Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

31467 .. 32259

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgcaggtactgtgcattggtgactggacaatggcggacggaattggagactcgtggaactatgacgtgcttaagctggtgaggtgcagcttgaggcgttacatcaacggtagtgttgatgagtttctagtcggtgataattctcatcctttatccaaaaatatctactcaaagttggatgagatagccaggagattgaagtcaatcggatatgtgccaaacaagtcacaccaatttgttgaggaagaggacatgaaggaacatgccctaattcgacatagtgagaaactagcaattgcctttggacttattagctccaagccatctcaaacaattcgcgttgtgaagaatcttcgtgtttgtggagactgccacttagttgctaagcttatatccaagctttataatggggagatttttctgagagatcgatatcggtttcatcattttagagaggagcattgctcatgtaatgattactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

161

Amino Acids

18.76

Weight (kDa)

8.2

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	9
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	76, 90, 315, 388, 400
AluI	AGCT	5 cut(s)	76, 90, 315, 388, 400
Alw26I	GTCTC	2 cut(s)	42, 360
AlwNI	CAGNNNCTG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	32, 91, 146
BauI	CACGAG	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	42, 360
BfaI	CTAG	2 cut(s)	128, 290
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	432
Bse1I	ACTGG	2 cut(s)	29, 485
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	430
BseGI	GGATG	2 cut(s)	145, 184
BseJI	GATNNNNATC	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	29, 485
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	42, 360
Bsp143I	GATC	1 cut(s)	427
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	414
BspDI	ATCGAT	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	29, 485
BssMI	GATC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	12, 110
Bst6I	CTCTTC	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	376, 384, 422
BstF5I	GGATG	2 cut(s)	145, 184
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	42, 360
BstMBI	GATC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	145, 184
CaiI	CAGNNNCTG	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	253, 263, 468
CviJI	RGCY	7 cut(s)	76, 90, 188, 315, 322, 388, 400
CviKI_1	RGCY	7 cut(s)	76, 90, 188, 315, 322, 388, 400
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	376, 384, 422
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	434
FaeI	CATG	3 cut(s)	256, 266, 471
FaiI	YATR	8 cut(s)	63, 213, 254, 264, 279, 392, 405, 469
FatI	CATG	3 cut(s)	252, 262, 467
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	132, 191
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	128, 290
GluI	GCNGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	256, 266, 471
HindIII	AAGCTT	2 cut(s)	386, 398
HinfI	GANTC	2 cut(s)	50, 349
HphI	GGTGA	3 cut(s)	32, 91, 146
Hpy188I	TCNGA	2 cut(s)	209, 423
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	12, 110
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 15, 87
HpyF3I	CTNAG	3 cut(s)	376, 384, 422
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	256, 266, 471
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	320, 457
LpnPI	CCDG	5 cut(s)	10, 62, 175, 202, 466
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	128, 290
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	20, 98, 225
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	257, 344, 358
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	6 cut(s)	42, 139, 233, 270, 294, 333
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	75, 87, 235, 241, 448
MseI	TTAA	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	339
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	3 cut(s)	256, 266, 471
NmuCI	GTSAC	2 cut(s)	20, 225
NspI	RCATGY	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	8 cut(s)	9, 69, 78, 86, 92, 317, 390, 402
SmlI	CTYRAG	2 cut(s)	71, 91
SmoI	CTYRAG	2 cut(s)	71, 91
Sse9I	AATT	6 cut(s)	42, 139, 233, 270, 294, 333
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	128, 290
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	12, 110
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	274, 430
TasI	AATT	6 cut(s)	42, 139, 233, 270, 294, 333
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	20, 225
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	20, 225
TspDTI	ATGAA	2 cut(s)	269, 431
TspGWI	ACGGA	1 cut(s)	54
Vha464I	CTTAAG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	128, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.