Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000271.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Reverse (-)

233425 .. 233970

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000271.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgctcctatcagtgccccagcatgatggaacctatatacttttgtcgaacttgtatgctgctttaggccgttgggataatgtggctaaggtgcgaaaactaatgagggagcgaggggttaagaaagaacctggttgtagttggattgacgttgaaaatatggtccatgtcttcttggttggtgatactgtgcaccctgaggtaaatgaggtgtacaagtatctagagcaactggttcttaaaatgaggaagttaggatatgctcctgacacaaagtttgggttgcataatatggagtctgagcataaggagaattccttgtctactcacagtgagaagcttgcagttgcatttgggatcatgaagcttcctcttggagccacaattagagtttttaagaatcttagaatctgtggggattgccataatgcatttaagtatgtgtcaagagtggttggaagagagatagttgtgagagacgccaagaggtttcatcattttaggaacggcgaatgctcgtggaaattactggtagctgtagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

181

Amino Acids

20.75

Weight (kDa)

9.39

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	340, 367, 536
AluI	AGCT	3 cut(s)	340, 367, 536
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	471
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	2 cut(s)	18, 195
BauI	CACGAG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	54, 523
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	31, 379
BmrFI	CCNGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	237, 534
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	189, 291
BseNI	ACTGG	2 cut(s)	237, 534
BseSI	GKGCMC	2 cut(s)	18, 195
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	18, 195
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	190, 292
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	31, 379
BspPI	GGATC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	237, 534
BssMI	GATC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	480
BssSI	CACGAG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	190, 332
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	87, 198, 300, 404
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	18, 195
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	18, 337
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	488
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	23, 167, 361
CviJI	RGCY	6 cut(s)	69, 86, 340, 367, 380, 536
CviKI_1	RGCY	6 cut(s)	69, 86, 340, 367, 380, 536
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	87, 198, 300, 404
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	3 cut(s)	26, 170, 364
FatI	CATG	3 cut(s)	22, 166, 360
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	26, 170, 364
HindIII	AAGCTT	2 cut(s)	338, 365
HinfI	GANTC	3 cut(s)	296, 400, 408
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	193, 214, 324
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	224, 266, 361, 447
Hpy8I	GTNNAC	3 cut(s)	193, 214, 324
HpyCH4III	ACNGT	2 cut(s)	190, 332
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	193, 286, 344, 350, 431
HpyF3I	CTNAG	4 cut(s)	87, 198, 300, 404
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	26, 170, 364
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	4 cut(s)	9, 109, 268, 377
LpnPI	CCDG	7 cut(s)	32, 117, 144, 210, 218, 279, 515
Lsp1109I	GCAGC	1 cut(s)	46
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	2 cut(s)	163, 471
MhlI	GDGCHC	2 cut(s)	18, 195
MluCI	AATT	3 cut(s)	313, 384, 524
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	122, 436
MnlI	CCTC	7 cut(s)	99, 107, 193, 202, 240, 381, 480
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	4 cut(s)	120, 240, 396, 435
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	3 cut(s)	26, 170, 364
NlaIV	GGNNCC	2 cut(s)	31, 379
NsiI	ATGCAT	1 cut(s)	433
PagI	TCATGA	1 cut(s)	360
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	400, 408
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	31, 379
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	4 cut(s)	120, 240, 396, 435
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	18, 195
SexAI	ACCWGGT	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	3 cut(s)	313, 384, 524
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	190, 332
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	313, 384, 524
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	400, 408
Tru1I	TTAA	4 cut(s)	120, 240, 396, 435
Tru9I	TTAA	4 cut(s)	120, 240, 396, 435
TscAI	CASTG	2 cut(s)	18, 337
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	377, 482
TspRI	CASTG	2 cut(s)	18, 337
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.