Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

52203727 .. 52204419

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATTGATTTGTTGTGCCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATAAAATCAATGCCTTTTGAACCAGGTGCACCAATTTGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCAAGCTGCAGAACGACTCTTTGAGCTGGTGCCTCAGCATGATGGAACCTATGTACTTTTGTCGAACTTGTATGCTGCTTTAGGCCGTTGGGATGATGTGGCTAAGGTGCGAACACTAATGAGGGAGCGAGCGGTGAAGAAAGAACCTGGTTGTAGTTGGATAGACGTTGAAAATATGGTTCATGTCTTCTTGGTTGGTGATACTGTGCACCCTGAGGTACATGAGGTGTACAAGCATCTAGAGCAACTTGTTCTTAAAATGAGGAAGTTAGGATATGTTCCTGACACAAAGTTTGCGTTGCATGATATGGAATCTGAGCATAAAGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGCAGTTGCATTTGGGATCATGAAGCTTCCACTTGGAGCCACAATCAGAGTTTTTAAGAATCTTAGGATTTGTGGGGATTGCCATAATGCATTTAAGTTTATGTCAAGGGTTGTCGGGAGAGAAATAGTTGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAACGGCGAATGCTCTTATGGAAATTACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

230

Amino Acids

26.16

Weight (kDa)

7.19

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	1.4e-22	E motif
DYW_deaminase	PF14432	138 - 229	2e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	469
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	3 cut(s)	195, 360, 371
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	71, 143, 311
AjnI	CCWGG	2 cut(s)	73, 286
AluBI	AGCT	5 cut(s)	104, 146, 166, 496, 523
AluI	AGCT	5 cut(s)	104, 146, 166, 496, 523
Alw21I	GWGCWC	2 cut(s)	82, 351
Alw26I	GTCTC	1 cut(s)	627
Alw44I	GTGCAC	2 cut(s)	78, 347
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	39, 223
ApaLI	GTGCAC	2 cut(s)	78, 347
ApeKI	GCWGC	2 cut(s)	146, 215
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsuHPI	GGTGA	2 cut(s)	286, 350
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	2 cut(s)	82, 351
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	2 cut(s)	82, 351
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	133, 202
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	210, 679
BciT130I	CCWGG	2 cut(s)	75, 288
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	2 cut(s)	101, 380
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	147, 216
BlsI	GCNGC	2 cut(s)	148, 217
Bme1390I	CCNGG	2 cut(s)	75, 288
BmiI	GGNNCC	3 cut(s)	171, 187, 535
BmrFI	CCNGG	2 cut(s)	75, 288
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	174, 243
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	75, 288
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	188, 345, 447
BseSI	GKGCMC	2 cut(s)	82, 351
BseXI	GCAGC	2 cut(s)	133, 202
BshFI	GGCC	2 cut(s)	41, 225
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	82, 351
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	627
BsmBI	CGTCTC	1 cut(s)	627
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	41, 225
Bsp1286I	GDGCHC	2 cut(s)	82, 351
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	20, 513
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	2 cut(s)	41, 225
BspCNI	CTCAG	3 cut(s)	187, 346, 448
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	171, 187, 535
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	20, 513
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	75, 288
Bst4CI	ACNGT	2 cut(s)	346, 488
BstACI	GRCGYC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	270, 498
BstDEI	CTNAG	5 cut(s)	174, 243, 354, 456, 560
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	23, 516
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	2 cut(s)	20, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 382
BstNI	CCWGG	2 cut(s)	75, 288
BstSCI	CCNGG	2 cut(s)	73, 286
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	2 cut(s)	82, 351
BstV1I	GCAGC	2 cut(s)	133, 202
BstV2I	GAAGAC	1 cut(s)	319
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	41, 225
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	270, 498
CciI	TCATGA	1 cut(s)	516
CseI	GACGC	1 cut(s)	644
CsiI	ACCWGGT	2 cut(s)	73, 286
Csp6I	GTAC	3 cut(s)	194, 359, 370
CviAII	CATG	6 cut(s)	119, 179, 323, 362, 443, 517
CviQI	GTAC	3 cut(s)	194, 359, 370
DdeI	CTNAG	5 cut(s)	174, 243, 354, 456, 560
DpnI	GATC	2 cut(s)	22, 515
DpnII	GATC	2 cut(s)	20, 513
Eco130I	CCWWGG	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	73, 286
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	6 cut(s)	122, 182, 326, 365, 446, 520
FatI	CATG	6 cut(s)	118, 178, 322, 361, 442, 516
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	147, 216
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	147, 216
FspBI	CTAG	2 cut(s)	101, 380
GluI	GCNGC	2 cut(s)	147, 216
HaeIII	GGCC	2 cut(s)	41, 225
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	6 cut(s)	122, 182, 326, 365, 446, 520
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	2 cut(s)	494, 521
HinfI	GANTC	4 cut(s)	115, 156, 452, 556
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	286, 350
Hpy166II	GTNNAC	5 cut(s)	33, 80, 349, 370, 480
Hpy188I	TCNGA	2 cut(s)	457, 545
Hpy188III	TCNNGA	4 cut(s)	380, 422, 517, 613
Hpy8I	GTNNAC	5 cut(s)	33, 80, 349, 370, 480
HpyCH4III	ACNGT	2 cut(s)	346, 488
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	7 cut(s)	80, 149, 349, 442, 500, 506, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 382
HpyF3I	CTNAG	5 cut(s)	174, 243, 354, 456, 560
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	6 cut(s)	122, 182, 326, 365, 446, 520
Kzo9I	GATC	2 cut(s)	20, 513
LmnI	GCTCC	2 cut(s)	265, 533
Lsp1109I	GCAGC	2 cut(s)	133, 202
LweI	GCATC	1 cut(s)	385
MabI	ACCWGGT	2 cut(s)	73, 286
MaeI	CTAG	2 cut(s)	101, 380
MaeII	ACGT	1 cut(s)	306
MalI	GATC	2 cut(s)	22, 515
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	20, 513
MboII	GAAGA	2 cut(s)	289, 319
MhlI	GDGCHC	2 cut(s)	82, 351
MluCI	AATT	3 cut(s)	84, 469, 682
MlyI	GAGTC	2 cut(s)	109, 150
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	8 cut(s)	31, 85, 183, 255, 349, 358, 396, 636
Mph1103I	ATGCAT	1 cut(s)	589
MseI	TTAA	4 cut(s)	50, 396, 552, 591
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	75, 288
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	2 cut(s)	75, 288
MwoI	GCNNNNNNNGC	2 cut(s)	101, 382
NdeII	GATC	2 cut(s)	20, 513
NlaIII	CATG	6 cut(s)	122, 182, 326, 365, 446, 520
NlaIV	GGNNCC	3 cut(s)	171, 187, 535
NsiI	ATGCAT	1 cut(s)	589
PagI	TCATGA	1 cut(s)	516
PctI	GAATGC	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	452, 556
PkrI	GCNGC	2 cut(s)	148, 217
PleI	GAGTC	2 cut(s)	109, 150
PpsI	GAGTC	2 cut(s)	109, 150
Psp6I	CCWGG	2 cut(s)	73, 286
PspGI	CCWGG	2 cut(s)	73, 286
PspN4I	GGNNCC	3 cut(s)	171, 187, 535
PstI	CTGCAG	1 cut(s)	151
RsaI	GTAC	3 cut(s)	195, 360, 371
RsaNI	GTAC	3 cut(s)	194, 359, 370
SaqAI	TTAA	4 cut(s)	50, 396, 552, 591
SatI	GCNGC	2 cut(s)	147, 216
Sau3AI	GATC	2 cut(s)	20, 513
SchI	GAGTC	2 cut(s)	109, 150
ScrFI	CCNGG	2 cut(s)	75, 288
SduI	GDGCHC	2 cut(s)	82, 351
SexAI	ACCWGGT	2 cut(s)	73, 286
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	84, 469, 682
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	2 cut(s)	101, 380
StyD4I	CCNGG	2 cut(s)	73, 286
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	346, 488
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	84, 469, 682
TatI	WGTACW	2 cut(s)	193, 369
TfiI	GAWTC	2 cut(s)	452, 556
Tru1I	TTAA	4 cut(s)	50, 396, 552, 591
Tru9I	TTAA	4 cut(s)	50, 396, 552, 591
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	2 cut(s)	146, 215
TspDTI	ATGAA	3 cut(s)	311, 533, 638
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	2 cut(s)	78, 347
XapI	RAATTY	1 cut(s)	469
XbaI	TCTAGA	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	2 cut(s)	101, 380
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.