Rh6DG415800

CBS domain-containing protein CBSX3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015428
Physical Location & Seq
Reverse (-)
59976662 .. 59977320
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG415800.1

Sequence Viewer

Length: 360 bp
ATGGCTAAAAACAATATCGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATATATTGCAGGAATCATCACAGAAAGAGATTATGTGAGGAAAATAGTTGCACAGGACAGATCACCCATGTACACTAGGGTTGGAGAGATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCATGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGTTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATGAGTACATTAGAGGAGATTACTATTGA

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

6.58

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 45 - 100 1.3e-15 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47271
fragaria_vesca FvH4_2g39650
malus_domestica MD08G1030200.v1.1
prunus_persica Prupe.1G377900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301241
rosa_laevigata RLG00000011268
rosa_multiflora Rmu_sc0013354.1_g000011
rosa_roxburghii Rroxscaffold_171G00441320 Rroxscaffold_7G00166990
rosa_rugosa Rorug06G0302600
rosa_samantha Rh6AG415900 Rh6AG416000 Rh6BG422700 Rh6DG415800 Rh6DG415900
rosa_wichuraiana Rw6G036020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 4 cut(s) 33, 125, 237, 338
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 225
AseI ATTAAT 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 108
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 42
BfaI CTAG 2 cut(s) 129, 257
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 272
BseMI GCAATG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 316
BshTI ACCGGT 1 cut(s) 238
BsiSI CCGG 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 2 cut(s) 113, 273
BspACI CCGC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 238
BssMI GATC 2 cut(s) 113, 273
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 116, 276
BstMBI GATC 2 cut(s) 113, 273
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 4 cut(s) 32, 124, 236, 337
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 3 cut(s) 121, 233, 265
CviJI RGCY 3 cut(s) 5, 40, 256
CviKI_1 RGCY 3 cut(s) 5, 40, 256
CviQI GTAC 4 cut(s) 32, 124, 236, 337
DpnI GATC 2 cut(s) 115, 275
DpnII GATC 2 cut(s) 113, 273
Eco57I CTGAAG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 124, 236, 268
FaiI YATR 8 cut(s) 57, 87, 122, 146, 212, 234, 245, 266
FatI CATG 3 cut(s) 120, 232, 264
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 2 cut(s) 129, 257
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 63
HapII CCGG 1 cut(s) 239
Hin1II CATG 3 cut(s) 124, 236, 268
HinfI GANTC 2 cut(s) 66, 220
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 62, 104, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 3 cut(s) 124, 236, 268
Kzo9I GATC 2 cut(s) 113, 273
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 27, 48, 54, 92, 182, 252
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 2 cut(s) 129, 257
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 115, 275
MboI GATC 2 cut(s) 113, 273
MboII GAAGA 1 cut(s) 185
MluCI AATT 3 cut(s) 161, 225, 317
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 84, 338
MseI TTAA 1 cut(s) 164
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 113, 273
NlaIII CATG 3 cut(s) 124, 236, 268
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 236
PfeI GAWTC 2 cut(s) 66, 220
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 1 cut(s) 306
PshBI ATTAAT 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
RsaI GTAC 4 cut(s) 33, 125, 237, 338
RsaNI GTAC 4 cut(s) 32, 124, 236, 337
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 113, 273
ScrFI CCNGG 1 cut(s) 42
SetI ASST 1 cut(s) 258
Sse9I AATT 3 cut(s) 161, 225, 317
SsiI CCGC 1 cut(s) 312
SspMI CTAG 2 cut(s) 129, 257
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 272, 289
TasI AATT 3 cut(s) 161, 225, 317
TatI WGTACW 3 cut(s) 31, 123, 336
TfiI GAWTC 2 cut(s) 66, 220
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 172
TspRI CASTG 1 cut(s) 177
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 1 cut(s) 225
XceI RCATGY 1 cut(s) 236
XspI CTAG 2 cut(s) 129, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.