Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013997

Physical Location & Seq

Genomic Coordinates Reverse (-)

18053201 .. 18054032

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTTCGCAGTCATCCGGGATGTTGAAACCCCCGGCCATCGAGAAGCAGCTCGAGTGCACCTTGGAGGAGCTGTGCTTTGGATGCAACAAGAAGATGAAGGTTACGAGGGTTGTTGTCAAAGAAACCGGGCAAATGGCACAAGAAGAGGAATTGGTAACGATAAATGTGAAGCCGGGATGGAAGAAAGGAACGAAGATTACATTTGAAGGATTGGGAAATGAGAGACCCGGTGCATACCCAGCTGACATAATTTTTGTGATAGCTGAGAAGAGGCATCATTTGTTTGTAAGAGAAGGAGATGACTTGGAGTTGACGGTTGAAATCCCATTGATACAGGCCCTTACTGGTTGCACAATTTCAATTCCTCTTCTGGGTGGAGAAAATACGACATTGACAATTGAAGACATCATATACCCCGGCTACGAAAAGACCATTCCAGACCAAGGTATGCCGATCCCTAAGGTGGAAGGGAAGAGAGGAAATCTGAAAGTCACGTTCCTGGTTGAGTTCCCTACTTCTCTAACACACGAGCAAAGATCAGATGTTCATACTATTTTAGAGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

190

Amino Acids

21.18

Weight (kDa)

5.22

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	14 - 172	2.6e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44160
fragaria_vesca	FvH4_2g27360
malus_domestica	MD00G1029000.v1.1 MD15G1345600.v1.1
prunus_persica	Prupe.1G493700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296201
rosa_laevigata	RLG00000011718
rosa_multiflora	Rmu_sc0028042.1_g000003 Rmu_sc0035469.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171750 Rroxscaffold_7G00178310
rosa_rugosa	Rorug06G0259400
rosa_samantha	Rh6AG371600 Rh6BG379500 Rh6CG384800 Rh6DG372000
rosa_wichuraiana	Rw6G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
AgsI	TTSAA	5 cut(s)	28, 209, 323, 363, 404
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	52, 73, 245, 266
AluI	AGCT	4 cut(s)	52, 73, 245, 266
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	36, 339
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
AvaI	CYCGRG	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	47, 174
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
BmsI	GCATC	2 cut(s)	74, 286
BpiI	GAAGAC	1 cut(s)	411
BpuMI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	33, 63, 418, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 446, 466
Bse1I	ACTGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	33, 63, 418, 445
BseGI	GGATG	4 cut(s)	14, 27, 89, 185
BseLI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	38, 341
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
BslI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	38, 341
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	456, 539
BspANI	GGCC	2 cut(s)	38, 341
BspCNI	CTCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	33, 63, 418, 445
BssMI	GATC	2 cut(s)	456, 539
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	2 cut(s)	63, 445
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	4 cut(s)	141, 266, 375, 470
BstDEI	CTNAG	2 cut(s)	267, 462
BstF5I	GGATG	4 cut(s)	14, 27, 89, 185
BstKTI	GATC	2 cut(s)	459, 542
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	456, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 242
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	7 cut(s)	17, 33, 128, 175, 229, 418, 501
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	38, 341
BtsCI	GGATG	4 cut(s)	14, 27, 89, 185
Cfr13I	GGNCC	1 cut(s)	340
CviJI	RGCY	8 cut(s)	38, 52, 73, 175, 245, 266, 341, 423
CviKI_1	RGCY	8 cut(s)	38, 52, 73, 175, 245, 266, 341, 423
DdeI	CTNAG	2 cut(s)	267, 462
DpnI	GATC	2 cut(s)	458, 541
DpnII	GATC	2 cut(s)	456, 539
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	4 cut(s)	141, 266, 375, 470
EarI	CTCTTC	4 cut(s)	141, 266, 375, 470
Eco130I	CCWWGG	2 cut(s)	63, 445
Eco31I	GGTCTC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	63, 445
ErhI	CCWWGG	2 cut(s)	63, 445
FaiI	YATR	6 cut(s)	238, 251, 413, 415, 452, 552
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	3 cut(s)	34, 96, 192
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	38, 341
HapII	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HpaII	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
Hpy166II	GTNNAC	2 cut(s)	60, 315
Hpy188I	TCNGA	2 cut(s)	489, 544
Hpy188III	TCNNGA	2 cut(s)	43, 440
Hpy8I	GTNNAC	2 cut(s)	60, 315
HpyAV	CCTTC	4 cut(s)	94, 203, 290, 464
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	60, 87, 236, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 242
HpyF3I	CTNAG	2 cut(s)	267, 462
HpySE526I	ACGT	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	456, 539
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	74, 286
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	3 cut(s)	103, 157, 493
MalI	GATC	2 cut(s)	458, 541
MboI	GATC	2 cut(s)	456, 539
MboII	GAAGA	8 cut(s)	106, 158, 196, 208, 283, 362, 416, 487
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	152, 252, 357, 363, 399
MnlI	CCTC	7 cut(s)	61, 102, 142, 267, 378, 473, 556
MseI	TTAA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
MspR9I	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	84, 242
NciI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
NdeII	GATC	2 cut(s)	456, 539
NmuCI	GTSAC	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	53
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PvuII	CAGCTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	456, 539
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	9 cut(s)	54, 65, 75, 105, 247, 268, 451, 468, 500
SfaNI	GCATC	2 cut(s)	74, 286
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	152, 252, 357, 363, 399
StyD4I	CCNGG	7 cut(s)	17, 33, 128, 175, 229, 418, 501
StyI	CCWWGG	2 cut(s)	63, 445
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	42, 54
TasI	AATT	5 cut(s)	152, 252, 357, 363, 399
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	113, 539
VneI	GTGCAC	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.