Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005913.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

11293 .. 11670

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005913.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggtccatgtcttcttggttggtgatactgtgcaccctgaggtaaatgagttgtacaagtatctagagcaactggttcttaaaatgaggaagttaggatatgctcctgacacaaagtttgggttgcataatatggagtctgagcataaggagaattccttgtctactcacagtgagaagcttgcagttgcatttgggattatgaagcttcctcttggagccacaatcagagtttttaagaatcttaggatttgtggggattgccataatgcatttaagtttatgtcaagagtggttgggagagaaatagtcgtgagagacgccaagaggtttcatcattttaggaacggcgaatgctcttgtggaaattactggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

125

Amino Acids

14.44

Weight (kDa)

9.14

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	56
AluBI	AGCT	2 cut(s)	181, 208
AluI	AGCT	2 cut(s)	181, 208
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	312
Alw44I	GTGCAC	1 cut(s)	32
ApaLI	GTGCAC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	4
BsaHI	GRCGYC	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	78, 377
Bse21I	CCTNAGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	30, 132
BseNI	ACTGG	2 cut(s)	78, 377
BseSI	GKGCMC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	31, 133
BspLI	GGNNCC	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	78, 377
BssNI	GRCGYC	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	31, 173
BstACI	GRCGYC	1 cut(s)	321
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	39, 141, 245
BstMAI	GTCTC	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	3 cut(s)	181, 208, 221
CviKI_1	RGCY	3 cut(s)	181, 208, 221
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	3 cut(s)	39, 141, 245
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	1 cut(s)	11
FaiI	YATR	8 cut(s)	9, 102, 129, 134, 147, 203, 267, 284
FatI	CATG	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	11
HindIII	AAGCTT	2 cut(s)	179, 206
HinfI	GANTC	2 cut(s)	137, 241
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	34, 165
Hpy188I	TCNGA	2 cut(s)	142, 230
Hpy188III	TCNNGA	4 cut(s)	65, 107, 288, 313
Hpy8I	GTNNAC	2 cut(s)	34, 165
HpyCH4III	ACNGT	2 cut(s)	31, 173
HpyCH4V	TGCA	5 cut(s)	34, 127, 185, 191, 272
HpyF3I	CTNAG	3 cut(s)	39, 141, 245
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	109, 218
LpnPI	CCDG	4 cut(s)	51, 59, 120, 358
MaeI	CTAG	1 cut(s)	65
MboII	GAAGA	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	154, 367
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	34, 81, 222, 321
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	3 cut(s)	81, 237, 276
Mva1269I	GAATGC	1 cut(s)	359
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	274
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	81, 237, 276
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	4 cut(s)	45, 183, 210, 332
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	154, 367
SspMI	CTAG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	31, 173
TasI	AATT	2 cut(s)	154, 367
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	81, 237, 276
Tru9I	TTAA	3 cut(s)	81, 237, 276
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	218, 323
TspRI	CASTG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.