RchiOBHm_Chr6g0296191

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
57966316 .. 57971448
5133 bp
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UTR
Exon/CDS
Intron
PRQ26585

Sequence Viewer

Length: 1653 bp
ATGAGTCACAGCCCCCACCTCTCCGTCACATTTTCGGTTTTTTTGCTTTCTTCACAAGTCAGATTTTCACACCTGGAAGTGGATATCAGACGCACATATATAAATAGACGCATCCAATTACAAGTCACCACCATTCACACAAAAAGTCGTCGTCTTCTTCTTCCTCTACACCGTTTTTCTTCCGTACTTGCAATGGCGGCGAAGGTAGGATTCGACGGAGAAGACGCGGGGGCGCTGGTGACCGAGCTCCGAGCGAGCTTCGCGTCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTACTCAAGCTCGCCACCTATCACGAGGCCGAGATCGTCGACGCTCTCAACTCCGACCTCTCCAAGCCGGAATTCGAGACCCTGATCTACGAGATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCGTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTATTAGGTGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGCAACGGAAGAGTGGGAAGGATTGTGATGGCTAGTGCTGCAAAGCACCTTACACCTGTCCTTTTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCTGGCATCAACTTACAAGTTGCAAGTAGGCGGATAATTGCAGGAAAGTGGGGCTGTAATAATGGACAGGCTTGCATTTCCCCTGATTACATTTTAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCTTGAAAAGTGAATTGGAGAACTTCTATGGGAAGAATCCACTACAATCAAAAGATTTGTCTCGTATTGTGAATTCTAATCACTATGCTCGCTTGACAAAGCTGTTGGATGAGGATAAGGTTTCTGGTAAGGTCATCCATGGAGGTGAAAGGGACACAAGCAACTTGAGGATAGCTCCCACCATCTTACTCGATGTCCCACAAGACTCCCTGATTATGCAGGAGGAGATCTTTGGTCCATTGCTTCCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAACCTCAGGAACAAAGCCACTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCACTTCGTAAGGAATATATCTGCAGGAGGTTTGGTTATCAACGACACTACCATTCATCTTGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTATCGAGGTTTTTCTGGAGATGCTTCTGTGAGGTACCCTCCATACACAAAGGGGAAGCTAAGACTTCTAAAGGCTCTGGTCGGTGGTAGTCTATTGGGCATAATCCGCGCTCTATTTGGATGGTCTAAGGCTTAA

Protein Analysis

550

Amino Acids

59.97

Weight (kDa)

9.27

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 73 - 505 2.4e-81 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1551
AccB1I GGYRCC 1 cut(s) 1551
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 351
AccII CGCG 3 cut(s) 227, 263, 1626
AciI CCGC 4 cut(s) 197, 227, 907, 1624
AclWI GGATC 2 cut(s) 578, 1362
AcsI RAATTY 3 cut(s) 383, 1078, 1478
AcuI CTGAAG 3 cut(s) 470, 1370, 1480
AfaI GTAC 3 cut(s) 186, 540, 1553
AfiI CCNNNNNNNGG 4 cut(s) 79, 276, 593, 1439
AgsI TTSAA 4 cut(s) 418, 486, 1012, 1490
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 1004, 1036
Alw21I GWGCWC 2 cut(s) 249, 425
Alw26I GTCTC 2 cut(s) 383, 1071
AlwI GGATC 2 cut(s) 578, 1362
AlwNI CAGNNNCTG 1 cut(s) 1348
AoxI GGCC 2 cut(s) 310, 339
ApeKI GCWGC 4 cut(s) 301, 605, 815, 1319
ApoI RAATTY 3 cut(s) 383, 1078, 1478
ArsI GACNNNNNNTTYG 2 cut(s) 1049, 1081
Asp718I GGTACC 1 cut(s) 1551
AspLEI GCGC 2 cut(s) 235, 1628
AspS9I GGNCC 1 cut(s) 1241
AsuHPI GGTGA 4 cut(s) 118, 250, 692, 1163
AvaII GGWCC 1 cut(s) 1241
AxyI CCTNAGG 1 cut(s) 1300
BanI GGYRCC 1 cut(s) 1551
BanII GRGCYC 2 cut(s) 249, 425
BauI CACGAG 2 cut(s) 335, 424
BbsI GAAGAC 4 cut(s) 146, 228, 258, 1284
Bbv12I GWGCWC 2 cut(s) 249, 425
BbvI GCAGC 4 cut(s) 313, 617, 802, 1306
BccI CCATC 4 cut(s) 640, 799, 1196, 1632
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 383, 1071
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 2 cut(s) 618, 1377
BfoI RGCGCY 1 cut(s) 236
BglII AGATCT 1 cut(s) 1233
BisI GCNGC 5 cut(s) 198, 302, 606, 816, 1320
BlsI GCNGC 5 cut(s) 199, 303, 607, 817, 1321
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 1241
BmgT120I GGNCC 1 cut(s) 1241
BmiI GGNNCC 2 cut(s) 598, 1553
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 4 cut(s) 120, 891, 994, 1528
BpiI GAAGAC 4 cut(s) 146, 228, 258, 1284
BplI GAGNNNNNCTC 4 cut(s) 1165, 1197, 1540, 1572
BpmI CTGGAG 2 cut(s) 767, 1554
BpuEI CTTGAG 2 cut(s) 302, 1192
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 1144, 1471
BsaXI ACNNNNNCTCC 4 cut(s) 740, 770, 1374, 1404
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 276, 593, 1439
Bse1I ACTGG 2 cut(s) 587, 750
Bse21I CCTNAGG 1 cut(s) 1300
Bse3DI GCAATG 4 cut(s) 198, 600, 659, 1244
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 1144, 1471
BseGI GGATG 6 cut(s) 111, 465, 1009, 1120, 1140, 1643
BseLI CCNNNNNNNGG 4 cut(s) 79, 276, 593, 1439
BseMI GCAATG 4 cut(s) 198, 600, 659, 1244
BseMII CTCAG 2 cut(s) 513, 1314
BseNI ACTGG 2 cut(s) 587, 750
BseRI GAGGAG 2 cut(s) 1244, 1455
BseXI GCAGC 4 cut(s) 313, 617, 802, 1306
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 3 cut(s) 227, 263, 1626
BshFI GGCC 2 cut(s) 312, 341
BshNI GGYRCC 1 cut(s) 1551
BsiHKAI GWGCWC 2 cut(s) 249, 425
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 4 cut(s) 562, 773, 1172, 1187
BslI CCNNNNNNNGG 4 cut(s) 79, 276, 593, 1439
BsmAI GTCTC 2 cut(s) 383, 1071
BsmFI GGGAC 4 cut(s) 562, 773, 1172, 1187
BsnI GGCC 2 cut(s) 312, 341
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 249, 425
Bsp143I GATC 5 cut(s) 345, 396, 583, 1233, 1354
Bsp19I CCATGG 2 cut(s) 1144, 1471
BspACI CCGC 4 cut(s) 197, 227, 907, 1624
BspANI GGCC 2 cut(s) 312, 341
BspCNI CTCAG 2 cut(s) 514, 1313
BspFNI CGCG 3 cut(s) 227, 263, 1626
BspLI GGNNCC 2 cut(s) 598, 1553
BspMAI CTGCAG 1 cut(s) 1381
BspPI GGATC 2 cut(s) 578, 1362
BspQI GCTCTTC 2 cut(s) 413, 703
BspT107I GGYRCC 1 cut(s) 1551
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 4 cut(s) 198, 600, 659, 1244
BsrI ACTGG 2 cut(s) 587, 750
BssECI CCNNGG 2 cut(s) 1144, 1471
BssMI GATC 5 cut(s) 345, 396, 583, 1233, 1354
BssSI CACGAG 2 cut(s) 335, 424
BssT1I CCWWGG 2 cut(s) 1144, 1471
Bst2BI CACGAG 2 cut(s) 335, 424
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 173, 1264
Bst6I CTCTTC 3 cut(s) 413, 703, 781
BstC8I GCNNGC 5 cut(s) 256, 324, 666, 949, 1096
BstDEI CTNAG 4 cut(s) 522, 1300, 1577, 1644
BstDSI CCRYGG 2 cut(s) 1144, 1471
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 6 cut(s) 111, 465, 1009, 1120, 1140, 1643
BstFNI CGCG 3 cut(s) 227, 263, 1626
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 235, 1628
BstKTI GATC 5 cut(s) 348, 399, 586, 1236, 1357
BstMAI GTCTC 2 cut(s) 383, 1071
BstMBI GATC 5 cut(s) 345, 396, 583, 1233, 1354
BstMWI GCNNNNNNNGC 6 cut(s) 197, 260, 605, 614, 815, 1623
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 415
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 618, 1377
BstUI CGCG 3 cut(s) 227, 263, 1626
BstV1I GCAGC 4 cut(s) 313, 617, 802, 1306
BstV2I GAAGAC 4 cut(s) 146, 228, 258, 1284
BstX2I RGATCY 1 cut(s) 1233
BstYI RGATCY 1 cut(s) 1233
Bsu36I CCTNAGG 1 cut(s) 1300
BsuRI GGCC 2 cut(s) 312, 341
BtgI CCRYGG 2 cut(s) 1144, 1471
BtsCI GGATG 6 cut(s) 111, 465, 1009, 1120, 1140, 1643
Cac8I GCNNGC 5 cut(s) 256, 324, 666, 949, 1096
CaiI CAGNNNCTG 1 cut(s) 1348
CfoI GCGC 2 cut(s) 235, 1628
Cfr13I GGNCC 1 cut(s) 1241
CseI GACGC 5 cut(s) 99, 117, 233, 252, 362
Csp6I GTAC 3 cut(s) 185, 539, 1552
CviAII CATG 5 cut(s) 412, 456, 555, 1145, 1472
CviQI GTAC 3 cut(s) 185, 539, 1552
DdeI CTNAG 4 cut(s) 522, 1300, 1577, 1644
DpnI GATC 5 cut(s) 347, 398, 585, 1235, 1356
DpnII GATC 5 cut(s) 345, 396, 583, 1233, 1354
Eam1104I CTCTTC 3 cut(s) 413, 703, 781
EarI CTCTTC 3 cut(s) 413, 703, 781
EciI GGCGGA 1 cut(s) 922
Ecl136II GAGCTC 2 cut(s) 247, 423
Eco130I CCWWGG 2 cut(s) 1144, 1471
Eco24I GRGCYC 2 cut(s) 249, 425
Eco31I GGTCTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 1241
Eco53kI GAGCTC 2 cut(s) 247, 423
Eco57I CTGAAG 3 cut(s) 470, 1370, 1480
Eco81I CCTNAGG 1 cut(s) 1300
Eco91I GGTNACC 1 cut(s) 238
EcoICRI GAGCTC 2 cut(s) 247, 423
EcoO65I GGTNACC 1 cut(s) 238
EcoRI GAATTC 2 cut(s) 383, 1078
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 1144, 1471
EcoT38I GRGCYC 2 cut(s) 249, 425
ErhI CCWWGG 2 cut(s) 1144, 1471
FaeI CATG 5 cut(s) 415, 459, 558, 1148, 1475
FalI AAGNNNNNCTT 2 cut(s) 1343, 1375
FaqI GGGAC 4 cut(s) 562, 773, 1172, 1187
FatI CATG 5 cut(s) 411, 455, 554, 1144, 1471
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 198, 302, 606, 816, 1320
FokI GGATG 5 cut(s) 98, 472, 1016, 1127, 1127
FriOI GRGCYC 2 cut(s) 249, 425
Fsp4HI GCNGC 5 cut(s) 198, 302, 606, 816, 1320
FspBI CTAG 1 cut(s) 810
GlaI GCGC 2 cut(s) 234, 1627
GluI GCNGC 5 cut(s) 198, 302, 606, 816, 1320
GsuI CTGGAG 2 cut(s) 767, 1554
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 2 cut(s) 312, 341
HapII CCGG 1 cut(s) 380
HgaI GACGC 5 cut(s) 99, 117, 233, 252, 362
HhaI GCGC 2 cut(s) 235, 1628
Hin1II CATG 5 cut(s) 415, 459, 558, 1148, 1475
Hin6I GCGC 2 cut(s) 233, 1626
HinP1I GCGC 2 cut(s) 233, 1626
HincII GTYRAC 2 cut(s) 352, 1267
HindII GTYRAC 2 cut(s) 352, 1267
HinfI GANTC 6 cut(s) 4, 210, 274, 875, 1042, 1211
HpaII CCGG 1 cut(s) 380
HphI GGTGA 4 cut(s) 118, 250, 692, 1163
Hpy166II GTNNAC 3 cut(s) 352, 1267, 1332
Hpy188I TCNGA 7 cut(s) 62, 89, 251, 279, 367, 523, 637
Hpy188III TCNNGA 4 cut(s) 335, 388, 1302, 1533
Hpy8I GTNNAC 3 cut(s) 352, 1267, 1332
Hpy99I CGWCG 4 cut(s) 153, 218, 353, 356
HpyAV CCTTC 6 cut(s) 196, 466, 510, 789, 1345, 1504
HpyCH4III ACNGT 2 cut(s) 173, 1264
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 260, 605, 614, 815, 1623
HpyF3I CTNAG 4 cut(s) 522, 1300, 1577, 1644
Hsp92II CATG 5 cut(s) 415, 459, 558, 1148, 1475
HspAI GCGC 2 cut(s) 233, 1626
KpnI GGTACC 1 cut(s) 1555
Kzo9I GATC 5 cut(s) 345, 396, 583, 1233, 1354
LguI GCTCTTC 2 cut(s) 413, 703
LmnI GCTCC 7 cut(s) 252, 279, 596, 649, 748, 844, 1186
Lsp1109I GCAGC 4 cut(s) 313, 617, 802, 1306
LweI GCATC 4 cut(s) 120, 891, 994, 1528
MaeI CTAG 1 cut(s) 810
MaeIII GTNAC 5 cut(s) 5, 25, 124, 238, 770
MalI GATC 5 cut(s) 347, 398, 585, 1235, 1356
MboI GATC 5 cut(s) 345, 396, 583, 1233, 1354
MflI RGATCY 1 cut(s) 1233
MhlI GDGCHC 2 cut(s) 249, 425
MlyI GAGTC 3 cut(s) 13, 268, 1205
MmeI TCCRAC 3 cut(s) 390, 574, 1092
MseI TTAA 2 cut(s) 971, 1651
MslI CAYNNNNRTG 1 cut(s) 1149
MspA1I CMGCKG 2 cut(s) 509, 608
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 3 cut(s) 227, 263, 1626
MwoI GCNNNNNNNGC 6 cut(s) 197, 260, 605, 614, 815, 1623
NcoI CCATGG 2 cut(s) 1144, 1471
NdeII GATC 5 cut(s) 345, 396, 583, 1233, 1354
NlaIII CATG 5 cut(s) 415, 459, 558, 1148, 1475
NlaIV GGNNCC 2 cut(s) 598, 1553
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 5, 25, 124, 238
NspI RCATGY 1 cut(s) 415
PciSI GCTCTTC 2 cut(s) 413, 703
PfeI GAWTC 3 cut(s) 210, 875, 1042
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 5 cut(s) 199, 303, 607, 817, 1321
PleI GAGTC 3 cut(s) 12, 268, 1205
PpsI GAGTC 3 cut(s) 12, 268, 1205
Psp124BI GAGCTC 2 cut(s) 249, 425
Psp6I CCWGG 1 cut(s) 72
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 598, 1553
PspPI GGNCC 1 cut(s) 1241
PstI CTGCAG 1 cut(s) 1381
PstNI CAGNNNCTG 1 cut(s) 1348
PsuI RGATCY 1 cut(s) 1233
PvuII CAGCTG 2 cut(s) 509, 608
RsaI GTAC 3 cut(s) 186, 540, 1553
RsaNI GTAC 3 cut(s) 185, 539, 1552
RseI CAYNNNNRTG 1 cut(s) 1149
SacI GAGCTC 2 cut(s) 249, 425
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 2 cut(s) 413, 703
SaqAI TTAA 2 cut(s) 971, 1651
SatI GCNGC 5 cut(s) 198, 302, 606, 816, 1320
Sau3AI GATC 5 cut(s) 345, 396, 583, 1233, 1354
Sau96I GGNCC 1 cut(s) 1241
SchI GAGTC 3 cut(s) 13, 268, 1205
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 249, 425
SfaNI GCATC 4 cut(s) 120, 891, 994, 1528
SfcI CTRYAG 2 cut(s) 618, 1377
SgrDI CGTCGACG 1 cut(s) 350
SinI GGWCC 1 cut(s) 1241
SmiMI CAYNNNNRTG 1 cut(s) 1149
SmlI CTYRAG 2 cut(s) 317, 1171
SmoI CTYRAG 2 cut(s) 317, 1171
SsiI CCGC 4 cut(s) 197, 227, 907, 1624
SspMI CTAG 1 cut(s) 810
SstI GAGCTC 2 cut(s) 249, 425
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 1144, 1471
TaaI ACNGT 2 cut(s) 173, 1264
TaqI TCGA 5 cut(s) 213, 351, 387, 1197, 1522
TaqII GACCGA 1 cut(s) 257
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 210, 875, 1042
Tru1I TTAA 2 cut(s) 971, 1651
Tru9I TTAA 2 cut(s) 971, 1651
TseFI GTSAC 4 cut(s) 5, 25, 124, 238
TseI GCWGC 4 cut(s) 301, 605, 815, 1319
Tsp45I GTSAC 4 cut(s) 5, 25, 124, 238
TspDTI ATGAA 2 cut(s) 476, 1400
TspGWI ACGGA 4 cut(s) 13, 172, 231, 798
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 1241
XapI RAATTY 3 cut(s) 383, 1078, 1478
XceI RCATGY 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.