Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000171

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Forward (+)

4113 .. 5153

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_171G00441320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAAGGGATTGCTAGGGCTGTGAGATCATGCCATGAGTTACTCAAAGCTGCAGCTTTGGAGCATTCCCGCGGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCTCCAGCCCTAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACTGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATATGGCTAAAAACAATATCGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATATATTGCAGGAATCATCACAGAAAGAGATTATCTGAGGAAAATAGTTGCACAGGACAGATCGCCCATGTACACTAGGGTTGGAGAGATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCACGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGCTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATGAGTACATTAGAGGAGATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

202

Amino Acids

22.77

Weight (kDa)

8.39

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	67 - 117	9.3e-08	CBS domain
CBS	PF00571	128 - 183	1.6e-14	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	210
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 72, 561
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	5 cut(s)	171, 282, 374, 486, 587
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	108, 571
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	50, 56, 505
AluI	AGCT	3 cut(s)	50, 56, 505
Alw26I	GTCTC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	50, 53, 553
ApoI	RAATTY	1 cut(s)	474
AseI	ATTAAT	1 cut(s)	413
AsiGI	ACCGGT	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	37, 65, 565
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	3 cut(s)	15, 378, 506
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	3 cut(s)	51, 54, 554
BlsI	GCNGC	3 cut(s)	52, 55, 555
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	226, 520
BpmI	CTGGAG	2 cut(s)	114, 312
BsaAI	YACGTR	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	70, 200
BsaWI	WCCGGW	1 cut(s)	487
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	70, 200
BseJI	GATNNNNATC	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	37, 65, 565
Bsh1236I	CGCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	26, 362, 522
BspACI	CCGC	3 cut(s)	70, 72, 561
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	70, 200
BssMI	GATC	3 cut(s)	26, 362, 522
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	160, 229, 421
BstAUI	TGTACA	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	29, 365, 525
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	26, 362, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 539
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	37, 65, 565
BtgI	CCRYGG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	225, 426
Cac8I	GCNNGC	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	197
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	5 cut(s)	170, 281, 373, 485, 586
CspAI	ACCGGT	1 cut(s)	487
CviAII	CATG	4 cut(s)	30, 35, 370, 514
CviJI	RGCY	8 cut(s)	20, 50, 56, 134, 205, 254, 289, 505
CviKI_1	RGCY	8 cut(s)	20, 50, 56, 134, 205, 254, 289, 505
CviQI	GTAC	5 cut(s)	170, 281, 373, 485, 586
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	3 cut(s)	28, 364, 524
DpnII	GATC	3 cut(s)	26, 362, 522
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	4 cut(s)	33, 38, 373, 517
FatI	CATG	4 cut(s)	29, 34, 369, 513
FauI	CCCGC	3 cut(s)	65, 77, 554
Fnu4HI	GCNGC	3 cut(s)	51, 54, 554
Fsp4HI	GCNGC	3 cut(s)	51, 54, 554
FspBI	CTAG	3 cut(s)	15, 378, 506
GluI	GCNGC	3 cut(s)	51, 54, 554
GsuI	CTGGAG	2 cut(s)	114, 312
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	4 cut(s)	33, 38, 373, 517
HinfI	GANTC	2 cut(s)	315, 469
HpaII	CCGG	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	339, 430
Hpy8I	GTNNAC	1 cut(s)	375
HpyCH4III	ACNGT	3 cut(s)	160, 229, 421
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	4, 53, 311, 353, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 539
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	33, 38, 373, 517
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	26, 362, 522
LmnI	GCTCC	2 cut(s)	61, 550
LpnPI	CCDG	9 cut(s)	144, 180, 193, 276, 297, 303, 341, 431, 501
Lsp1109I	GCAGC	3 cut(s)	37, 65, 565
LweI	GCATC	2 cut(s)	226, 520
MaeI	CTAG	3 cut(s)	15, 378, 506
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	4 cut(s)	39, 121, 154, 421
MalI	GATC	3 cut(s)	28, 364, 524
MboI	GATC	3 cut(s)	26, 362, 522
MboII	GAAGA	3 cut(s)	176, 200, 434
MluCI	AATT	4 cut(s)	81, 410, 474, 566
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	136, 333, 587
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	295, 539
NdeII	GATC	3 cut(s)	26, 362, 522
NlaIII	CATG	4 cut(s)	33, 38, 373, 517
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	154, 421
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	315, 469
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	52, 55, 555
Ppu21I	YACGTR	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	5 cut(s)	171, 282, 374, 486, 587
RsaNI	GTAC	5 cut(s)	170, 281, 373, 485, 586
RseI	CAYNNNNRTG	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	3 cut(s)	51, 54, 554
Sau3AI	GATC	3 cut(s)	26, 362, 522
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	8 cut(s)	52, 58, 101, 106, 128, 202, 486, 507
SfaNI	GCATC	2 cut(s)	226, 520
SfcI	CTRYAG	1 cut(s)	51
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	81, 410, 474, 566
SsiI	CCGC	3 cut(s)	70, 72, 561
SspMI	CTAG	3 cut(s)	15, 378, 506
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	160, 229, 421
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	521, 538
TasI	AATT	4 cut(s)	81, 410, 474, 566
TatI	WGTACW	4 cut(s)	169, 280, 372, 585
TfiI	GAWTC	2 cut(s)	315, 469
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	2 cut(s)	232, 426
TseFI	GTSAC	2 cut(s)	154, 421
TseI	GCWGC	3 cut(s)	50, 53, 553
Tsp45I	GTSAC	2 cut(s)	154, 421
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	232, 426
VpaK11BI	GGWCC	1 cut(s)	197
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	1 cut(s)	474
XspI	CTAG	3 cut(s)	15, 378, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.