Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Forward (+)

28422655 .. 28424340

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCAAGGAATTGTGAGGGCTGTAAGATCTTGCCAGGGAATACTCAAAGCTGCAGCTCTGGAACATTCGCACGGTAGAGGAATTGCTAGGATAGAGAAGTTAAGTTCAAGCTGTAAATGGCGCTCTCCAGCCCCCAAAGGATTGGAGAATATAACTGTGCAAGATGTACTAATGAACAAGAGTGAAGAAACTGGACCTTGGCTTTGGTGCCACACAGATGACACTGTAATTGATGCAGTAAAAAATATGGCTAAGAACAATATAGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATCTATTGCAGGAATCATCACAGAACGAGATTATCTGAGGAAAATAGTTGCACAGGATAGATCACCCATCTACACAAGGGTCAGAGAGATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAGCTTATGACAGAGAATCAAATACGGCACGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCAATCAAAGATGTTGTTCGAGCAGTGGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATCAGTACATTAGAGGAGATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

8.97

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	66 - 116	9.7e-08	CBS domain
CBS	PF00571	127 - 182	4.3e-15	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	4 cut(s)	168, 279, 483, 584
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	108, 519, 568
AjnI	CCWGG	2 cut(s)	33, 286
AluBI	AGCT	5 cut(s)	50, 56, 111, 454, 502
AluI	AGCT	5 cut(s)	50, 56, 111, 454, 502
ApeKI	GCWGC	4 cut(s)	50, 53, 451, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	410
AsiGI	ACCGGT	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	37, 65, 463, 562
BccI	CCATC	2 cut(s)	374, 488
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	35, 288
BfaI	CTAG	2 cut(s)	87, 503
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	4 cut(s)	51, 54, 452, 551
BlsI	GCNGC	4 cut(s)	52, 55, 453, 552
Bme1390I	CCNGG	2 cut(s)	35, 288
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	35, 288
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	111, 309
BsaAI	YACGTR	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	34, 197
BsaWI	WCCGGW	1 cut(s)	484
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	2 cut(s)	35, 288
BseDI	CCNNGG	2 cut(s)	34, 197
BseJI	GATNNNNATC	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	37, 65, 463, 562
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	26, 359
BspACI	CCGC	1 cut(s)	558
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	34, 197
BssMI	GATC	2 cut(s)	26, 359
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	35, 288
Bst4CI	ACNGT	4 cut(s)	74, 157, 226, 418
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	252, 335
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	29, 362
BstMBI	GATC	2 cut(s)	26, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	35, 288
BstSCI	CCNGG	2 cut(s)	33, 286
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	4 cut(s)	37, 65, 463, 562
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	3 cut(s)	222, 423, 546
Cac8I	GCNNGC	1 cut(s)	500
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	167, 278, 482, 583
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	1 cut(s)	511
CviQI	GTAC	4 cut(s)	167, 278, 482, 583
DdeI	CTNAG	2 cut(s)	252, 335
DpnI	GATC	2 cut(s)	28, 361
DpnII	GATC	2 cut(s)	26, 359
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	33, 286
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	514
FaiI	YATR	7 cut(s)	152, 248, 263, 392, 458, 491, 512
FatI	CATG	1 cut(s)	510
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	4 cut(s)	51, 54, 452, 551
Fsp4HI	GCNGC	4 cut(s)	51, 54, 452, 551
FspBI	CTAG	2 cut(s)	87, 503
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	51, 54, 452, 551
GsuI	CTGGAG	2 cut(s)	111, 309
HaeII	RGCGCY	1 cut(s)	124
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	312, 466
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	354
Hpy188I	TCNGA	3 cut(s)	336, 383, 427
Hpy188III	TCNNGA	1 cut(s)	59
HpyCH4III	ACNGT	4 cut(s)	74, 157, 226, 418
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	7 cut(s)	4, 53, 160, 236, 308, 350, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	252, 335
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	26, 359
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	4 cut(s)	37, 65, 463, 562
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	87, 503
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	28, 361
MboI	GATC	2 cut(s)	26, 359
MboII	GAAGA	2 cut(s)	197, 431
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	5 cut(s)	9, 81, 228, 407, 563
MnlI	CCTC	4 cut(s)	9, 71, 330, 584
MseI	TTAA	2 cut(s)	101, 410
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	35, 288
MvaI	CCWGG	2 cut(s)	35, 288
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	26, 359
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	312, 466
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	52, 55, 453, 552
Ppu21I	YACGTR	1 cut(s)	481
PshBI	ATTAAT	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	33, 286
PspGI	CCWGG	2 cut(s)	33, 286
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	4 cut(s)	168, 279, 483, 584
RsaNI	GTAC	4 cut(s)	167, 278, 482, 583
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	101, 410
SatI	GCNGC	4 cut(s)	51, 54, 452, 551
Sau3AI	GATC	2 cut(s)	26, 359
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	35, 288
SetI	ASST	7 cut(s)	52, 58, 113, 199, 456, 483, 504
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	9, 81, 228, 407, 563
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	2 cut(s)	87, 503
StyD4I	CCNGG	2 cut(s)	33, 286
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	4 cut(s)	74, 157, 226, 418
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	535
TasI	AATT	5 cut(s)	9, 81, 228, 407, 563
TatI	WGTACW	3 cut(s)	166, 277, 582
TfiI	GAWTC	2 cut(s)	312, 466
Tru1I	TTAA	2 cut(s)	101, 410
Tru9I	TTAA	2 cut(s)	101, 410
TscAI	CASTG	3 cut(s)	229, 423, 546
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	50, 53, 451, 550
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	229, 423, 546
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	410
XspI	CTAG	2 cut(s)	87, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.