Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018744.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 452

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgagggagaaaggactgatcaagggccttggacgtagtttgattgagatcaatggaaaacttcaggcatttcatgtaggagacaagtcacatccaaggtctaaggaaatatatgaagagcttgagagtctagagaggaggttgaaggaggctggctttgttccacatacagaatccgtcctgcatgatttgaattatgaagagacagaggagacactttgcaatcatagtgagaggctggcaattgcttatggcctcatctgtactgctcctggaactacactaagaataactaaaaacctacgcgcatgtgtgaattgtcatgcagcaactaagctaatatctaagcttgtcaacagggagatagttgtcagggatgcaaagcgtttccaccatttcaaggatggattttgttcctgtggagattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

8.22

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	145, 193, 400
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	121, 337, 349
AluI	AGCT	3 cut(s)	121, 337, 349
Alw26I	GTCTC	3 cut(s)	75, 197, 206
AoxI	GGCC	2 cut(s)	25, 253
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	75, 197, 206
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	28, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	28, 95
BseGI	GGATG	3 cut(s)	91, 382, 409
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	151, 224
BseXI	GCAGC	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	27, 255
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	3 cut(s)	75, 197, 206
BsnI	GGCC	2 cut(s)	27, 255
Bsp143I	GATC	2 cut(s)	18, 48
BspANI	GGCC	2 cut(s)	27, 255
BspFNI	CGCG	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	28, 95
BssMI	GATC	2 cut(s)	18, 48
BssT1I	CCWWGG	2 cut(s)	28, 95
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	111, 195
BstC8I	GCNNGC	2 cut(s)	154, 240
BstDEI	CTNAG	4 cut(s)	102, 284, 333, 345
BstF5I	GGATG	3 cut(s)	91, 382, 409
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	21, 51
BstMAI	GTCTC	3 cut(s)	75, 197, 206
BstMBI	GATC	2 cut(s)	18, 48
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	27, 255
BtsCI	GGATG	3 cut(s)	91, 382, 409
Cac8I	GCNNGC	2 cut(s)	154, 240
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	4 cut(s)	74, 185, 309, 323
CviJI	RGCY	8 cut(s)	27, 121, 152, 156, 238, 255, 337, 349
CviKI_1	RGCY	8 cut(s)	27, 121, 152, 156, 238, 255, 337, 349
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	4 cut(s)	102, 284, 333, 345
DpnI	GATC	2 cut(s)	20, 50
DpnII	GATC	2 cut(s)	18, 48
Eam1104I	CTCTTC	2 cut(s)	111, 195
EarI	CTCTTC	2 cut(s)	111, 195
Eco130I	CCWWGG	2 cut(s)	28, 95
Eco57I	CTGAAG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	28, 95
ErhI	CCWWGG	2 cut(s)	28, 95
FaeI	CATG	4 cut(s)	77, 188, 312, 326
FatI	CATG	4 cut(s)	73, 184, 308, 322
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	78, 389, 416
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	27, 255
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	77, 188, 312, 326
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	127, 173
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	184, 222, 326, 380
HpyF3I	CTNAG	4 cut(s)	102, 284, 333, 345
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	77, 188, 312, 326
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 48
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	50, 138, 194, 224, 258, 285, 343, 358, 430
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	2 cut(s)	20, 50
MboI	GATC	2 cut(s)	18, 48
MboII	GAAGA	2 cut(s)	128, 212
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	3 cut(s)	193, 243, 316
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	129, 132, 142, 202, 228, 266
MspR9I	CCNGG	1 cut(s)	273
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	306
NdeII	GATC	2 cut(s)	18, 48
NlaIII	CATG	4 cut(s)	77, 188, 312, 326
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	18, 48
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	37, 101, 123, 143, 303, 339, 351
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	193, 243, 316
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	28, 95
TaiI	ACGT	1 cut(s)	37
TasI	AATT	3 cut(s)	193, 243, 316
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	3 cut(s)	62, 129, 213
TspGWI	ACGGA	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.