Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015428

Physical Location & Seq

Genomic Coordinates Reverse (-)

60609961 .. 60611918

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGGAAAGTATATAGGTTTTGTCAAGTAAGAGATGACCATGGCTTGCTGCTACATCCTCTGCTTCATAACCTTACCCCATCATCCTTCATCGGGGAAGCTTCAATCATTTTTCAGCAGCTTTGTTGTTTGCCAAAAGGAATAAAAATGCAAGGAATTGCTAGGGCTGTGAGATCATGCCATGAGATACTCAAAGCTGCAGCTTTGGAGCATTCCCGCGGGAGACGAATTGCTTGGGTAGAAAGGTTAGGCTCAAGTTGTAAATGGGTTACCACTCCAGCCCTAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACAGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATATGGCTAAAAACAATATCGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATATATTGCAGGAATAATCACAGAAAGAGATTATGTGAGGAAAATAGTTGCACAGGACAGATCACCCATGTACACTAGGGTTGGAGAGATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCATGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGTTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATGAGTACATTAGAGGAAATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

251

Amino Acids

28.41

Weight (kDa)

8.99

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	116 - 166	3e-07	CBS domain
CBS	PF00571	177 - 232	5.9e-15	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47271
fragaria_vesca	FvH4_2g39650
malus_domestica	MD08G1030200.v1.1
prunus_persica	Prupe.1G377900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301241
rosa_laevigata	RLG00000011268
rosa_multiflora	Rmu_sc0013354.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa	Rorug06G0302600
rosa_samantha	Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana	Rw6G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	217, 219, 708
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	5 cut(s)	318, 429, 521, 633, 734
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	105, 718
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	5 cut(s)	101, 121, 197, 203, 652
AluI	AGCT	5 cut(s)	101, 121, 197, 203, 652
Alw26I	GTCTC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	49, 118, 197, 200, 700
ApoI	RAATTY	1 cut(s)	621
AseI	ATTAAT	1 cut(s)	560
AsiGI	ACCGGT	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	357
BbvI	GCAGC	5 cut(s)	36, 130, 184, 212, 712
BccI	CCATC	2 cut(s)	88, 638
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	162, 525, 653
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	5 cut(s)	50, 119, 198, 201, 701
BlsI	GCNGC	5 cut(s)	51, 120, 199, 202, 702
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	2 cut(s)	261, 459
BpuEI	CTTGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	40, 217, 347
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	40, 217, 347
BseGI	GGATG	2 cut(s)	55, 83
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	603
BseXI	GCAGC	5 cut(s)	36, 130, 184, 212, 712
Bsh1236I	CGCG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	357
BshTI	ACCGGT	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	173, 509, 669
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	3 cut(s)	217, 219, 708
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	519
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	3 cut(s)	40, 217, 347
BssMI	GATC	3 cut(s)	173, 509, 669
BssT1I	CCWWGG	2 cut(s)	40, 347
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	307, 376, 568
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	47, 650
BstDSI	CCRYGG	2 cut(s)	40, 217
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	55, 83
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	176, 512, 672
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	173, 509, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	36, 130, 184, 212, 712
BtgI	CCRYGG	2 cut(s)	40, 217
BtsCI	GGATG	2 cut(s)	55, 83
BtsIMutI	CAGTG	2 cut(s)	372, 573
Cac8I	GCNNGC	2 cut(s)	47, 650
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	344
Cfr42I	CCGCGG	1 cut(s)	220
Csp6I	GTAC	5 cut(s)	317, 428, 520, 632, 733
CspAI	ACCGGT	1 cut(s)	634
CviAII	CATG	6 cut(s)	41, 177, 182, 517, 629, 661
CviQI	GTAC	5 cut(s)	317, 428, 520, 632, 733
DpnI	GATC	3 cut(s)	175, 511, 671
DpnII	GATC	3 cut(s)	173, 509, 669
Eco130I	CCWWGG	2 cut(s)	40, 347
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	575
Eco91I	GGTNACC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	40, 347
ErhI	CCWWGG	2 cut(s)	40, 347
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	6 cut(s)	44, 180, 185, 520, 632, 664
FatI	CATG	6 cut(s)	40, 176, 181, 516, 628, 660
FauI	CCCGC	3 cut(s)	212, 224, 701
Fnu4HI	GCNGC	5 cut(s)	50, 119, 198, 201, 701
FokI	GGATG	2 cut(s)	42, 70
Fsp4HI	GCNGC	5 cut(s)	50, 119, 198, 201, 701
FspBI	CTAG	3 cut(s)	162, 525, 653
GluI	GCNGC	5 cut(s)	50, 119, 198, 201, 701
GsuI	CTGGAG	2 cut(s)	261, 459
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	6 cut(s)	44, 180, 185, 520, 632, 664
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	1 cut(s)	504
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	1 cut(s)	577
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	307, 376, 568
HpyCH4V	TGCA	5 cut(s)	151, 200, 458, 500, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
Hsp92II	CATG	6 cut(s)	44, 180, 185, 520, 632, 664
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	173, 509, 669
LmnI	GCTCC	2 cut(s)	208, 697
LpnPI	CCDG	9 cut(s)	291, 327, 340, 423, 444, 450, 488, 578, 648
Lsp1109I	GCAGC	5 cut(s)	36, 130, 184, 212, 712
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	162, 525, 653
MaeIII	GTNAC	3 cut(s)	268, 301, 568
MalI	GATC	3 cut(s)	175, 511, 671
MboI	GATC	3 cut(s)	173, 509, 669
MboII	GAAGA	3 cut(s)	323, 347, 581
MluCI	AATT	6 cut(s)	156, 228, 557, 621, 713, 745
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	3 cut(s)	69, 480, 734
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	173, 509, 669
NlaIII	CATG	6 cut(s)	44, 180, 185, 520, 632, 664
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	301, 568
NspI	RCATGY	1 cut(s)	632
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	634
PkrI	GCNGC	5 cut(s)	51, 120, 199, 202, 702
PpuMI	RGGWCCY	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	5 cut(s)	318, 429, 521, 633, 734
RsaNI	GTAC	5 cut(s)	317, 428, 520, 632, 733
RseI	CAYNNNNRTG	1 cut(s)	366
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	5 cut(s)	50, 119, 198, 201, 701
Sau3AI	GATC	3 cut(s)	173, 509, 669
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	9 cut(s)	20, 75, 103, 123, 199, 205, 248, 349, 654
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	198
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	6 cut(s)	156, 228, 557, 621, 713, 745
SsiI	CCGC	3 cut(s)	217, 219, 708
SspMI	CTAG	3 cut(s)	162, 525, 653
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	2 cut(s)	40, 347
TaaI	ACNGT	3 cut(s)	307, 376, 568
TaqI	TCGA	2 cut(s)	668, 685
TasI	AATT	6 cut(s)	156, 228, 557, 621, 713, 745
TatI	WGTACW	4 cut(s)	316, 427, 519, 732
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	379, 573
TseFI	GTSAC	2 cut(s)	301, 568
TseI	GCWGC	5 cut(s)	49, 118, 197, 200, 700
Tsp45I	GTSAC	2 cut(s)	301, 568
TspDTI	ATGAA	3 cut(s)	56, 79, 338
TspRI	CASTG	2 cut(s)	379, 573
VpaK11BI	GGWCC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	3 cut(s)	162, 525, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.