Rh6BG422700

CBS domain-containing protein CBSX3

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
64550112 .. 64550399
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG422700.1

Sequence Viewer

Length: 288 bp
ATGCAAGGAATTGCTAGGGCTGTGAGATCATGCCATGAGATACTCAAAGCTGCAGCTTTGGAGCATTCCTGCAGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCTCCAGCCCTAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACTGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATGTACGTTCGAGTCTCCTGTCAATGTATTGTATTCTGTAG

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

8.71

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47271
fragaria_vesca FvH4_2g39650
malus_domestica MD08G1030200.v1.1
prunus_persica Prupe.1G377900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301241
rosa_laevigata RLG00000011268
rosa_multiflora Rmu_sc0013354.1_g000011
rosa_roxburghii Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa Rorug06G0302600
rosa_samantha Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana Rw6G036020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AfaI GTAC 2 cut(s) 171, 252
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 2 cut(s) 50, 56
AluI AGCT 2 cut(s) 50, 56
Alw26I GTCTC 2 cut(s) 70, 266
ApeKI GCWGC 2 cut(s) 50, 53
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 37, 65
BcoDI GTCTC 2 cut(s) 70, 266
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 3 cut(s) 51, 70, 284
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 37, 65
BshNI GGYRCC 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 70, 266
BsmBI CGTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 2 cut(s) 55, 74
BspT107I GGYRCC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 160, 229
BstEII GGTNACC 1 cut(s) 121
BstKTI GATC 1 cut(s) 29
BstMAI GTCTC 2 cut(s) 70, 266
BstMBI GATC 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 121
BstSFI CTRYAG 3 cut(s) 51, 70, 284
BstV1I GCAGC 2 cut(s) 37, 65
BtsIMutI CAGTG 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 170, 251
CviAII CATG 2 cut(s) 30, 35
CviJI RGCY 5 cut(s) 20, 50, 56, 134, 205
CviKI_1 RGCY 5 cut(s) 20, 50, 56, 134, 205
CviQI GTAC 2 cut(s) 170, 251
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 2 cut(s) 33, 38
FaiI YATR 3 cut(s) 31, 36, 242
FatI CATG 2 cut(s) 29, 34
Fnu4HI GCNGC 2 cut(s) 51, 54
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 1 cut(s) 15
GluI GCNGC 2 cut(s) 51, 54
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 2 cut(s) 33, 38
HinfI GANTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 160, 229
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 4, 53, 72
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 33, 38
Kzo9I GATC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 58, 82, 144, 180, 193, 278
Lsp1109I GCAGC 2 cut(s) 37, 65
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 121, 154
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 2 cut(s) 176, 200
MluCI AATT 2 cut(s) 9, 81
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 1 cut(s) 136
MslI CAYNNNNRTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 64
NdeII GATC 1 cut(s) 26
NlaIII CATG 2 cut(s) 33, 38
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 154
PctI GAATGC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 52, 55
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 2 cut(s) 55, 74
RsaI GTAC 2 cut(s) 171, 252
RsaNI GTAC 2 cut(s) 170, 251
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 197
SbfI CCTGCAGG 1 cut(s) 74
SchI GAGTC 1 cut(s) 268
SdaI CCTGCAGG 1 cut(s) 74
SetI ASST 7 cut(s) 52, 58, 101, 106, 128, 202, 256
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 3 cut(s) 51, 70, 284
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse8387I CCTGCAGG 1 cut(s) 74
Sse9I AATT 2 cut(s) 9, 81
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 160, 229
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 9, 81
TatI WGTACW 1 cut(s) 169
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 50, 53
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 197
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.