Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013997

Physical Location & Seq

Genomic Coordinates Forward (+)

12039550 .. 12040383

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTTCGCAGTCATCCGGGATGTTGAAACCCCCGGCCATCGAGAAGCAGCTCGAGTGCACCTTGGAGGAGCTGTGCTTTGGATGCAACAAGAAGATGAAGGTTACGAGGGTTGTTGTCAAAGAAACCGGGCAAATGGCACAAGAAGAGGAATTGGTAACGATAAATGTGAAGCCGGGATGGAAGAAAGGAACGAAGATTACATTTGAAGGATTGGGAAATGAGAGACCCGGTGCATACCCAGCTGACATAATTTTTGTGATAGCTGAGAAGAGGCATCATTTGTTTGTAAGAGAAGGAGATGACTTGGAGTTGACGGTTGAAATCCCATTGATACAGGCCCTTACTGGTTGCACAATTTCAATTCCTCTTCTGGGTGGAGAAAATACGACATTGACAATTGAAGACATCATATACCCCGGCTACGAAAAGACCATTCCAGACCAAGGTATGCCGATCCCTAAGGTGGAAGGGAAGAGAGGAAATCTGAAAGTCACGTTCCTGGTTGAGTTCCCTACTTCTCTAACACACGAGCAAAGATCAGATGTTCATACTATTTTAGAGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

190

Amino Acids

21.18

Weight (kDa)

5.22

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	14 - 172	2.6e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44160
fragaria_vesca	FvH4_2g27360
malus_domestica	MD00G1029000.v1.1 MD15G1345600.v1.1
prunus_persica	Prupe.1G493700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296201
rosa_laevigata	RLG00000011718
rosa_multiflora	Rmu_sc0028042.1_g000003 Rmu_sc0035469.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171750 Rroxscaffold_7G00178310
rosa_rugosa	Rorug06G0259400
rosa_samantha	Rh6AG371600 Rh6BG379500 Rh6CG384800 Rh6DG372000
rosa_wichuraiana	Rw6G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
AgsI	TTSAA	5 cut(s)	28, 209, 323, 363, 404
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	52, 73, 245, 266
AluI	AGCT	4 cut(s)	52, 73, 245, 266
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	36, 339
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
AvaI	CYCGRG	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	47, 174
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
BmsI	GCATC	2 cut(s)	74, 286
BpiI	GAAGAC	1 cut(s)	411
BpuMI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	33, 63, 418, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 446, 466
Bse1I	ACTGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	33, 63, 418, 445
BseGI	GGATG	4 cut(s)	14, 27, 89, 185
BseLI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	38, 341
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
BslI	CCNNNNNNNGG	3 cut(s)	374, 446, 466
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	38, 341
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	456, 539
BspANI	GGCC	2 cut(s)	38, 341
BspCNI	CTCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	33, 63, 418, 445
BssMI	GATC	2 cut(s)	456, 539
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	2 cut(s)	63, 445
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	4 cut(s)	141, 266, 375, 470
BstDEI	CTNAG	2 cut(s)	267, 462
BstF5I	GGATG	4 cut(s)	14, 27, 89, 185
BstKTI	GATC	2 cut(s)	459, 542
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	456, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 242
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	7 cut(s)	17, 33, 128, 175, 229, 418, 501
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	38, 341
BtsCI	GGATG	4 cut(s)	14, 27, 89, 185
Cfr13I	GGNCC	1 cut(s)	340
CviJI	RGCY	8 cut(s)	38, 52, 73, 175, 245, 266, 341, 423
CviKI_1	RGCY	8 cut(s)	38, 52, 73, 175, 245, 266, 341, 423
DdeI	CTNAG	2 cut(s)	267, 462
DpnI	GATC	2 cut(s)	458, 541
DpnII	GATC	2 cut(s)	456, 539
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	4 cut(s)	141, 266, 375, 470
EarI	CTCTTC	4 cut(s)	141, 266, 375, 470
Eco130I	CCWWGG	2 cut(s)	63, 445
Eco31I	GGTCTC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	63, 445
ErhI	CCWWGG	2 cut(s)	63, 445
FaiI	YATR	6 cut(s)	238, 251, 413, 415, 452, 552
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	3 cut(s)	34, 96, 192
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	38, 341
HapII	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HpaII	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
Hpy166II	GTNNAC	2 cut(s)	60, 315
Hpy188I	TCNGA	2 cut(s)	489, 544
Hpy188III	TCNNGA	2 cut(s)	43, 440
Hpy8I	GTNNAC	2 cut(s)	60, 315
HpyAV	CCTTC	4 cut(s)	94, 203, 290, 464
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	60, 87, 236, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 242
HpyF3I	CTNAG	2 cut(s)	267, 462
HpySE526I	ACGT	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	456, 539
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	74, 286
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	3 cut(s)	103, 157, 493
MalI	GATC	2 cut(s)	458, 541
MboI	GATC	2 cut(s)	456, 539
MboII	GAAGA	8 cut(s)	106, 158, 196, 208, 283, 362, 416, 487
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	152, 252, 357, 363, 399
MnlI	CCTC	7 cut(s)	61, 102, 142, 267, 378, 473, 556
MseI	TTAA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	6 cut(s)	18, 35, 129, 176, 231, 420
MspR9I	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	84, 242
NciI	CCSGG	6 cut(s)	19, 35, 130, 177, 231, 420
NdeII	GATC	2 cut(s)	456, 539
NmuCI	GTSAC	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	53
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PvuII	CAGCTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	456, 539
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	7 cut(s)	19, 35, 130, 177, 231, 420, 503
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	9 cut(s)	54, 65, 75, 105, 247, 268, 451, 468, 500
SfaNI	GCATC	2 cut(s)	74, 286
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	152, 252, 357, 363, 399
StyD4I	CCNGG	7 cut(s)	17, 33, 128, 175, 229, 418, 501
StyI	CCWWGG	2 cut(s)	63, 445
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	42, 54
TasI	AATT	5 cut(s)	152, 252, 357, 363, 399
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	113, 539
VneI	GTGCAC	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.