Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028042.1

Orthogroup ID

OG0013997

Physical Location & Seq

Genomic Coordinates Reverse (-)

10934 .. 12517

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028042.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgcgatccggtgtagcctccggaatagcctccattcaaaatctctacagagcagcttatagatccatcaccagaaaatggcataaatataagaagaaaccggcttccgatgaagaacccaaagctgatgaagtccacaaggttatagacaacaatgtacccgttgagggggagggcaaggatggtttaatccaagacgagaaaaatatgaatggatttcaatatcaaagctttagattcaacagcccaggaatgcgaggaaatgattccggtagcgctagatcttcgagcagcttcttcaagcactcaagcgtcgatggtttatttaacatgtcgtgtcataatctcacaagatgtggcacacgatctgcgagtcacaccccttcacgttctcatcacaaaaagaagactcggaaaagctgtccggcctcaccagaaacctccaactcatcggggaggaaaagctcaaccgactcaaccagtactacgcctctctcaagaagtgcacctctctccaaaagcgggcgcctctcgaattgtgagagcaggagaagcaccaccatcatgttttcgcagtcatccgggatgttgaaacccccggccatcgagaagcagctcgagtgcaccttggaggagctgtgctttggatgcaacaagaagatgaaggtgacgagggttgttgtcaaagacacagggcaaatggcacaagaagaggaattggtaacgataaatgtgaagccgggatggaagaaaggaacgaagattacatttgaaggattgggaaatgagagacctggtgcatacccagctgacataatttttgtgatagctgagaagaggcatcatttgtttgtaagagaaggagatgacttggagttgacagtagaaatcccattgatacaggcccttactggttgcacaatttcaattcctcttctgggtggagaaaatacgacattgacaattgaagacatcatataccccggctacgaaaagaccattccagaccaaggtatgccgatctctaaggtggaagggaagagaggaaatctgaaagtcacgttcctggttgagttccctacttctctaacacacgagcaaagatcagatgttcatactattttagaggaatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

378

Amino Acids

41.79

Weight (kDa)

9.0

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44160
fragaria_vesca	FvH4_2g27360
malus_domestica	MD00G1029000.v1.1 MD15G1345600.v1.1
prunus_persica	Prupe.1G493700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296201
rosa_laevigata	RLG00000011718
rosa_multiflora	Rmu_sc0028042.1_g000003 Rmu_sc0035469.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171750 Rroxscaffold_7G00178310
rosa_rugosa	Rorug06G0259400
rosa_samantha	Rh6AG371600 Rh6BG379500 Rh6CG384800 Rh6DG372000
rosa_wichuraiana	Rw6G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	2 cut(s)	159, 484
AfeI	AGCGCT	1 cut(s)	277
AfiI	CCNNNNNNNGG	6 cut(s)	78, 167, 168, 522, 938, 1010
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	38, 221, 241, 301, 592, 773, 927, 968
AjnI	CCWGG	3 cut(s)	247, 793, 1065
Alw21I	GWGCWC	2 cut(s)	508, 626
Alw26I	GTCTC	1 cut(s)	784
Alw44I	GTGCAC	2 cut(s)	504, 622
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	20
Aor51HI	AGCGCT	1 cut(s)	277
AoxI	GGCC	3 cut(s)	426, 600, 903
ApaLI	GTGCAC	2 cut(s)	504, 622
ApeKI	GCWGC	3 cut(s)	53, 291, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	278, 528
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	4 cut(s)	583, 599, 741, 984
AsuHPI	GGTGA	3 cut(s)	61, 423, 679
AvaI	CYCGRG	1 cut(s)	617
BaeGI	GKGCMC	2 cut(s)	508, 626
BanI	GGYRCC	1 cut(s)	525
BauI	CACGAG	1 cut(s)	1094
BbsI	GAAGAC	2 cut(s)	413, 975
Bbv12I	GWGCWC	2 cut(s)	508, 626
BbvI	GCAGC	3 cut(s)	65, 303, 625
BccI	CCATC	6 cut(s)	74, 176, 311, 569, 611, 738
BciT130I	CCWGG	3 cut(s)	249, 795, 1067
BcnI	CCSGG	4 cut(s)	583, 599, 741, 984
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	2 cut(s)	279, 529
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	3 cut(s)	54, 292, 614
BlsI	GCNGC	3 cut(s)	55, 293, 615
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	7 cut(s)	249, 583, 599, 741, 795, 984, 1067
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	7 cut(s)	249, 583, 599, 741, 795, 984, 1067
BmsI	GCATC	2 cut(s)	638, 850
BpiI	GAAGAC	2 cut(s)	413, 975
BpuEI	CTTGAG	2 cut(s)	292, 481
BpuMI	CCSGG	4 cut(s)	583, 599, 741, 984
BsaHI	GRCGYC	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	5 cut(s)	247, 597, 627, 982, 1009
BsaWI	WCCGGW	3 cut(s)	8, 20, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 167, 168, 522, 938, 1010
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	480, 916
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	3 cut(s)	249, 795, 1067
BseDI	CCNNGG	5 cut(s)	247, 597, 627, 982, 1009
BseGI	GGATG	5 cut(s)	187, 578, 591, 653, 749
BseLI	CCNNNNNNNGG	6 cut(s)	78, 167, 168, 522, 938, 1010
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	2 cut(s)	480, 916
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	2 cut(s)	508, 626
BseXI	GCAGC	3 cut(s)	65, 303, 625
BseYI	CCCAGC	1 cut(s)	805
BshFI	GGCC	3 cut(s)	428, 602, 905
BshNI	GGYRCC	1 cut(s)	525
BsiHKAI	GWGCWC	2 cut(s)	508, 626
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	9 cut(s)	9, 21, 101, 270, 425, 582, 599, 740, 984
BslI	CCNNNNNNNGG	6 cut(s)	78, 167, 168, 522, 938, 1010
BsmAI	GTCTC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	428, 602, 905
Bso31I	GGTCTC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	508, 626
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	3 cut(s)	428, 602, 905
BspCNI	CTCAG	1 cut(s)	823
BspEI	TCCGGA	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	480, 916
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	5 cut(s)	247, 597, 627, 982, 1009
BssMI	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
BssNI	GRCGYC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	1094
BssT1I	CCWWGG	2 cut(s)	627, 1009
Bst2BI	CACGAG	1 cut(s)	1094
Bst2UI	CCWGG	3 cut(s)	249, 795, 1067
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	4 cut(s)	705, 830, 939, 1034
BstACI	GRCGYC	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	831, 1026
BstF5I	GGATG	5 cut(s)	187, 578, 591, 653, 749
BstH2I	RGCGCY	2 cut(s)	279, 529
BstHHI	GCGC	2 cut(s)	278, 528
BstKTI	GATC	6 cut(s)	8, 65, 284, 368, 1023, 1106
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
BstMWI	GCNNNNNNNGC	3 cut(s)	552, 648, 806
BstNI	CCWGG	3 cut(s)	249, 795, 1067
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	7 cut(s)	247, 581, 597, 739, 793, 982, 1065
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	2 cut(s)	508, 626
BstV1I	GCAGC	3 cut(s)	65, 303, 625
BstV2I	GAAGAC	2 cut(s)	413, 975
BstX2I	RGATCY	2 cut(s)	62, 281
BstYI	RGATCY	2 cut(s)	62, 281
BsuRI	GGCC	3 cut(s)	428, 602, 905
BtsCI	GGATG	5 cut(s)	187, 578, 591, 653, 749
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	2 cut(s)	278, 528
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	2 cut(s)	158, 483
CviAII	CATG	2 cut(s)	331, 565
CviQI	GTAC	2 cut(s)	158, 483
DdeI	CTNAG	2 cut(s)	831, 1026
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	6 cut(s)	7, 64, 283, 367, 1022, 1105
DpnII	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	705, 830, 939, 1034
EarI	CTCTTC	4 cut(s)	705, 830, 939, 1034
Eco130I	CCWWGG	2 cut(s)	627, 1009
Eco31I	GGTCTC	1 cut(s)	784
Eco47III	AGCGCT	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	3 cut(s)	247, 793, 1065
EcoT14I	CCWWGG	2 cut(s)	627, 1009
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	627, 1009
FaeI	CATG	2 cut(s)	334, 568
FatI	CATG	2 cut(s)	330, 564
FauI	CCCGC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	54, 292, 614
FokI	GGATG	5 cut(s)	194, 565, 598, 660, 756
Fsp4HI	GCNGC	3 cut(s)	54, 292, 614
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	277, 527
GluI	GCNGC	3 cut(s)	54, 292, 614
GsaI	CCCAGC	1 cut(s)	809
HaeII	RGCGCY	2 cut(s)	279, 529
HaeIII	GGCC	3 cut(s)	428, 602, 905
HapII	CCGG	9 cut(s)	9, 21, 101, 270, 425, 582, 599, 740, 984
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	278, 528
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	334, 568
Hin6I	GCGC	2 cut(s)	276, 526
HinP1I	GCGC	2 cut(s)	276, 526
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	5 cut(s)	237, 266, 373, 409, 473
HpaII	CCGG	9 cut(s)	9, 21, 101, 270, 425, 582, 599, 740, 984
HphI	GGTGA	3 cut(s)	61, 423, 679
Hpy166II	GTNNAC	4 cut(s)	136, 506, 624, 879
Hpy188I	TCNGA	4 cut(s)	109, 414, 1053, 1108
Hpy188III	TCNNGA	5 cut(s)	21, 498, 532, 607, 1004
Hpy8I	GTNNAC	4 cut(s)	136, 506, 624, 879
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	5 cut(s)	393, 658, 767, 854, 1028
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4IV	ACGT	2 cut(s)	388, 1061
HpyCH4V	TGCA	5 cut(s)	506, 624, 651, 800, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	552, 648, 806
HpyF3I	CTNAG	2 cut(s)	831, 1026
HpySE526I	ACGT	2 cut(s)	388, 1061
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	2 cut(s)	334, 568
HspAI	GCGC	2 cut(s)	276, 526
KasI	GGCGCC	1 cut(s)	525
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	3 cut(s)	65, 303, 625
LweI	GCATC	2 cut(s)	638, 850
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	388, 1061
MaeIII	GTNAC	4 cut(s)	374, 667, 721, 1057
MalI	GATC	6 cut(s)	7, 64, 283, 367, 1022, 1105
MboI	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	2 cut(s)	62, 281
MhlI	GDGCHC	2 cut(s)	508, 626
MluCI	AATT	6 cut(s)	535, 716, 816, 921, 927, 963
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	3 cut(s)	382, 403, 467
MmeI	TCCRAC	1 cut(s)	468
MroI	TCCGGA	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	3 cut(s)	188, 327, 1135
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	9 cut(s)	9, 21, 101, 270, 425, 582, 599, 740, 984
MspR9I	CCNGG	7 cut(s)	249, 583, 599, 741, 795, 984, 1067
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	3 cut(s)	249, 795, 1067
MwoI	GCNNNNNNNGC	3 cut(s)	552, 648, 806
NarI	GGCGCC	1 cut(s)	526
NciI	CCSGG	4 cut(s)	583, 599, 741, 984
NdeII	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
NlaIII	CATG	2 cut(s)	334, 568
NlaIV	GGNNCC	1 cut(s)	527
NmuCI	GTSAC	3 cut(s)	374, 667, 1057
NspI	RCATGY	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	617
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	237, 266
PflMI	CCANNNNNTGG	1 cut(s)	78
PfoI	TCCNGGA	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	55, 293, 615
PleI	GAGTC	3 cut(s)	381, 403, 467
PluTI	GGCGCC	1 cut(s)	529
PpsI	GAGTC	3 cut(s)	381, 403, 467
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	3 cut(s)	247, 793, 1065
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	3 cut(s)	247, 793, 1065
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	1 cut(s)	904
PspXI	VCTCGAGB	1 cut(s)	617
PsrI	GAACNNNNNNTAC	2 cut(s)	748, 780
PsuI	RGATCY	2 cut(s)	62, 281
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	159, 484
RsaNI	GTAC	2 cut(s)	158, 483
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	188, 327, 1135
SatI	GCNGC	3 cut(s)	54, 292, 614
Sau3AI	GATC	6 cut(s)	5, 62, 281, 365, 1020, 1103
Sau96I	GGNCC	1 cut(s)	904
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	3 cut(s)	382, 403, 467
ScrFI	CCNGG	7 cut(s)	249, 583, 599, 741, 795, 984, 1067
SduI	GDGCHC	2 cut(s)	508, 626
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	2 cut(s)	638, 850
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	527
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	3 cut(s)	307, 496, 617
SmoI	CTYRAG	3 cut(s)	307, 496, 617
Sse9I	AATT	6 cut(s)	535, 716, 816, 921, 927, 963
SsiI	CCGC	1 cut(s)	522
SspDI	GGCGCC	1 cut(s)	525
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	7 cut(s)	247, 581, 597, 739, 793, 982, 1065
StyI	CCWWGG	2 cut(s)	627, 1009
TaaI	ACNGT	1 cut(s)	883
TaiI	ACGT	2 cut(s)	391, 1064
TaqI	TCGA	5 cut(s)	287, 315, 533, 606, 618
TasI	AATT	6 cut(s)	535, 716, 816, 921, 927, 963
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	237, 266
Tru1I	TTAA	3 cut(s)	188, 327, 1135
Tru9I	TTAA	3 cut(s)	188, 327, 1135
TseFI	GTSAC	3 cut(s)	374, 667, 1057
TseI	GCWGC	3 cut(s)	53, 291, 613
Tsp45I	GTSAC	3 cut(s)	374, 667, 1057
TspDTI	ATGAA	5 cut(s)	126, 144, 224, 677, 1103
Van91I	CCANNNNNTGG	1 cut(s)	78
VneI	GTGCAC	2 cut(s)	504, 622
XceI	RCATGY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.