Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Reverse (-)

23544389 .. 23546012

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0253000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCCGGTTGGACCAGAAAGAGTGCTTATAATGGATGAAATATCCAATGGGCTGGACAGCTCAACAACATTGCAATTAGTGAAATCACTACAACAATATGTCCACATTCTGAACGGAACTGCATTAATCGCTCTACTGCAGCCAGCACCGGAGTACGATCCTTTGATAGGGGCATTAATCGCTGTTCCTGCCAACTCAACAGAAGCATTAGGAGTTATGGTTTTGAAGTATCGAGGTATATTTCCTGAGGCACGCTTCTACTGGATTGGATTAGTAGCTTTGATTGGCTTTATTCTTCTGTTGAATTTCCTTTTCACTTTGGCACTTCAGTATCTTGATCCACTTGAGATGCCCCAAGCAGTACTATCCAATGAGGCATCCTCTACAACAGAAGATAGCGGAGTTGCAAGCAATCCTACTAGGCAGCATGGCATGGTTCTTCCATTTGAACCCCTTTCATTTACTTTCGAGCAAATCAGATATGCTGTTGATATGCCTAAGGAAATGAAAGATCAAAGCAAAGCTGGGGATCAGCTAGAACTTCTTAAGGGCATGAGTGGTGCTTTTAGGCCTGGAGTTCTAACAGATTTGATGGGTGTTAGTGGCGCTGGAAAAACCACCCTCATGGATGTCTTAGCAGGAAGGAAGACAAGTGGATATATTGAGGGAGAATCACCTTATCTAGATATGCAAGAAGGCAAGAACAATGATCAAAATATCGAGTTTCGAGGAAATATCGATGGTCCCGAAAACGGAAATTTCGACGGAAATATCGTGGATATATCGATTTCGGTAAATAATCAAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

270

Amino Acids

29.4

Weight (kDa)

4.47

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDR_assoc	PF08370	64 - 121	9.7e-24	Plant PDR ABC transporter associated
ABC_tran	PF00005	182 - 234	3.9e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	3 cut(s)	152, 332, 537
AcsI	RAATTY	2 cut(s)	304, 757
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	155, 363
AfiI	CCNNNNNNNGG	2 cut(s)	167, 752
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	226, 304, 449
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	4 cut(s)	60, 278, 524, 535
AluI	AGCT	4 cut(s)	60, 278, 524, 535
AlwI	GGATC	3 cut(s)	152, 332, 537
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	139, 424
ApoI	RAATTY	2 cut(s)	304, 757
AseI	ATTAAT	2 cut(s)	125, 176
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	11, 743
AsuHPI	GGTGA	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	11, 743
AxyI	CCTNAGG	2 cut(s)	246, 498
BaeI	ACNNNNGTAYC	2 cut(s)	314, 347
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	151, 436
BccI	CCATC	2 cut(s)	586, 734
BciT130I	CCWGG	1 cut(s)	573
BclI	TGATCA	1 cut(s)	709
BfaI	CTAG	3 cut(s)	420, 536, 683
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	545
BisI	GCNGC	2 cut(s)	140, 425
BlsI	GCNGC	2 cut(s)	141, 426
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	2 cut(s)	11, 743
BmgT120I	GGNCC	2 cut(s)	11, 743
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	339, 386
BpiI	GAAGAC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	365
Bsa29I	ATCGAT	2 cut(s)	738, 785
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 752
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	266
Bse21I	CCTNAGG	2 cut(s)	246, 498
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	573
BseCI	ATCGAT	2 cut(s)	738, 785
BseGI	GGATG	3 cut(s)	40, 377, 634
BseLI	CCNNNNNNNGG	2 cut(s)	167, 752
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	151, 436
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	1 cut(s)	571
BshVI	ATCGAT	2 cut(s)	738, 785
BsiSI	CCGG	2 cut(s)	5, 149
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	167, 752
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	157, 337, 511, 529, 709
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	2 cut(s)	738, 785
BspLI	GGNNCC	1 cut(s)	745
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	3 cut(s)	152, 332, 537
BspTI	CTTAAG	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	5 cut(s)	157, 337, 511, 529, 709
Bst2UI	CCWGG	1 cut(s)	573
BstAFI	CTTAAG	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	144, 253, 409
BstDEI	CTNAG	3 cut(s)	246, 498, 634
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	40, 377, 634
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	5 cut(s)	160, 340, 514, 532, 712
BstMBI	GATC	5 cut(s)	157, 337, 511, 529, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 179, 188
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	151, 436
BstV2I	GAAGAC	1 cut(s)	653
BstXI	CCANNNNNNTGG	2 cut(s)	52, 625
Bsu15I	ATCGAT	2 cut(s)	738, 785
Bsu36I	CCTNAGG	2 cut(s)	246, 498
BsuRI	GGCC	1 cut(s)	571
BsuTUI	ATCGAT	2 cut(s)	738, 785
BtsCI	GGATG	3 cut(s)	40, 377, 634
Cac8I	GCNNGC	3 cut(s)	144, 253, 409
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	11, 743
ClaI	ATCGAT	2 cut(s)	738, 785
Csp6I	GTAC	2 cut(s)	154, 362
CviAII	CATG	4 cut(s)	428, 433, 553, 625
CviJI	RGCY	8 cut(s)	52, 60, 142, 278, 288, 524, 535, 571
CviKI_1	RGCY	8 cut(s)	52, 60, 142, 278, 288, 524, 535, 571
CviQI	GTAC	2 cut(s)	154, 362
DdeI	CTNAG	3 cut(s)	246, 498, 634
DpnI	GATC	5 cut(s)	159, 339, 513, 531, 711
DpnII	GATC	5 cut(s)	157, 337, 511, 529, 709
Eco147I	AGGCCT	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	11, 743
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	2 cut(s)	246, 498
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	571
FaeI	CATG	4 cut(s)	431, 436, 556, 628
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	4 cut(s)	427, 432, 552, 624
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	140, 425
FokI	GGATG	3 cut(s)	47, 364, 641
Fsp4HI	GCNGC	2 cut(s)	140, 425
FspBI	CTAG	3 cut(s)	420, 536, 683
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	2 cut(s)	140, 425
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	2 cut(s)	5, 149
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	431, 436, 556, 628
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	2 cut(s)	5, 149
HphI	GGTGA	1 cut(s)	666
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	111, 479
Hpy188III	TCNNGA	5 cut(s)	245, 335, 683, 746, 803
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	2 cut(s)	636, 689
HpyCH4V	TGCA	5 cut(s)	73, 122, 139, 407, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 179, 188
HpyF3I	CTNAG	3 cut(s)	246, 498, 634
Hsp92II	CATG	4 cut(s)	431, 436, 556, 628
HspAI	GCGC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	157, 337, 511, 529, 709
Lsp1109I	GCAGC	2 cut(s)	151, 436
LweI	GCATC	2 cut(s)	339, 386
MaeI	CTAG	3 cut(s)	420, 536, 683
MalI	GATC	5 cut(s)	159, 339, 513, 531, 711
MboI	GATC	5 cut(s)	157, 337, 511, 529, 709
MboII	GAAGA	4 cut(s)	287, 404, 431, 658
MluCI	AATT	3 cut(s)	74, 304, 757
MnlI	CCTC	7 cut(s)	227, 241, 367, 391, 632, 658, 722
MseI	TTAA	3 cut(s)	125, 176, 546
MslI	CAYNNNNRTG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	2 cut(s)	5, 149
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	3 cut(s)	128, 179, 188
NdeII	GATC	5 cut(s)	157, 337, 511, 529, 709
NlaIII	CATG	4 cut(s)	431, 436, 556, 628
NlaIV	GGNNCC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	3 cut(s)	744, 759, 771
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	141, 426
PshBI	ATTAAT	2 cut(s)	125, 176
PsiI	TTATAA	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	2 cut(s)	11, 743
PstI	CTGCAG	1 cut(s)	141
RsaI	GTAC	2 cut(s)	155, 363
RsaNI	GTAC	2 cut(s)	154, 362
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	125, 176, 546
SatI	GCNGC	2 cut(s)	140, 425
Sau3AI	GATC	5 cut(s)	157, 337, 511, 529, 709
Sau96I	GGNCC	2 cut(s)	11, 743
ScaI	AGTACT	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	573
SetI	ASST	6 cut(s)	62, 238, 280, 526, 537, 679
SfaNI	GCATC	2 cut(s)	339, 386
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	11, 743
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	344, 545
SmoI	CTYRAG	2 cut(s)	344, 545
Sse9I	AATT	3 cut(s)	74, 304, 757
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	3 cut(s)	420, 536, 683
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	571
TaqI	TCGA	7 cut(s)	232, 468, 720, 727, 738, 762, 785
TasI	AATT	3 cut(s)	74, 304, 757
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	3 cut(s)	125, 176, 546
Tru9I	TTAA	3 cut(s)	125, 176, 546
TseI	GCWGC	2 cut(s)	139, 424
TspDTI	ATGAA	3 cut(s)	51, 447, 521
TspGWI	ACGGA	3 cut(s)	129, 768, 780
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	11, 743
VspI	ATTAAT	2 cut(s)	125, 176
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	304, 757
XbaI	TCTAGA	1 cut(s)	682
XspI	CTAG	3 cut(s)	420, 536, 683
ZrmI	AGTACT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.