Rroxscaffold_7G00166990

CBS domain-containing protein CBSX3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015428
Physical Location & Seq
Forward (+)
8308868 .. 8309925
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166990.1

Sequence Viewer

Length: 480 bp
ATGCAAGGGATTGCTAGGGCTGTGAGATCATGCCAGGTTACTCAAAGCTGCAGCTTGGAGCATTCCCGCGGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCAATAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAGAGTTGAAGAAACTGGACCTTGGCTCTGGTGCCGCAAATGACACTGTTATTGATGCTATAAAAAATAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCACGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGCTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAGGTGAAGCAACTAAATGAGTACATTAGAGGAGGCCCTGTGAAGCTCTTAGCAATTTCATTTATGTTCCTTAAATCACTGTAA

Protein Analysis

159

Amino Acids

17.52

Weight (kDa)

9.27

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 78 - 127 1.5e-13 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47271
fragaria_vesca FvH4_2g39650
malus_domestica MD08G1030200.v1.1
prunus_persica Prupe.1G377900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301241
rosa_laevigata RLG00000011268
rosa_multiflora Rmu_sc0013354.1_g000011
rosa_roxburghii Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa Rorug06G0302600
rosa_samantha Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana Rw6G036020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccII CGCG 1 cut(s) 69
AciI CCGC 4 cut(s) 67, 69, 204, 393
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 3 cut(s) 162, 318, 419
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 2 cut(s) 105, 178
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 48, 54, 337, 442
AluI AGCT 4 cut(s) 48, 54, 337, 442
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 3 cut(s) 48, 51, 385
ApoI RAATTY 1 cut(s) 306
AseI ATTAAT 1 cut(s) 245
AsiGI ACCGGT 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 187, 431
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 35, 63, 397
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 15, 338
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 4 cut(s) 49, 52, 204, 386
BlsI GCNGC 4 cut(s) 50, 53, 205, 387
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 187, 431
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 214, 352
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 67, 190
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 67, 190
BseJI GATNNNNATC 1 cut(s) 353
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 35, 63, 397
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 319
BsiSI CCGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 26, 354
BspACI CCGC 4 cut(s) 67, 69, 204, 393
BspANI GGCC 1 cut(s) 432
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 67, 190
BssMI GATC 2 cut(s) 26, 354
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 4 cut(s) 151, 217, 253, 477
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 445
BstDSI CCRYGG 1 cut(s) 67
BstEII GGTNACC 1 cut(s) 118
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 2 cut(s) 29, 357
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 26, 354
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 35, 63, 397
BsuRI GGCC 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 213, 258, 473
Cac8I GCNNGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 187, 431
Cfr42I CCGCGG 1 cut(s) 70
Csp6I GTAC 3 cut(s) 161, 317, 418
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 2 cut(s) 30, 346
CviJI RGCY 7 cut(s) 20, 48, 54, 195, 337, 432, 442
CviKI_1 RGCY 7 cut(s) 20, 48, 54, 195, 337, 432, 442
CviQI GTAC 3 cut(s) 161, 317, 418
DdeI CTNAG 1 cut(s) 445
DpnI GATC 2 cut(s) 28, 356
DpnII GATC 2 cut(s) 26, 354
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 2 cut(s) 33, 349
FaiI YATR 6 cut(s) 31, 230, 293, 326, 347, 461
FatI CATG 2 cut(s) 29, 345
FauI CCCGC 3 cut(s) 62, 74, 386
Fnu4HI GCNGC 4 cut(s) 49, 52, 204, 386
Fsp4HI GCNGC 4 cut(s) 49, 52, 204, 386
FspBI CTAG 2 cut(s) 15, 338
GluI GCNGC 4 cut(s) 49, 52, 204, 386
HaeIII GGCC 1 cut(s) 432
HapII CCGG 1 cut(s) 320
Hin1II CATG 2 cut(s) 33, 349
HinfI GANTC 1 cut(s) 301
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 262
HpyCH4III ACNGT 4 cut(s) 151, 217, 253, 477
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 3 cut(s) 4, 51, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 445
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 33, 349
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 26, 354
LmnI GCTCC 2 cut(s) 58, 382
LpnPI CCDG 7 cut(s) 20, 47, 170, 183, 263, 333, 447
Lsp1109I GCAGC 3 cut(s) 35, 63, 397
LweI GCATC 2 cut(s) 214, 352
MaeI CTAG 2 cut(s) 15, 338
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 37, 118, 145, 253
MalI GATC 2 cut(s) 28, 356
MboI GATC 2 cut(s) 26, 354
MboII GAAGA 3 cut(s) 167, 190, 266
MluCI AATT 4 cut(s) 78, 242, 306, 450
MnlI CCTC 4 cut(s) 133, 391, 419, 422
MseI TTAA 2 cut(s) 245, 468
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 26, 354
NlaIII CATG 2 cut(s) 33, 349
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 145, 253
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 4 cut(s) 50, 53, 205, 387
Ppu21I YACGTR 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 33
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 187, 431
PstI CTGCAG 1 cut(s) 53
RsaI GTAC 3 cut(s) 162, 318, 419
RsaNI GTAC 3 cut(s) 161, 317, 418
SacII CCGCGG 1 cut(s) 70
SaqAI TTAA 2 cut(s) 245, 468
SatI GCNGC 4 cut(s) 49, 52, 204, 386
Sau3AI GATC 2 cut(s) 26, 354
Sau96I GGNCC 2 cut(s) 187, 431
ScrFI CCNGG 1 cut(s) 35
SfaNI GCATC 2 cut(s) 214, 352
SfcI CTRYAG 1 cut(s) 49
Sfr303I CCGCGG 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 70
SinI GGWCC 1 cut(s) 187
Sse9I AATT 4 cut(s) 78, 242, 306, 450
SsiI CCGC 4 cut(s) 67, 69, 204, 393
SspMI CTAG 2 cut(s) 15, 338
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 4 cut(s) 151, 217, 253, 477
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 353, 370
TasI AATT 4 cut(s) 78, 242, 306, 450
TatI WGTACW 2 cut(s) 160, 417
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 245, 468
Tru9I TTAA 2 cut(s) 245, 468
TscAI CASTG 3 cut(s) 220, 258, 480
TseFI GTSAC 2 cut(s) 145, 253
TseI GCWGC 3 cut(s) 48, 51, 385
Tsp45I GTSAC 2 cut(s) 145, 253
TspDTI ATGAA 2 cut(s) 182, 444
TspRI CASTG 3 cut(s) 220, 258, 480
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 1 cut(s) 306
XspI CTAG 2 cut(s) 15, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.