Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Forward (+)

34174727 .. 34176364

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAAGGAATTTCCAGGGCCGTTCGATCATGCCAGCAAATACTCAAGGCTGCAATTTTACAGCATGCACAGGGGAGAGAAATTGCTGGAATTGAAAAGATAGTTTCTAGTTTAAAATGGGTTACCTCTCCACCTGCACAGCAGAAAGGATTAGAGAATGTGACTGTGGCAGATGTTCTGATGACAAAAGATGAACAAACTGGACCTTGGCTCTGGTGCCACACAAACGACGTTGTAATTGATGCCGTCAAAAATATGGCTAAAAACAATGTCGGGTCATTAGTGGTACTGAAGCCAGGAGAGCAACAATACATTGCAGGGATCATCACAGAAAGAGACTATTTGAGGAAGATAATTGCACAGGAAAGGTCGCCCAATCACACTAGAGTTGGAGAAATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAAGCAATGCAACTTATGACAGAGAATCAAATAAGGCATGTTCCAGTTATAGATGGGAAGATAGTTGGCATGATTTCAATCAAAGATGTAGTTCGAGCAGTAGTGGAGCAGCAAAGTGGGGAATTAAAGCAACTGAACGAGTACATAAAAGGAAAATACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

205

Amino Acids

22.8

Weight (kDa)

8.81

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	288, 593
AgsI	TTSAA	3 cut(s)	95, 452, 528
AjnI	CCWGG	2 cut(s)	14, 295
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	50, 559
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	18, 203
AvaII	GGWCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	37, 571
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	2 cut(s)	5, 230
BciT130I	CCWGG	2 cut(s)	16, 297
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	2 cut(s)	108, 384
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	51, 560
BlsI	GCNGC	2 cut(s)	52, 561
Bme1390I	CCNGG	2 cut(s)	16, 297
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	18, 203
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	16, 297
BmsI	GCATC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	15, 206
Bse1I	ACTGG	2 cut(s)	205, 494
Bse3DI	GCAATG	2 cut(s)	312, 462
Bse8I	GATNNNNATC	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	16, 297
BseDI	CCNNGG	2 cut(s)	15, 206
BseJI	GATNNNNATC	1 cut(s)	527
BseMI	GCAATG	2 cut(s)	312, 462
BseNI	ACTGG	2 cut(s)	205, 494
BseXI	GCAGC	2 cut(s)	37, 571
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	26, 321
BspANI	GGCC	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	218
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	312, 462
BsrI	ACTGG	2 cut(s)	205, 494
BssECI	CCNNGG	2 cut(s)	15, 206
BssMI	GATC	2 cut(s)	26, 321
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	16, 297
Bst4CI	ACNGT	2 cut(s)	166, 427
BstC8I	GCNNGC	2 cut(s)	35, 66
BstEII	GGTNACC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	29, 324
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	26, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	16, 297
BstNSI	RCATGY	2 cut(s)	68, 491
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	14, 295
BstV1I	GCAGC	2 cut(s)	37, 571
BsuRI	GGCC	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	35, 66
Cfr13I	GGNCC	2 cut(s)	18, 203
Csp6I	GTAC	2 cut(s)	287, 592
CviAII	CATG	4 cut(s)	30, 65, 488, 520
CviJI	RGCY	5 cut(s)	20, 50, 211, 260, 295
CviKI_1	RGCY	5 cut(s)	20, 50, 211, 260, 295
CviQI	GTAC	2 cut(s)	287, 592
DpnI	GATC	2 cut(s)	28, 323
DpnII	GATC	2 cut(s)	26, 321
DraI	TTTAAA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	14, 295
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	33, 68, 491, 523
FaiI	YATR	9 cut(s)	31, 66, 257, 401, 467, 489, 500, 521, 596
FatI	CATG	4 cut(s)	29, 64, 487, 519
Fnu4HI	GCNGC	2 cut(s)	51, 560
Fsp4HI	GCNGC	2 cut(s)	51, 560
FspBI	CTAG	2 cut(s)	108, 384
GluI	GCNGC	2 cut(s)	51, 560
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	33, 68, 491, 523
HinfI	GANTC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	180, 436
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	166, 427
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	7 cut(s)	4, 53, 68, 137, 317, 359, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	33, 68, 491, 523
Kzo9I	GATC	2 cut(s)	26, 321
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	37, 571
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	108, 384
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	121, 160, 427
MalI	GATC	2 cut(s)	28, 323
MboI	GATC	2 cut(s)	26, 321
MboII	GAAGA	3 cut(s)	361, 440, 520
MluCI	AATT	9 cut(s)	9, 54, 81, 90, 237, 354, 396, 416, 572
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	2 cut(s)	136, 339
MseI	TTAA	3 cut(s)	113, 419, 575
MspR9I	CCNGG	2 cut(s)	16, 297
MvaI	CCWGG	2 cut(s)	16, 297
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	2 cut(s)	26, 321
NlaIII	CATG	4 cut(s)	33, 68, 491, 523
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	160, 427
NspI	RCATGY	2 cut(s)	68, 491
PaeI	GCATGC	1 cut(s)	68
PaqCI	CACCTGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	52, 561
PshBI	ATTAAT	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	14, 295
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	14, 295
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	18, 203
RsaI	GTAC	2 cut(s)	288, 593
RsaNI	GTAC	2 cut(s)	287, 592
SaqAI	TTAA	3 cut(s)	113, 419, 575
SatI	GCNGC	2 cut(s)	51, 560
Sau3AI	GATC	2 cut(s)	26, 321
Sau96I	GGNCC	2 cut(s)	18, 203
ScrFI	CCNGG	2 cut(s)	16, 297
SetI	ASST	5 cut(s)	128, 136, 208, 234, 371
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	9 cut(s)	9, 54, 81, 90, 237, 354, 396, 416, 572
SspMI	CTAG	2 cut(s)	108, 384
StyD4I	CCNGG	2 cut(s)	14, 295
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	166, 427
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	25, 544
TasI	AATT	9 cut(s)	9, 54, 81, 90, 237, 354, 396, 416, 572
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	3 cut(s)	113, 419, 575
Tru9I	TTAA	3 cut(s)	113, 419, 575
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	160, 427
TseI	GCWGC	2 cut(s)	50, 559
Tsp45I	GTSAC	2 cut(s)	160, 427
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	2 cut(s)	68, 491
XspI	CTAG	2 cut(s)	108, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.