Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013997

Physical Location & Seq

Genomic Coordinates Forward (+)

41026401 .. 41029102

Gene Structure 2702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G493700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCGCCCTCTTCGCAACCTCTATAGAGCAGCATATAGATCCATTGTCAAAAAATTGCGCCACGACAAGAAGAAATCGTCTCCAGATCGGGAAGCCAAAGTAGACCAAATTGGAACCTCTATAACCAGCGATGTAATCTTTGAGGAAGTCGGTGATGATACACCAAAAGCAGAAAAGAAAACCATGCATGGATTTCATAGCTTTAGATGCATTAGCCTGCAAAGAATGCGACGCGACCATGATACTCCAAGCCCTAAAGCTAAAGGTCACTTCAAGCAATCAAGCTTGGATAATTTCTTTAACATGCATTGTCATTTCTCAAAAAGCTCTAGCCGAAGGAGTCACACCCCCTCATCCTCTCTCAAGAAAACTAAGAGCCGGAAAAGCTGGCCGGATTCCATACCCTCCCCGTCAACCCCCAAGGCCGCCACGTGTACTAAAAGCGCCGACTCCACGCCGGCCCATCCCTCCCTCTCCAAATGTGAAAGCCGGAAGACCCCCATCATGTTTTCCAACTCGTCTGGGATGTTGAAACCCCAAGCCGTTGAGAAGCAGCTTGAGTGCACCTTAGAGGAGTTGTGTTTTGGATGCCAGAAGAAGATGAAGGTCACAAGGGCTATCGTCAAAGACACCGGGCAAATGGTTGAAGAAGAGGAAGTGGTAACAATAAATGTGAAGCCAGGATGGAAAAAAGGAACAAAGATTACATTTGAAGGATTGGGAAATGAGATACCAGGGGCCTACCCAGCAGACATAGTTTTTGTGATTGCTGAGAAAAGACACCCTTTGTTTAGAAGAGATGGGGATGATTTGGAGTTGGCTCTAGAGATCCCATTGGTAAAGGCTCTCACTGGCTGCATCATCTCAATCCCTTTGCTGGGTGGAGACCAAATGAAATTGACCATTGATGACATCATATATCCTGGCTATGAGAAGGTCATATCGGAGCAAGGCATGGCAATCTCAAAAGATGAAGGAAAGAGGGCAAATTTGAAGCTCACTTTTCTGGTTGACTTTCCTATTTTCCTAACAGATGAGCAAAGATCAGATATTCTCAATATTTTAGAGGATTCTTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

361

Amino Acids

40.5

Weight (kDa)

9.13

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44160
fragaria_vesca	FvH4_2g27360
malus_domestica	MD00G1029000.v1.1 MD15G1345600.v1.1
prunus_persica	Prupe.1G493700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296201
rosa_laevigata	RLG00000011718
rosa_multiflora	Rmu_sc0028042.1_g000003 Rmu_sc0035469.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171750 Rroxscaffold_7G00178310
rosa_rugosa	Rorug06G0259400
rosa_samantha	Rh6AG371600 Rh6BG379500 Rh6CG384800 Rh6DG372000
rosa_wichuraiana	Rw6G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	33, 823
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	988
AcvI	CACGTG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	877, 878
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	274, 532, 647, 713, 994
AjnI	CCWGG	3 cut(s)	679, 733, 922
AluBI	AGCT	7 cut(s)	201, 260, 285, 327, 387, 556, 997
AluI	AGCT	7 cut(s)	201, 260, 285, 327, 387, 556, 997
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	2 cut(s)	84, 879
Alw44I	GTGCAC	1 cut(s)	562
AlwI	GGATC	2 cut(s)	33, 823
AoxI	GGCC	4 cut(s)	389, 423, 459, 738
ApaLI	GTGCAC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	29, 553, 855
ApoI	RAATTY	1 cut(s)	988
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	3 cut(s)	6, 60, 446
AspS9I	GGNCC	2 cut(s)	460, 738
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	566
BbrPI	CACGTG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	41, 565, 842
BccI	CCATC	4 cut(s)	471, 509, 678, 794
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	3 cut(s)	681, 735, 924
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	84, 879
BfaI	CTAG	2 cut(s)	330, 824
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	4 cut(s)	30, 426, 554, 856
BlsI	GCNGC	4 cut(s)	31, 427, 555, 857
Bme1390I	CCNGG	4 cut(s)	634, 681, 735, 924
BmgT120I	GGNCC	2 cut(s)	460, 738
BmiI	GGNNCC	2 cut(s)	115, 739
BmrFI	CCNGG	4 cut(s)	634, 681, 735, 924
BmsI	GCATC	3 cut(s)	197, 578, 867
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	347, 578
BpuMI	CCSGG	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	420, 734
Bsc4I	CCNNNNNNNGG	2 cut(s)	877, 878
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	681, 735, 924
BseDI	CCNNGG	2 cut(s)	420, 734
BseGI	GGATG	6 cut(s)	353, 463, 531, 593, 689, 811
BseLI	CCNNNNNNNGG	2 cut(s)	877, 878
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	41, 565, 842
BseYI	CCCAGC	2 cut(s)	745, 877
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	391, 425, 461, 740
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	5 cut(s)	379, 392, 458, 490, 633
BslI	CCNNNNNNNGG	2 cut(s)	877, 878
BsmAI	GTCTC	2 cut(s)	84, 879
BsmBI	CGTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	391, 425, 461, 740
Bso31I	GGTCTC	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	38, 85, 828, 1043
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	4 cut(s)	391, 425, 461, 740
BspCNI	CTCAG	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	115, 739
BspPI	GGATC	2 cut(s)	33, 823
BspTNI	GGTCTC	1 cut(s)	879
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	420, 734
BssMI	GATC	4 cut(s)	38, 85, 828, 1043
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	681, 735, 924
Bst6I	CTCTTC	3 cut(s)	15, 645, 790
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	218, 389, 459
BstDEI	CTNAG	3 cut(s)	372, 568, 771
BstF5I	GGATG	6 cut(s)	353, 463, 531, 593, 689, 811
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	3 cut(s)	6, 60, 446
BstKTI	GATC	4 cut(s)	41, 88, 831, 1046
BstMAI	GTCTC	2 cut(s)	84, 879
BstMBI	GATC	4 cut(s)	38, 85, 828, 1043
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 207, 226, 384, 746
BstNI	CCWGG	3 cut(s)	681, 735, 924
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	4 cut(s)	632, 679, 733, 922
BstSFI	CTRYAG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	566
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	41, 565, 842
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	38, 828
BstYI	RGATCY	2 cut(s)	38, 828
BsuRI	GGCC	4 cut(s)	391, 425, 461, 740
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	6 cut(s)	353, 463, 531, 593, 689, 811
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	3 cut(s)	218, 389, 459
CfoI	GCGC	3 cut(s)	6, 60, 446
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	460, 738
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	6 cut(s)	184, 188, 239, 304, 505, 955
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	372, 568, 771
DpnI	GATC	4 cut(s)	40, 87, 830, 1045
DpnII	GATC	4 cut(s)	38, 85, 828, 1043
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	3 cut(s)	15, 645, 790
EarI	CTCTTC	3 cut(s)	15, 645, 790
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	879
Eco72I	CACGTG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRII	CCWGG	3 cut(s)	679, 733, 922
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	3 cut(s)	189, 212, 309
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	6 cut(s)	187, 191, 242, 307, 508, 958
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FatI	CATG	6 cut(s)	183, 187, 238, 303, 504, 954
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	30, 426, 554, 856
FokI	GGATG	6 cut(s)	340, 450, 538, 600, 696, 818
Fsp4HI	GCNGC	4 cut(s)	30, 426, 554, 856
FspBI	CTAG	2 cut(s)	330, 824
GlaI	GCGC	3 cut(s)	5, 59, 445
GluI	GCNGC	4 cut(s)	30, 426, 554, 856
GsaI	CCCAGC	2 cut(s)	749, 881
GsuI	CTGGAG	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	391, 425, 461, 740
HapII	CCGG	5 cut(s)	379, 392, 458, 490, 633
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	3 cut(s)	6, 60, 446
Hin1II	CATG	6 cut(s)	187, 191, 242, 307, 508, 958
Hin6I	GCGC	3 cut(s)	4, 58, 444
HinP1I	GCGC	3 cut(s)	4, 58, 444
HincII	GTYRAC	2 cut(s)	414, 1012
HindII	GTYRAC	2 cut(s)	414, 1012
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	4 cut(s)	340, 395, 449, 1070
HpaII	CCGG	5 cut(s)	379, 392, 458, 490, 633
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	5 cut(s)	103, 414, 435, 564, 1012
Hpy188I	TCNGA	2 cut(s)	946, 1048
Hpy188III	TCNNGA	4 cut(s)	83, 89, 364, 824
Hpy8I	GTNNAC	5 cut(s)	103, 414, 435, 564, 1012
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	5 cut(s)	330, 598, 707, 928, 968
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	6 cut(s)	187, 210, 220, 307, 564, 858
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 207, 226, 384, 746
HpyF3I	CTNAG	3 cut(s)	372, 568, 771
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	6 cut(s)	187, 191, 242, 307, 508, 958
HspAI	GCGC	3 cut(s)	4, 58, 444
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	38, 85, 828, 1043
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	3 cut(s)	41, 565, 842
LweI	GCATC	3 cut(s)	197, 578, 867
MaeI	CTAG	2 cut(s)	330, 824
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	4 cut(s)	266, 341, 607, 661
MalI	GATC	4 cut(s)	40, 87, 830, 1045
MboI	GATC	4 cut(s)	38, 85, 828, 1043
MboII	GAAGA	7 cut(s)	82, 505, 607, 610, 659, 662, 807
MflI	RGATCY	2 cut(s)	38, 828
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	5 cut(s)	53, 108, 292, 896, 988
MlyI	GAGTC	2 cut(s)	349, 443
MmeI	TCCRAC	1 cut(s)	537
Mph1103I	ATGCAT	3 cut(s)	189, 212, 309
MroNI	GCCGGC	1 cut(s)	457
MseI	TTAA	1 cut(s)	300
MspI	CCGG	5 cut(s)	379, 392, 458, 490, 633
MspR9I	CCNGG	4 cut(s)	634, 681, 735, 924
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	3 cut(s)	681, 735, 924
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	12, 207, 226, 384, 746
NaeI	GCCGGC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	4 cut(s)	38, 85, 828, 1043
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	6 cut(s)	187, 191, 242, 307, 508, 958
NlaIV	GGNNCC	2 cut(s)	115, 739
NmuCI	GTSAC	3 cut(s)	266, 341, 607
NsiI	ATGCAT	3 cut(s)	189, 212, 309
NspI	RCATGY	1 cut(s)	307
PctI	GAATGC	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	395, 1070
PkrI	GCNGC	4 cut(s)	31, 427, 555, 857
PleI	GAGTC	2 cut(s)	348, 443
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	2 cut(s)	348, 443
Ppu21I	YACGTR	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	679, 733, 922
PspCI	CACGTG	1 cut(s)	432
PspFI	CCCAGC	2 cut(s)	745, 877
PspGI	CCWGG	3 cut(s)	679, 733, 922
PspN4I	GGNNCC	2 cut(s)	115, 739
PspPI	GGNCC	2 cut(s)	460, 738
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
PsuI	RGATCY	2 cut(s)	38, 828
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	30, 426, 554, 856
Sau3AI	GATC	4 cut(s)	38, 85, 828, 1043
Sau96I	GGNCC	2 cut(s)	460, 738
SchI	GAGTC	2 cut(s)	349, 443
ScrFI	CCNGG	4 cut(s)	634, 681, 735, 924
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	3 cut(s)	197, 578, 867
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	362, 557
SmoI	CTYRAG	2 cut(s)	362, 557
Sse9I	AATT	5 cut(s)	53, 108, 292, 896, 988
SsiI	CCGC	1 cut(s)	426
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	2 cut(s)	330, 824
StyD4I	CCNGG	4 cut(s)	632, 679, 733, 922
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	1 cut(s)	434
TasI	AATT	5 cut(s)	53, 108, 292, 896, 988
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	395, 1070
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	3 cut(s)	266, 341, 607
TseI	GCWGC	3 cut(s)	29, 553, 855
Tsp45I	GTSAC	3 cut(s)	266, 341, 607
TspDTI	ATGAA	4 cut(s)	185, 617, 908, 987
TspRI	CASTG	1 cut(s)	856
VneI	GTGCAC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	988
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	330, 824
Zsp2I	ATGCAT	3 cut(s)	189, 212, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.