 1075
HindII	GTYRAC	2 cut(s)	160, 1075
HinfI	GANTC	9 cut(s)	82, 197, 516, 683, 812, 850, 860, 886, 1019
HpaII	CCGG	2 cut(s)	75, 1188
HphI	GGTGA	3 cut(s)	127, 500, 971
Hpy166II	GTNNAC	3 cut(s)	160, 1075, 1140
Hpy188I	TCNGA	5 cut(s)	87, 175, 331, 445, 819
Hpy188III	TCNNGA	3 cut(s)	939, 1030, 1110
Hpy8I	GTNNAC	3 cut(s)	160, 1075, 1140
Hpy99I	CGWCG	2 cut(s)	26, 1302
HpyAV	CCTTC	3 cut(s)	76, 1153, 1304
HpyCH4III	ACNGT	4 cut(s)	301, 1072, 1091, 1180
HpyCH4V	TGCA	7 cut(s)	120, 311, 476, 548, 626, 707, 1275
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 68, 413, 623, 1162
HpyF3I	CTNAG	5 cut(s)	56, 257, 801, 1035, 1108
Hsp92I	GRCGYC	1 cut(s)	1300
Hsp92II	CATG	5 cut(s)	237, 366, 956, 1033, 1284
HspAI	GCGC	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	1026
Kzo9I	GATC	4 cut(s)	153, 391, 945, 1026
Lsp1109I	GCAGC	3 cut(s)	121, 610, 1114
LweI	GCATC	3 cut(s)	129, 320, 699
MaeI	CTAG	3 cut(s)	350, 618, 857
MaeIII	GTNAC	2 cut(s)	778, 1066
MalI	GATC	4 cut(s)	155, 393, 947, 1028
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	4 cut(s)	153, 391, 945, 1026
MboII	GAAGA	3 cut(s)	38, 1097, 1162
MhlI	GDGCHC	1 cut(s)	1167
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	7 cut(s)	238, 246, 354, 720, 827, 1079, 1287
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	3 cut(s)	76, 525, 1013
MmeI	TCCRAC	2 cut(s)	198, 382
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	249, 285, 435
MslI	CAYNNNNRTG	1 cut(s)	957
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	75, 1188
MspR9I	CCNGG	1 cut(s)	1189
MwoI	GCNNNNNNNGC	5 cut(s)	38, 68, 413, 623, 1162
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	2 cut(s)	952, 1280
NdeII	GATC	4 cut(s)	153, 391, 945, 1026
NlaIII	CATG	5 cut(s)	237, 366, 956, 1033, 1284
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	1066
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	1029
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	6 cut(s)	197, 683, 812, 850, 860, 886
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	5 cut(s)	34, 111, 415, 625, 1129
PleI	GAGTC	3 cut(s)	76, 524, 1013
PpsI	GAGTC	3 cut(s)	76, 524, 1013
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	1049
PspXI	VCTCGAGB	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	2 cut(s)	1219, 1231
RsaNI	GTAC	2 cut(s)	1218, 1230
RseI	CAYNNNNRTG	1 cut(s)	957
SalI	GTCGAC	1 cut(s)	1073
SaqAI	TTAA	3 cut(s)	249, 285, 435
SatI	GCNGC	5 cut(s)	33, 110, 414, 624, 1128
Sau3AI	GATC	4 cut(s)	153, 391, 945, 1026
Sau96I	GGNCC	1 cut(s)	1049
SchI	GAGTC	3 cut(s)	76, 525, 1013
ScrFI	CCNGG	1 cut(s)	1189
SduI	GDGCHC	1 cut(s)	1167
SfaNI	GCATC	3 cut(s)	129, 320, 699
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	3 cut(s)	113, 125, 979
SmoI	CTYRAG	3 cut(s)	113, 125, 979
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	7 cut(s)	238, 246, 354, 720, 827, 1079, 1287
SsiI	CCGC	3 cut(s)	33, 169, 413
SspI	AATATT	1 cut(s)	1044
SspMI	CTAG	3 cut(s)	350, 618, 857
StyD4I	CCNGG	1 cut(s)	1187
StyI	CCWWGG	3 cut(s)	48, 952, 1280
TaaI	ACNGT	4 cut(s)	301, 1072, 1091, 1180
TaqI	TCGA	5 cut(s)	21, 114, 195, 1074, 1297
TasI	AATT	7 cut(s)	238, 246, 354, 720, 827, 1079, 1287
TauI	GCSGC	2 cut(s)	35, 416
TfiI	GAWTC	6 cut(s)	197, 683, 812, 850, 860, 886
Tru1I	TTAA	3 cut(s)	249, 285, 435
Tru9I	TTAA	3 cut(s)	249, 285, 435
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	3 cut(s)	109, 623, 1127
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	1246
XapI	RAATTY	1 cut(s)	1287
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	1074
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	350, 618, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.