Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

17485576 .. 17486463

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTCTGGAAGCTGCTTTCTCCATGAGTTTTTGCTCCTTCTCTGTCCCTAAAGCAATCTTCTGTGAGAGAGAAACTTCATCTTTTCAACGAATCACCTCGAGAGCAAAGGGAATTGCGGGTGAGAGTCAAGTTCAAAGCTCTGATGGAGTTGAGACTCAAGTCAAGGAAACTTCTCCCAAAGTATTTGATAAACTGCCTGAAAGAAATTTAGATACTTGGAGCGGTGGCAGAGAAACAGCAAGAGGACTTTCAGGTTCAGTAGTAAGAAACACTGTACGAAAAGATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAGCCAGAGATTTCAGGGGGTGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAGCTGAAATCTTTAGGGAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACTAAGTATGTTCTTCACGACATTGATGAAGAAGCTAAAGAGAAAGCCTTGATGCATCATAGTGAACGGTTAGCTATTGCTTTCGGGATTATAAACACTCCTCCAGGGACGACAATAAGGGTGATGAAGAATCTGAGGATATGTGGAGATTGCCATAACTTCATAAAGATATTATCGAGTATCGAAGATAGAGAGATCATTGTAAGAGATAACAAGAGGTTCCATCATTTTAGAGATGGTAACTGCTCTTGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase

Protein Analysis

239

Amino Acids

26.74

Weight (kDa)

9.1

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	147 - 239	1.8e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	225
AciI	CCGC	2 cut(s)	119, 225
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	2 cut(s)	279, 447
AgsI	TTSAA	3 cut(s)	89, 137, 324
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	6 cut(s)	14, 141, 374, 406, 488, 527
AluI	AGCT	6 cut(s)	14, 141, 374, 406, 488, 527
Alw26I	GTCTC	3 cut(s)	149, 426, 446
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	208
AsuHPI	GGTGA	5 cut(s)	88, 134, 300, 374, 586
AvaI	CYCGRG	1 cut(s)	100
BccI	CCATC	3 cut(s)	140, 683, 684
BciT130I	CCWGG	1 cut(s)	558
BcoDI	GTCTC	3 cut(s)	149, 426, 446
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	2 cut(s)	495, 517
BoxI	GACNNNNGTC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	2 cut(s)	351, 543
BshFI	GGCC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	32, 574
BsmAI	GTCTC	3 cut(s)	149, 426, 446
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	32, 574
BsnI	GGCC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	648
BspACI	CCGC	2 cut(s)	119, 225
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	277, 522
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	456, 587
BstKTI	GATC	1 cut(s)	651
BstMAI	GTCTC	3 cut(s)	149, 426, 446
BstMBI	GATC	1 cut(s)	648
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	558
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	556
BstSNI	TACGTA	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	439
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	278, 446
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	2 cut(s)	278, 446
DdeI	CTNAG	2 cut(s)	456, 587
DpnI	GATC	1 cut(s)	650
DpnII	GATC	1 cut(s)	648
Eco105I	TACGTA	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	1 cut(s)	28
FaiI	YATR	9 cut(s)	26, 303, 444, 462, 513, 545, 595, 609, 617
FaqI	GGGAC	2 cut(s)	32, 574
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	395
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	4 cut(s)	93, 127, 157, 583
HphI	GGTGA	5 cut(s)	88, 134, 300, 374, 586
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	2 cut(s)	145, 588
Hpy188III	TCNNGA	4 cut(s)	8, 102, 470, 538
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	49, 321
HpyCH4III	ACNGT	2 cut(s)	277, 522
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	456, 587
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	41, 222
LpnPI	CCDG	8 cut(s)	213, 240, 342, 360, 423, 462, 543, 570
LweI	GCATC	2 cut(s)	495, 517
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	1 cut(s)	650
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	1 cut(s)	648
MboII	GAAGA	6 cut(s)	52, 379, 458, 494, 592, 650
MluCI	AATT	2 cut(s)	114, 208
MlyI	GAGTC	2 cut(s)	136, 151
MnlI	CCTC	6 cut(s)	109, 239, 329, 564, 582, 663
Mph1103I	ATGCAT	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	648
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	93, 583
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	135, 151
PpsI	GAGTC	2 cut(s)	135, 151
Ppu21I	YACGTR	1 cut(s)	400
PshAI	GACNNNNGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	674
RsaI	GTAC	2 cut(s)	279, 447
RsaNI	GTAC	2 cut(s)	278, 446
RseI	CAYNNNNRTG	1 cut(s)	513
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	648
SchI	GAGTC	2 cut(s)	136, 151
ScrFI	CCNGG	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	495, 517
Sfr274I	CTCGAG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	2 cut(s)	100, 159
SmoI	CTYRAG	2 cut(s)	100, 159
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	2 cut(s)	114, 208
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	119, 225
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	277, 522
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	101, 629, 636
TasI	AATT	2 cut(s)	114, 208
TfiI	GAWTC	2 cut(s)	93, 583
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	69, 495, 593, 604
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	100
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.