Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7960547.1

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Reverse (-)

34 .. 468

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7960547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgaatgagcaagggctgcagaaaatcccaggttgcagctggatcgaagtaaacggggttgttcacgaattcctcgtgggagacaagtcccacgagctgtccgacaagatatacgcgaaactcgacgagctggccaaggatctaaaagcagccggttatgttccaaccacggatttcgtgttgttcgacatagaagaggaagagaagcagcatttcctcggttgtcacagcgagaagctcgccattgcatttgctctcatcgccactgccccccaagacaccattcgagtttcaaagaacctccgcgtatgcggcgattgccaccaggccataaagctcatctccaagatcacagggagagagatcattgttcgcgacaataaccgattccatcggttccttgatggttcatgttcatgtaaagattattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

5.84

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	116, 306, 375
AciI	CCGC	2 cut(s)	304, 312
AclWI	GGATC	2 cut(s)	50, 147
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	2 cut(s)	28, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	5 cut(s)	39, 97, 130, 238, 337
AluI	AGCT	5 cut(s)	39, 97, 130, 238, 337
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	50, 147
AoxI	GGCC	2 cut(s)	132, 327
ApeKI	GCWGC	4 cut(s)	16, 36, 149, 208
ApoI	RAATTY	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	134
BauI	CACGAG	2 cut(s)	74, 92
BbvI	GCAGC	4 cut(s)	3, 48, 161, 220
BccI	CCATC	2 cut(s)	398, 399
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	2 cut(s)	30, 326
BcoDI	GTCTC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	17
BisI	GCNGC	5 cut(s)	17, 37, 150, 209, 313
BlsI	GCNGC	5 cut(s)	18, 38, 151, 210, 314
Bme1390I	CCNGG	2 cut(s)	30, 326
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	30, 326
BsaJI	CCNNGG	4 cut(s)	28, 135, 168, 217
Bse118I	RCCGGY	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	30, 326
BseDI	CCNNGG	4 cut(s)	28, 135, 168, 217
BseMI	GCAATG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	3, 48, 161, 220
Bsh1236I	CGCG	3 cut(s)	116, 306, 375
BshFI	GGCC	2 cut(s)	134, 329
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	134, 329
Bsp143I	GATC	4 cut(s)	42, 139, 348, 363
Bsp68I	TCGCGA	1 cut(s)	375
BspACI	CCGC	2 cut(s)	304, 312
BspANI	GGCC	2 cut(s)	134, 329
BspFNI	CGCG	3 cut(s)	116, 306, 375
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	21
BspPI	GGATC	2 cut(s)	50, 147
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	28, 135, 168, 217
BssMI	GATC	4 cut(s)	42, 139, 348, 363
BssSI	CACGAG	2 cut(s)	74, 92
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	2 cut(s)	74, 92
Bst2UI	CCWGG	2 cut(s)	30, 326
Bst6I	CTCTTC	2 cut(s)	189, 195
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	132, 240
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	3 cut(s)	116, 306, 375
BstKTI	GATC	4 cut(s)	45, 142, 351, 366
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	42, 139, 348, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 260, 312, 318
BstNI	CCWGG	2 cut(s)	30, 326
BstSCI	CCNGG	2 cut(s)	28, 324
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	3 cut(s)	116, 306, 375
BstV1I	GCAGC	4 cut(s)	3, 48, 161, 220
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	134, 329
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
BtuMI	TCGCGA	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	132, 240
Cfr10I	RCCGGY	1 cut(s)	152
CviAII	CATG	2 cut(s)	411, 417
CviJI	RGCY	9 cut(s)	16, 39, 97, 130, 134, 152, 238, 329, 337
CviKI_1	RGCY	9 cut(s)	16, 39, 97, 130, 134, 152, 238, 329, 337
DpnI	GATC	4 cut(s)	44, 141, 350, 365
DpnII	GATC	4 cut(s)	42, 139, 348, 363
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	189, 195
EarI	CTCTTC	2 cut(s)	189, 195
Eco130I	CCWWGG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	28, 324
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	414, 420
FaiI	YATR	7 cut(s)	112, 159, 191, 310, 332, 412, 418
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	410, 416
Fnu4HI	GCNGC	5 cut(s)	17, 37, 150, 209, 313
Fsp4HI	GCNGC	5 cut(s)	17, 37, 150, 209, 313
GluI	GCNGC	5 cut(s)	17, 37, 150, 209, 313
HaeIII	GGCC	2 cut(s)	134, 329
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	414, 420
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	52, 64
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	65, 374
Hpy8I	GTNNAC	2 cut(s)	52, 64
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	19, 36, 248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 260, 312, 318
Hsp92II	CATG	2 cut(s)	414, 420
Kzo9I	GATC	4 cut(s)	42, 139, 348, 363
LpnPI	CCDG	8 cut(s)	15, 25, 42, 116, 166, 311, 338, 339
Lsp1109I	GCAGC	4 cut(s)	3, 48, 161, 220
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	4 cut(s)	44, 141, 350, 365
MboI	GATC	4 cut(s)	42, 139, 348, 363
MboII	GAAGA	2 cut(s)	206, 212
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	126, 188
MnlI	CCTC	4 cut(s)	83, 190, 227, 311
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	30, 326
MvaI	CCWGG	2 cut(s)	30, 326
MvnI	CGCG	3 cut(s)	116, 306, 375
MwoI	GCNNNNNNNGC	4 cut(s)	16, 260, 312, 318
NdeII	GATC	4 cut(s)	42, 139, 348, 363
NlaIII	CATG	2 cut(s)	414, 420
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	224
NruI	TCGCGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 99, 120, 183
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	5 cut(s)	18, 38, 151, 210, 314
Psp6I	CCWGG	2 cut(s)	28, 324
PspGI	CCWGG	2 cut(s)	28, 324
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	39
RruI	TCGCGA	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	415
SatI	GCNGC	5 cut(s)	17, 37, 150, 209, 313
Sau3AI	GATC	4 cut(s)	42, 139, 348, 363
ScrFI	CCNGG	2 cut(s)	30, 326
SetI	ASST	7 cut(s)	34, 41, 99, 132, 240, 303, 339
SfcI	CTRYAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	415
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	304, 312
StyD4I	CCNGG	2 cut(s)	28, 324
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	4 cut(s)	45, 123, 186, 286
TasI	AATT	1 cut(s)	68
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	387
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	16, 36, 149, 208
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	17, 399, 405
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.