Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Forward (+)

8094228 .. 8095509

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAGGAAACTTTCTTGTTTGCCAAAAGGAATAAAAATGCAAGGAATTGCTAGGGCTGTGAGATCATGCCATGAGATACTCAAAGCTGCAGCTTTGGAGCATTCCCGCGGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCTCCAGCCCTAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACTGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATATGGCTAAAAACAATATCGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATATATTGCAGGAATCATCACAGAAAGAGATTATCTGAGGAAAATAGTTGCACAGGATAGATCACCCATGTACACTAGGGTTGGAGAGATTATGACTAATGAGAGCAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCATGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGTTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATGAGTACATTAGAGGAGATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

215

Amino Acids

24.12

Weight (kDa)

9.14

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	79 - 129	1e-07	CBS domain
CBS	PF00571	140 - 195	4.4e-15	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	106, 108, 597
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	5 cut(s)	207, 318, 410, 522, 623
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	144, 607
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	86, 92, 541
AluI	AGCT	3 cut(s)	86, 92, 541
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	86, 89, 589
ApoI	RAATTY	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	449
AsiGI	ACCGGT	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	73, 101, 601
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	51, 414, 542
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	3 cut(s)	87, 90, 590
BlsI	GCNGC	3 cut(s)	88, 91, 591
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	262
BpmI	CTGGAG	2 cut(s)	150, 348
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	106, 236
BsaWI	WCCGGW	1 cut(s)	523
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	106, 236
BseJI	GATNNNNATC	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	73, 101, 601
Bsh1236I	CGCG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	62, 398, 558
BspACI	CCGC	3 cut(s)	106, 108, 597
BspCNI	CTCAG	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	523
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	106, 236
BssMI	GATC	3 cut(s)	62, 398, 558
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	196, 265, 457
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	65, 401, 561
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	62, 398, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	521
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	73, 101, 601
BtgI	CCRYGG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	261, 462
Cac8I	GCNNGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	109
Csp6I	GTAC	5 cut(s)	206, 317, 409, 521, 622
CspAI	ACCGGT	1 cut(s)	523
CviAII	CATG	5 cut(s)	66, 71, 406, 518, 550
CviJI	RGCY	8 cut(s)	56, 86, 92, 170, 241, 290, 325, 541
CviKI_1	RGCY	8 cut(s)	56, 86, 92, 170, 241, 290, 325, 541
CviQI	GTAC	5 cut(s)	206, 317, 409, 521, 622
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	64, 400, 560
DpnII	GATC	3 cut(s)	62, 398, 558
Eco130I	CCWWGG	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	5 cut(s)	69, 74, 409, 521, 553
FatI	CATG	5 cut(s)	65, 70, 405, 517, 549
FauI	CCCGC	3 cut(s)	101, 113, 590
Fnu4HI	GCNGC	3 cut(s)	87, 90, 590
Fsp4HI	GCNGC	3 cut(s)	87, 90, 590
FspBI	CTAG	3 cut(s)	51, 414, 542
GluI	GCNGC	3 cut(s)	87, 90, 590
GsuI	CTGGAG	2 cut(s)	150, 348
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	5 cut(s)	69, 74, 409, 521, 553
HinfI	GANTC	2 cut(s)	351, 505
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	2 cut(s)	375, 466
Hpy8I	GTNNAC	1 cut(s)	411
HpyCH4III	ACNGT	3 cut(s)	196, 265, 457
HpyCH4V	TGCA	5 cut(s)	40, 89, 347, 389, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	5 cut(s)	69, 74, 409, 521, 553
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	62, 398, 558
LmnI	GCTCC	2 cut(s)	97, 586
LpnPI	CCDG	9 cut(s)	180, 216, 229, 312, 333, 339, 377, 467, 537
Lsp1109I	GCAGC	3 cut(s)	73, 101, 601
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	3 cut(s)	51, 414, 542
MaeIII	GTNAC	3 cut(s)	157, 190, 457
MalI	GATC	3 cut(s)	64, 400, 560
MboI	GATC	3 cut(s)	62, 398, 558
MboII	GAAGA	3 cut(s)	212, 236, 470
MluCI	AATT	5 cut(s)	45, 117, 446, 510, 602
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	3 cut(s)	172, 369, 623
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	3 cut(s)	62, 398, 558
NlaIII	CATG	5 cut(s)	69, 74, 409, 521, 553
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	2 cut(s)	190, 457
NspI	RCATGY	1 cut(s)	521
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	351, 505
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	88, 91, 591
PshBI	ATTAAT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	5 cut(s)	207, 318, 410, 522, 623
RsaNI	GTAC	5 cut(s)	206, 317, 409, 521, 622
RseI	CAYNNNNRTG	1 cut(s)	255
SacII	CCGCGG	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	3 cut(s)	87, 90, 590
Sau3AI	GATC	3 cut(s)	62, 398, 558
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	7 cut(s)	88, 94, 137, 142, 164, 238, 543
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	87
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	45, 117, 446, 510, 602
SsiI	CCGC	3 cut(s)	106, 108, 597
SspMI	CTAG	3 cut(s)	51, 414, 542
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	3 cut(s)	196, 265, 457
TaqI	TCGA	2 cut(s)	557, 574
TasI	AATT	5 cut(s)	45, 117, 446, 510, 602
TatI	WGTACW	4 cut(s)	205, 316, 408, 621
TfiI	GAWTC	2 cut(s)	351, 505
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	2 cut(s)	268, 462
TseFI	GTSAC	2 cut(s)	190, 457
TseI	GCWGC	3 cut(s)	86, 89, 589
Tsp45I	GTSAC	2 cut(s)	190, 457
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	268, 462
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	3 cut(s)	51, 414, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.