Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000721.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Reverse (-)

19219 .. 19737

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000721.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgatggaacctatatatgtacttttgtcgaacttgtatgctgctttaggccgttgggataatgtggctaaggtgcgaaaactaatgagggagcgaggggttaagaaagaacctggttgtagttggattgacgttgaaaatatggtccatgtcttcttggttggtgatactgtgcaccctgaggtaaatgaggtgtacaagtatctagagcaactggttcttaaaatgaggaagttaggatatgctcctgacacaaagtttgggttgcataatatggagtctgagcataaggagaattccttgtctactcacagtgagaagcttgcagttgcatttgggatcatgaagcttcctcttggagccacaattagagtttttaagaatcttagaatctgtggggattgccataatgcatttaagtatgtgtcaagagtggttggaagagagatagttgtgagagacgccaagaggtttcatcattttaggaacggcgaatgctcttgtggaaattactggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

172

Amino Acids

19.87

Weight (kDa)

9.21

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	21, 197
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	322, 349
AluI	AGCT	2 cut(s)	322, 349
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	453
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	2 cut(s)	36, 505
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	9, 361
BmrFI	CCNGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	219, 518
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	171, 273
BseNI	ACTGG	2 cut(s)	219, 518
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	453
BsmBI	CGTCTC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	172, 274
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	9, 361
BspPI	GGATC	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	219, 518
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	172, 314
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	69, 180, 282, 386
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	470
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	20, 196
CviAII	CATG	2 cut(s)	149, 343
CviJI	RGCY	5 cut(s)	51, 68, 322, 349, 362
CviKI_1	RGCY	5 cut(s)	51, 68, 322, 349, 362
CviQI	GTAC	2 cut(s)	20, 196
DdeI	CTNAG	4 cut(s)	69, 180, 282, 386
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	2 cut(s)	152, 346
FatI	CATG	2 cut(s)	148, 342
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	2 cut(s)	152, 346
HindIII	AAGCTT	2 cut(s)	320, 347
HinfI	GANTC	3 cut(s)	278, 382, 390
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	175, 196, 306
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	206, 248, 343, 429
Hpy8I	GTNNAC	3 cut(s)	175, 196, 306
HpyCH4III	ACNGT	2 cut(s)	172, 314
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	175, 268, 326, 332, 413
HpyF3I	CTNAG	4 cut(s)	69, 180, 282, 386
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	152, 346
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	91, 250, 359
LpnPI	CCDG	6 cut(s)	99, 126, 192, 200, 261, 499
Lsp1109I	GCAGC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	2 cut(s)	145, 453
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	295, 366, 508
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	104, 418
MnlI	CCTC	7 cut(s)	81, 89, 175, 184, 222, 363, 462
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	4 cut(s)	102, 222, 378, 417
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	152, 346
NlaIV	GGNNCC	2 cut(s)	9, 361
NsiI	ATGCAT	1 cut(s)	415
PagI	TCATGA	1 cut(s)	342
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	382, 390
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	9, 361
PspPI	GGNCC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	21, 197
RsaNI	GTAC	2 cut(s)	20, 196
SaqAI	TTAA	4 cut(s)	102, 222, 378, 417
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	13, 75, 115, 135, 186, 195, 324, 351, 473
SexAI	ACCWGGT	1 cut(s)	112
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	295, 366, 508
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	172, 314
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	295, 366, 508
TatI	WGTACW	2 cut(s)	19, 195
TfiI	GAWTC	2 cut(s)	382, 390
Tru1I	TTAA	4 cut(s)	102, 222, 378, 417
Tru9I	TTAA	4 cut(s)	102, 222, 378, 417
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	359, 464
TspRI	CASTG	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.