Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Forward (+)

17328813 .. 17330536

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47271.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAAGCTTTTGTGAGAGGACTATTAGCAAGAGCTAATGAGGTCCCAAAGATTCATCAGAGGAAGGTATCGGCCGGTTTTGGTTGCTTAACTTCGCCTCCGCCGCCGGAGAAAGGGTTGGAGAATCTGACGGTGGCGGATGTGCTCTCCACGAAGGATACTGACATTGATACGTGGATCTCGTGCCGTACGAATGACACTGTTTCTGACGCTGTTAAAAATATGGCAAAGCATAATATTGGATCGTTGGTCGTGTTAGAACCTGGAGACCAACAATATATAGCAGGAATTGTCACAGAGAGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGAGAAGTTATGACAGACGAGAGCAAGTTGGTTACTGTTTCATCTGGGACAAACATAATCAAAGCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATAGTGGGACTGATCTCTATGGTTGATGTGGTTAAAGCCATTGTGGACCATCAAAATGGAGAGCTCAAACGTTTGAATGAATTCATCAAAGGAGACTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

193

Amino Acids

21.13

Weight (kDa)

8.47

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	60 - 108	3.9e-08	CBS domain
CBS	PF00571	119 - 174	6.4e-13	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	101, 104, 137
AclI	AACGTT	1 cut(s)	547
AclWI	GGATC	2 cut(s)	185, 250
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	557
AfaI	GTAC	2 cut(s)	190, 459
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	5 cut(s)	8, 35, 346, 430, 541
AluI	AGCT	5 cut(s)	8, 35, 346, 430, 541
Alw21I	GWGCWC	2 cut(s)	147, 543
Alw26I	GTCTC	3 cut(s)	261, 297, 564
AlwI	GGATC	2 cut(s)	185, 250
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	557
AsiGI	ACCGGT	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	557
AspS9I	GGNCC	2 cut(s)	43, 523
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	43, 523
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	147, 543
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	534
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	261, 297, 564
BfaI	CTAG	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	104, 428
BlsI	GCNGC	2 cut(s)	105, 429
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	2 cut(s)	43, 523
BmgT120I	GGNCC	2 cut(s)	43, 523
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 101, 112, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	2 cut(s)	74, 460
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	429
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	147, 543
BsiSI	CCGG	3 cut(s)	75, 107, 461
BsiWI	CGTACG	1 cut(s)	188
BslFI	GGGAC	3 cut(s)	29, 418, 498
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	3 cut(s)	261, 297, 564
BsmFI	GGGAC	3 cut(s)	29, 418, 498
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	147, 543
Bsp143I	GATC	5 cut(s)	177, 242, 318, 335, 489
BspACI	CCGC	3 cut(s)	101, 104, 137
BspANI	GGCC	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	185, 250
BspTNI	GGTCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	2 cut(s)	74, 460
BssAI	RCCGGY	2 cut(s)	74, 460
BssMI	GATC	5 cut(s)	177, 242, 318, 335, 489
BssSI	CACGAG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	133, 202, 394
BstBAI	YACGTR	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	5 cut(s)	180, 245, 321, 338, 492
BstMAI	GTCTC	3 cut(s)	261, 297, 564
BstMBI	GATC	5 cut(s)	177, 242, 318, 335, 489
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	198
Cfr10I	RCCGGY	2 cut(s)	74, 460
Cfr13I	GGNCC	2 cut(s)	43, 523
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	189, 458
CspAI	ACCGGT	1 cut(s)	460
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	7 cut(s)	8, 35, 74, 346, 430, 515, 541
CviKI_1	RGCY	7 cut(s)	8, 35, 74, 346, 430, 515, 541
CviQI	GTAC	2 cut(s)	189, 458
DpnI	GATC	5 cut(s)	179, 244, 320, 337, 491
DpnII	GATC	5 cut(s)	177, 242, 318, 335, 489
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EciI	GGCGGA	2 cut(s)	90, 152
Ecl136II	GAGCTC	1 cut(s)	541
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	43, 523
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	1 cut(s)	458
FaqI	GGGAC	3 cut(s)	29, 418, 498
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	104, 428
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	104, 428
FspBI	CTAG	1 cut(s)	580
GluI	GCNGC	2 cut(s)	104, 428
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	75, 107, 461
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	458
HindIII	AAGCTT	2 cut(s)	6, 344
HinfI	GANTC	3 cut(s)	52, 124, 442
HpaII	CCGG	3 cut(s)	75, 107, 461
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	60, 129, 208, 439
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	58, 148
HpyCH4III	ACNGT	3 cut(s)	133, 202, 394
HpyCH4IV	ACGT	2 cut(s)	173, 547
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpySE526I	ACGT	2 cut(s)	173, 547
Hsp92II	CATG	1 cut(s)	458
Kzo9I	GATC	5 cut(s)	177, 242, 318, 335, 489
LpnPI	CCDG	8 cut(s)	88, 120, 249, 270, 276, 315, 387, 474
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	580
MaeII	ACGT	2 cut(s)	173, 547
MaeIII	GTNAC	2 cut(s)	292, 388
MalI	GATC	5 cut(s)	179, 244, 320, 337, 491
MboI	GATC	5 cut(s)	177, 242, 318, 335, 489
MboII	GAAGA	1 cut(s)	345
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	147, 543
MluCI	AATT	2 cut(s)	288, 557
MmeI	TCCRAC	2 cut(s)	99, 337
MnlI	CCTC	4 cut(s)	11, 34, 54, 108
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	3 cut(s)	89, 216, 510
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	3 cut(s)	75, 107, 461
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	5 cut(s)	177, 242, 318, 335, 489
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 188
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	3 cut(s)	52, 124, 442
Pfl23II	CGTACG	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	105, 429
Ppu21I	YACGTR	1 cut(s)	174
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	543
Psp1406I	AACGTT	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspLI	CGTACG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	43, 523
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	190, 459
RsaNI	GTAC	2 cut(s)	189, 458
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	3 cut(s)	89, 216, 510
SatI	GCNGC	2 cut(s)	104, 428
Sau3AI	GATC	5 cut(s)	177, 242, 318, 335, 489
Sau96I	GGNCC	2 cut(s)	43, 523
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	147, 543
SinI	GGWCC	2 cut(s)	43, 523
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	2 cut(s)	288, 557
SsiI	CCGC	3 cut(s)	101, 104, 137
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	580
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	133, 202, 394
TaiI	ACGT	2 cut(s)	176, 550
TasI	AATT	2 cut(s)	288, 557
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	3 cut(s)	52, 124, 442
Tru1I	TTAA	3 cut(s)	89, 216, 510
Tru9I	TTAA	3 cut(s)	89, 216, 510
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	6 cut(s)	17, 44, 326, 387, 550, 570
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	43, 523
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.