RLG00000014707

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017498
Physical Location & Seq
Reverse (-)
56598053 .. 56598979
927 bp
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UTR
Exon/CDS
Intron
RLM00000014707

Sequence Viewer

Length: 456 bp
ATGAAGAGCCTTGGTTATGTTCCAGACTTCAGCTTTGTGTTGCAGGATGTTGAGGATGATGAGAAAGAGCATATCCTCACAAGTCATAGCGAGAGATTGGCGATTGCTTTTGGAATCATTAGCACGCCTCCTAAAACTCCCATTCGGATCTTCAAGAACCTGAGGGTTTGCGGCGATTGCCACAATGTGACGAAACTCATATCAGTAATAACGGAGAGGGAGATCATTGTGAGGGATTCAAACCGTTTCCACCATTTCAAGGATGGAACTTGCTCTTGTGGGGATTATTGGAATTTGAGATTGATTGAAGTTATTGTCCGCAAGGTTCAGCCTCTGAAGATGAACAAGACGGAAGAGGGTGTCGTTGGAGCTGATAGAGCCGGAGAGACGGCTACTACTAAGATCAAGTCCAATCACATGACCTGTCTTCTCATCACACTCAACCCCGTCCCATGA

Protein Analysis

152

Amino Acids

17.06

Weight (kDa)

7.69

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 5 - 97 4e-46 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 171, 319
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 2 cut(s) 13, 356
AdeI CACNNNGTG 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 4 cut(s) 154, 240, 259, 308
AluBI AGCT 2 cut(s) 33, 371
AluI AGCT 2 cut(s) 33, 371
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 334
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AxyI CCTNAGG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 419
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 380
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 3 cut(s) 52, 61, 268
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 434
Bsp143I GATC 3 cut(s) 147, 222, 402
BspACI CCGC 2 cut(s) 171, 319
BspCNI CTCAG 1 cut(s) 153
BspPI GGATC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 147, 222, 402
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 161, 399
BstF5I GGATG 3 cut(s) 52, 61, 268
BstKTI GATC 3 cut(s) 150, 225, 405
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 3 cut(s) 147, 222, 402
BstMWI GCNNNNNNNGC 2 cut(s) 177, 377
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 52, 61, 268
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 334
CviAII CATG 2 cut(s) 418, 453
CviJI RGCY 6 cut(s) 9, 33, 331, 371, 380, 392
CviKI_1 RGCY 6 cut(s) 9, 33, 331, 371, 380, 392
DdeI CTNAG 2 cut(s) 161, 399
DpnI GATC 3 cut(s) 149, 224, 404
DpnII GATC 3 cut(s) 147, 222, 402
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 13, 356
Eco81I CCTNAGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 2 cut(s) 421, 456
FaiI YATR 6 cut(s) 18, 72, 87, 200, 419, 454
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 417, 452
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 3 cut(s) 59, 68, 275
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
HapII CCGG 1 cut(s) 381
Hin1II CATG 2 cut(s) 421, 456
HinfI GANTC 2 cut(s) 114, 236
HpaII CCGG 1 cut(s) 381
Hpy188I TCNGA 2 cut(s) 147, 336
Hpy188III TCNNGA 2 cut(s) 23, 154
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 377
HpyF3I CTNAG 2 cut(s) 161, 399
Hsp92II CATG 2 cut(s) 421, 456
Kzo9I GATC 3 cut(s) 147, 222, 402
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 5 cut(s) 29, 36, 173, 394, 436
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 149, 224, 404
MboI GATC 3 cut(s) 147, 222, 402
MboII GAAGA 5 cut(s) 16, 142, 349, 365, 419
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 8 cut(s) 46, 86, 138, 156, 210, 225, 342, 349
MspI CCGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 177, 377
NdeII GATC 3 cut(s) 147, 222, 402
NlaIII CATG 2 cut(s) 421, 456
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 114, 236
PkrI GCNGC 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 3 cut(s) 147, 222, 402
SetI ASST 5 cut(s) 35, 162, 327, 373, 425
Sse9I AATT 1 cut(s) 292
SsiI CCGC 2 cut(s) 171, 319
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 245
TasI AATT 1 cut(s) 292
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 114, 236
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 17, 356
TspGWI ACGGA 2 cut(s) 227, 365
XapI RAATTY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.